Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia
Identifieur interne : 002D39 ( Ncbi/Merge ); précédent : 002D38; suivant : 002D40Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia
Auteurs : Audrey Lacroix [Cambodge] ; Veasna Duong [Cambodge] ; Vibol Hul [Cambodge] ; Sorn San [Cambodge] ; Hull Davun [Cambodge] ; Keo Omaliss [Cambodge] ; Sokha Chea [Cambodge] ; Alexandre Hassanin [France] ; Watthana Theppangna ; Soubanh Silithammavong ; Kongsy Khammavong ; Sinpakone Singhalath ; Zoe Greatorex ; Amanda E. Fine [Viêt Nam] ; Tracey Goldstein [États-Unis] ; Sarah Olson [États-Unis] ; Damien O. Joly [États-Unis, Canada] ; Lucy Keatts [Cambodge] ; Philippe Dussart [Cambodge] ; Aneta Afelt [Pologne] ; Roger Frutos [France] ; Philippe Buchy [Cambodge, Singapour]Source :
- Infection, Genetics and Evolution [ 1567-1348 ] ; 2016.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ADN, Animaux, Cambodge, Chiroptera (virologie), Coronavirus (génétique), Gènes viraux, Laos, Phylogénie, Phylogéographie, Protéines virales (génétique), RNA replicase (génétique), Réservoirs d'agents pathogènes, Séquence nucléotidique, Variation génétique, Évolution moléculaire.
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA Replicase, Viral Proteins.
- genetics : Coronavirus.
- virology : Chiroptera.
- Animals, Base Sequence, Cambodia, Disease Reservoirs, Evolution, Molecular, Genes, Viral, Genetic Variation, Laos, Phylogeny, Phylogeography, Sequence Analysis, DNA.
Abstract
South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family
Url:
DOI: 10.1016/j.meegid.2016.11.029
PubMed: 27932284
PubMed Central: 7106194
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PMC:7106194Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia</title>
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<author><name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
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<author><name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
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<author><name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
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<author><name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
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<author><name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
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<author><name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E." last="Fine">Amanda E. Fine</name>
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<country xml:lang="fr">Viêt Nam</country>
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</author>
<author><name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1"><nlm:aff id="af0050">One Health Institute, School of Veterinary Medicine, University of California, Davis, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O." last="Joly">Damien O. Joly</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0060">Metabiota Inc., Nanaimo, British Columbia, Canada</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1"><nlm:aff id="af0020">Wildlife Conservation Society, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
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<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
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<affiliation wicri:level="1"><nlm:aff id="af0065">Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland</nlm:aff>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw</wicri:regionArea>
<wicri:noRegion>Warsaw</wicri:noRegion>
</affiliation>
</author>
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<affiliation wicri:level="3"><nlm:aff id="af0070">Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="af0075">Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0080">GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>GSK Vaccines R&D, 150 Beach road, # 22-00, 189720</wicri:regionArea>
<wicri:noRegion>189720</wicri:noRegion>
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</analytic>
<series><title level="j">Infection, Genetics and Evolution</title>
<idno type="ISSN">1567-1348</idno>
<idno type="eISSN">1567-7257</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Base Sequence</term>
<term>Cambodia</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus (genetics)</term>
<term>Disease Reservoirs</term>
<term>Evolution, Molecular</term>
<term>Genes, Viral</term>
<term>Genetic Variation</term>
<term>Laos</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>RNA Replicase (genetics)</term>
<term>Sequence Analysis, DNA</term>
<term>Viral Proteins (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Cambodge</term>
<term>Chiroptera (virologie)</term>
<term>Coronavirus (génétique)</term>
<term>Gènes viraux</term>
<term>Laos</term>
<term>Phylogénie</term>
<term>Phylogéographie</term>
<term>Protéines virales (génétique)</term>
<term>RNA replicase (génétique)</term>
<term>Réservoirs d'agents pathogènes</term>
<term>Séquence nucléotidique</term>
<term>Variation génétique</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term>
<term>Viral Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term>
<term>Protéines virales</term>
<term>RNA replicase</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Base Sequence</term>
<term>Cambodia</term>
<term>Disease Reservoirs</term>
<term>Evolution, Molecular</term>
<term>Genes, Viral</term>
<term>Genetic Variation</term>
<term>Laos</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Cambodge</term>
<term>Gènes viraux</term>
<term>Laos</term>
<term>Phylogénie</term>
<term>Phylogéographie</term>
<term>Réservoirs d'agents pathogènes</term>
<term>Séquence nucléotidique</term>
<term>Variation génétique</term>
<term>Évolution moléculaire</term>
</keywords>
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<front><div type="abstract" xml:lang="en"><p>South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family <italic>Pteropodidae</italic>
) (<italic>n</italic>
= 55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from <italic>Pipistrellus coromandra</italic>
fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 <italic>Myotis</italic>
bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely <italic>Macroglossus</italic>
sp., <italic>Megaerops niphanae</italic>
and <italic>Myotis horsfieldii</italic>
</p>
</div>
</front>
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</TEI>
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<author><name sortKey="San, Sorn" sort="San, Sorn" uniqKey="San S" first="Sorn" last="San">Sorn San</name>
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<author><name sortKey="Davun, Hull" sort="Davun, Hull" uniqKey="Davun H" first="Hull" last="Davun">Hull Davun</name>
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</author>
<author><name sortKey="Omaliss, Keo" sort="Omaliss, Keo" uniqKey="Omaliss K" first="Keo" last="Omaliss">Keo Omaliss</name>
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</affiliation>
</author>
<author><name sortKey="Chea, Sokha" sort="Chea, Sokha" uniqKey="Chea S" first="Sokha" last="Chea">Sokha Chea</name>
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<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
<affiliation wicri:level="1"><nlm:aff id="af0025">Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC, France</nlm:aff>
<country xml:lang="fr">France</country>
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<author><name sortKey="Theppangna, Watthana" sort="Theppangna, Watthana" uniqKey="Theppangna W" first="Watthana" last="Theppangna">Watthana Theppangna</name>
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<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
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</affiliation>
<affiliation><nlm:aff id="af0040">Metabiota Inc., Vientiane, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E." last="Fine">Amanda E. Fine</name>
<affiliation wicri:level="1"><nlm:aff id="af0045">Wildlife Conservation Society, Vietnam Program, Hanoi, Vietnam</nlm:aff>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Wildlife Conservation Society, Vietnam Program, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1"><nlm:aff id="af0050">One Health Institute, School of Veterinary Medicine, University of California, Davis, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O." last="Joly">Damien O. Joly</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0060">Metabiota Inc., Nanaimo, British Columbia, Canada</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1"><nlm:aff id="af0020">Wildlife Conservation Society, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Dussart, Philippe" sort="Dussart, Philippe" uniqKey="Dussart P" first="Philippe" last="Dussart">Philippe Dussart</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Afelt, Aneta" sort="Afelt, Aneta" uniqKey="Afelt A" first="Aneta" last="Afelt">Aneta Afelt</name>
<affiliation wicri:level="1"><nlm:aff id="af0065">Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland</nlm:aff>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw</wicri:regionArea>
<wicri:noRegion>Warsaw</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Frutos, Roger" sort="Frutos, Roger" uniqKey="Frutos R" first="Roger" last="Frutos">Roger Frutos</name>
<affiliation wicri:level="3"><nlm:aff id="af0070">Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="af0075">Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0080">GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>GSK Vaccines R&D, 150 Beach road, # 22-00, 189720</wicri:regionArea>
<wicri:noRegion>189720</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">27932284</idno>
<idno type="pmc">7106194</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7106194</idno>
<idno type="RBID">PMC:7106194</idno>
<idno type="doi">10.1016/j.meegid.2016.11.029</idno>
<date when="2016">2016</date>
<idno type="wicri:Area/Pmc/Corpus">001059</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001059</idno>
<idno type="wicri:Area/Pmc/Curation">001059</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001059</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000708</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000708</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia</title>
<author><name sortKey="Lacroix, Audrey" sort="Lacroix, Audrey" uniqKey="Lacroix A" first="Audrey" last="Lacroix">Audrey Lacroix</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Duong, Veasna" sort="Duong, Veasna" uniqKey="Duong V" first="Veasna" last="Duong">Veasna Duong</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hul, Vibol" sort="Hul, Vibol" uniqKey="Hul V" first="Vibol" last="Hul">Vibol Hul</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="San, Sorn" sort="San, Sorn" uniqKey="San S" first="Sorn" last="San">Sorn San</name>
<affiliation wicri:level="1"><nlm:aff id="af0010">National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Davun, Hull" sort="Davun, Hull" uniqKey="Davun H" first="Hull" last="Davun">Hull Davun</name>
<affiliation wicri:level="1"><nlm:aff id="af0010">National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Omaliss, Keo" sort="Omaliss, Keo" uniqKey="Omaliss K" first="Keo" last="Omaliss">Keo Omaliss</name>
<affiliation wicri:level="1"><nlm:aff id="af0015">Forest Administration, Ministry of Agriculture Forestry and Fisheries, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Forest Administration, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chea, Sokha" sort="Chea, Sokha" uniqKey="Chea S" first="Sokha" last="Chea">Sokha Chea</name>
<affiliation wicri:level="1"><nlm:aff id="af0020">Wildlife Conservation Society, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
<affiliation wicri:level="1"><nlm:aff id="af0025">Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC</wicri:regionArea>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Theppangna, Watthana" sort="Theppangna, Watthana" uniqKey="Theppangna W" first="Watthana" last="Theppangna">Watthana Theppangna</name>
<affiliation><nlm:aff id="af0030">National Animal Health Laboratory, Ministry of Agriculture Forestry and Fisheries, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
<affiliation><nlm:aff id="af0040">Metabiota Inc., Vientiane, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
<affiliation><nlm:aff id="af0035">Wildlife Conservation Society, Lao Democratic People's Republic</nlm:aff>
<wicri:noCountry code="subfield">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E." last="Fine">Amanda E. Fine</name>
<affiliation wicri:level="1"><nlm:aff id="af0045">Wildlife Conservation Society, Vietnam Program, Hanoi, Vietnam</nlm:aff>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Wildlife Conservation Society, Vietnam Program, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1"><nlm:aff id="af0050">One Health Institute, School of Veterinary Medicine, University of California, Davis, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O." last="Joly">Damien O. Joly</name>
<affiliation wicri:level="2"><nlm:aff id="af0055">Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0060">Metabiota Inc., Nanaimo, British Columbia, Canada</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1"><nlm:aff id="af0020">Wildlife Conservation Society, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Dussart, Philippe" sort="Dussart, Philippe" uniqKey="Dussart P" first="Philippe" last="Dussart">Philippe Dussart</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Afelt, Aneta" sort="Afelt, Aneta" uniqKey="Afelt A" first="Aneta" last="Afelt">Aneta Afelt</name>
<affiliation wicri:level="1"><nlm:aff id="af0065">Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland</nlm:aff>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw</wicri:regionArea>
<wicri:noRegion>Warsaw</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Frutos, Roger" sort="Frutos, Roger" uniqKey="Frutos R" first="Roger" last="Frutos">Roger Frutos</name>
<affiliation wicri:level="3"><nlm:aff id="af0070">Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="af0075">Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name>
<affiliation wicri:level="1"><nlm:aff id="af0005">Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia</nlm:aff>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="af0080">GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>GSK Vaccines R&D, 150 Beach road, # 22-00, 189720</wicri:regionArea>
<wicri:noRegion>189720</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Infection, Genetics and Evolution</title>
<idno type="ISSN">1567-1348</idno>
<idno type="eISSN">1567-7257</idno>
<imprint><date when="2016">2016</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family <italic>Pteropodidae</italic>
) (<italic>n</italic>
= 55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from <italic>Pipistrellus coromandra</italic>
fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 <italic>Myotis</italic>
bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely <italic>Macroglossus</italic>
sp., <italic>Megaerops niphanae</italic>
and <italic>Myotis horsfieldii</italic>
</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Alsahafi, A J" uniqKey="Alsahafi A">A.J. Alsahafi</name>
</author>
<author><name sortKey="Cheng, A C" uniqKey="Cheng A">A.C. Cheng</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Amengual, B" uniqKey="Amengual B">B. Amengual</name>
</author>
<author><name sortKey="Bourhy, H" uniqKey="Bourhy H">H. Bourhy</name>
</author>
<author><name sortKey="L Pez Roig, M" uniqKey="L Pez Roig M">M. López-Roig</name>
</author>
<author><name sortKey="Serra Cobo, J" uniqKey="Serra Cobo J">J. Serra-Cobo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Amman, B R" uniqKey="Amman B">B.R. Amman</name>
</author>
<author><name sortKey="Carroll, S A" uniqKey="Carroll S">S.A. Carroll</name>
</author>
<author><name sortKey="Reed, Z D" uniqKey="Reed Z">Z.D. Reed</name>
</author>
<author><name sortKey="Sealy, T K" uniqKey="Sealy T">T.K. Sealy</name>
</author>
<author><name sortKey="Balinandi, S" uniqKey="Balinandi S">S. Balinandi</name>
</author>
<author><name sortKey="Swanepoel, R" uniqKey="Swanepoel R">R. Swanepoel</name>
</author>
<author><name sortKey="Kemp, A" uniqKey="Kemp A">A. Kemp</name>
</author>
<author><name sortKey="Erickson, B R" uniqKey="Erickson B">B.R. Erickson</name>
</author>
<author><name sortKey="Comer, J A" uniqKey="Comer J">J.A. Comer</name>
</author>
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</TEI>
</pmc>
<pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia.</title>
<author><name sortKey="Lacroix, Audrey" sort="Lacroix, Audrey" uniqKey="Lacroix A" first="Audrey" last="Lacroix">Audrey Lacroix</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Duong, Veasna" sort="Duong, Veasna" uniqKey="Duong V" first="Veasna" last="Duong">Veasna Duong</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hul, Vibol" sort="Hul, Vibol" uniqKey="Hul V" first="Vibol" last="Hul">Vibol Hul</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="San, Sorn" sort="San, Sorn" uniqKey="San S" first="Sorn" last="San">Sorn San</name>
<affiliation wicri:level="1"><nlm:affiliation>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Davun, Hull" sort="Davun, Hull" uniqKey="Davun H" first="Hull" last="Davun">Hull Davun</name>
<affiliation wicri:level="1"><nlm:affiliation>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Omaliss, Keo" sort="Omaliss, Keo" uniqKey="Omaliss K" first="Keo" last="Omaliss">Keo Omaliss</name>
<affiliation wicri:level="1"><nlm:affiliation>Forest Administration, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Forest Administration, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chea, Sokha" sort="Chea, Sokha" uniqKey="Chea S" first="Sokha" last="Chea">Sokha Chea</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
<affiliation wicri:level="1"><nlm:affiliation>Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC</wicri:regionArea>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Theppangna, Watthana" sort="Theppangna, Watthana" uniqKey="Theppangna W" first="Watthana" last="Theppangna">Watthana Theppangna</name>
<affiliation><nlm:affiliation>National Animal Health Laboratory, Ministry of Agriculture Forestry and Fisheries, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic; Metabiota Inc., Vientiane, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E" last="Fine">Amanda E. Fine</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Vietnam Program, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Wildlife Conservation Society, Vietnam Program, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1"><nlm:affiliation>One Health Institute, School of Veterinary Medicine, University of California, Davis, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2"><nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O" last="Joly">Damien O. Joly</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Dussart, Philippe" sort="Dussart, Philippe" uniqKey="Dussart P" first="Philippe" last="Dussart">Philippe Dussart</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Afelt, Aneta" sort="Afelt, Aneta" uniqKey="Afelt A" first="Aneta" last="Afelt">Aneta Afelt</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland.</nlm:affiliation>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw</wicri:regionArea>
<wicri:noRegion>Warsaw</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Frutos, Roger" sort="Frutos, Roger" uniqKey="Frutos R" first="Roger" last="Frutos">Roger Frutos</name>
<affiliation wicri:level="3"><nlm:affiliation>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France; Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France. Electronic address: roger.frutos@ies.univ-montp2.fr.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France; Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore. Electronic address: buchyphilippe@hotmail.com.</nlm:affiliation>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; GSK Vaccines R&D, 150 Beach road, # 22-00, 189720</wicri:regionArea>
<wicri:noRegion>189720</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2017">2017</date>
<idno type="RBID">pubmed:27932284</idno>
<idno type="pmid">27932284</idno>
<idno type="doi">10.1016/j.meegid.2016.11.029</idno>
<idno type="wicri:Area/PubMed/Corpus">000B79</idno>
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</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia.</title>
<author><name sortKey="Lacroix, Audrey" sort="Lacroix, Audrey" uniqKey="Lacroix A" first="Audrey" last="Lacroix">Audrey Lacroix</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Duong, Veasna" sort="Duong, Veasna" uniqKey="Duong V" first="Veasna" last="Duong">Veasna Duong</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hul, Vibol" sort="Hul, Vibol" uniqKey="Hul V" first="Vibol" last="Hul">Vibol Hul</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="San, Sorn" sort="San, Sorn" uniqKey="San S" first="Sorn" last="San">Sorn San</name>
<affiliation wicri:level="1"><nlm:affiliation>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Davun, Hull" sort="Davun, Hull" uniqKey="Davun H" first="Hull" last="Davun">Hull Davun</name>
<affiliation wicri:level="1"><nlm:affiliation>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Omaliss, Keo" sort="Omaliss, Keo" uniqKey="Omaliss K" first="Keo" last="Omaliss">Keo Omaliss</name>
<affiliation wicri:level="1"><nlm:affiliation>Forest Administration, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Forest Administration, Ministry of Agriculture Forestry and Fisheries</wicri:regionArea>
<wicri:noRegion>Ministry of Agriculture Forestry and Fisheries</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Chea, Sokha" sort="Chea, Sokha" uniqKey="Chea S" first="Sokha" last="Chea">Sokha Chea</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
<affiliation wicri:level="1"><nlm:affiliation>Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC, France.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Muséum national d'Histoire naturelle, Institut de Systématique, Evolution, Biodiversité (ISYEB), UMR 7205 MNHN CNRS UPMC</wicri:regionArea>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
<wicri:noRegion>UMR 7205 MNHN CNRS UPMC</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Theppangna, Watthana" sort="Theppangna, Watthana" uniqKey="Theppangna W" first="Watthana" last="Theppangna">Watthana Theppangna</name>
<affiliation><nlm:affiliation>National Animal Health Laboratory, Ministry of Agriculture Forestry and Fisheries, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic; Metabiota Inc., Vientiane, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
<affiliation><nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E" last="Fine">Amanda E. Fine</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Vietnam Program, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Wildlife Conservation Society, Vietnam Program, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1"><nlm:affiliation>One Health Institute, School of Veterinary Medicine, University of California, Davis, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2"><nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O" last="Joly">Damien O. Joly</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1"><nlm:affiliation>Wildlife Conservation Society, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Wildlife Conservation Society</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Dussart, Philippe" sort="Dussart, Philippe" uniqKey="Dussart P" first="Philippe" last="Dussart">Philippe Dussart</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
<wicri:noRegion>Phnom Penh</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Afelt, Aneta" sort="Afelt, Aneta" uniqKey="Afelt A" first="Aneta" last="Afelt">Aneta Afelt</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw, Poland.</nlm:affiliation>
<country xml:lang="fr">Pologne</country>
<wicri:regionArea>Institute of Physical Geography, Faculty of Geography and Regional Studies, University of Warsaw, Warsaw</wicri:regionArea>
<wicri:noRegion>Warsaw</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Frutos, Roger" sort="Frutos, Roger" uniqKey="Frutos R" first="Roger" last="Frutos">Roger Frutos</name>
<affiliation wicri:level="3"><nlm:affiliation>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France; Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier, France. Electronic address: roger.frutos@ies.univ-montp2.fr.</nlm:affiliation>
<country xml:lang="fr">France</country>
<wicri:regionArea>Cirad, UMR 17, Cirad-Ird, TA-A17/G, Montpellier, France; Université de Montpellier, IES, UMR 5214, CNRS-UM, Montpellier</wicri:regionArea>
<placeName><region type="region">Occitanie (région administrative)</region>
<region type="old region">Languedoc-Roussillon</region>
<settlement type="city">Montpellier</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Buchy, Philippe" sort="Buchy, Philippe" uniqKey="Buchy P" first="Philippe" last="Buchy">Philippe Buchy</name>
<affiliation wicri:level="1"><nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; GSK Vaccines R&D, 150 Beach road, # 22-00, 189720, Singapore. Electronic address: buchyphilippe@hotmail.com.</nlm:affiliation>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia; GSK Vaccines R&D, 150 Beach road, # 22-00, 189720</wicri:regionArea>
<wicri:noRegion>189720</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</title>
<idno type="eISSN">1567-7257</idno>
<imprint><date when="2017" type="published">2017</date>
</imprint>
</series>
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<term>Base Sequence</term>
<term>Cambodia</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus (genetics)</term>
<term>Disease Reservoirs</term>
<term>Evolution, Molecular</term>
<term>Genes, Viral</term>
<term>Genetic Variation</term>
<term>Laos</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>RNA Replicase (genetics)</term>
<term>Sequence Analysis, DNA</term>
<term>Viral Proteins (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Cambodge</term>
<term>Chiroptera (virologie)</term>
<term>Coronavirus (génétique)</term>
<term>Gènes viraux</term>
<term>Laos</term>
<term>Phylogénie</term>
<term>Phylogéographie</term>
<term>Protéines virales (génétique)</term>
<term>RNA replicase (génétique)</term>
<term>Réservoirs d'agents pathogènes</term>
<term>Séquence nucléotidique</term>
<term>Variation génétique</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term>
<term>Viral Proteins</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term>
<term>Protéines virales</term>
<term>RNA replicase</term>
</keywords>
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</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Base Sequence</term>
<term>Cambodia</term>
<term>Disease Reservoirs</term>
<term>Evolution, Molecular</term>
<term>Genes, Viral</term>
<term>Genetic Variation</term>
<term>Laos</term>
<term>Phylogeny</term>
<term>Phylogeography</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Cambodge</term>
<term>Gènes viraux</term>
<term>Laos</term>
<term>Phylogénie</term>
<term>Phylogéographie</term>
<term>Réservoirs d'agents pathogènes</term>
<term>Séquence nucléotidique</term>
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<front><div type="abstract" xml:lang="en">South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family Pteropodidae) (n=55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from Pipistrellus coromandra fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 Myotis bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely Macroglossus sp., Megaerops niphanae and Myotis horsfieldii.</div>
</front>
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