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Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia.

Identifieur interne : 000B17 ( PubMed/Checkpoint ); précédent : 000B16; suivant : 000B18

Genetic diversity of coronaviruses in bats in Lao PDR and Cambodia.

Auteurs : Audrey Lacroix [Cambodge] ; Veasna Duong [Cambodge] ; Vibol Hul [Cambodge] ; Sorn San [Cambodge] ; Hull Davun [Cambodge] ; Keo Omaliss [Cambodge] ; Sokha Chea [Cambodge] ; Alexandre Hassanin [France] ; Watthana Theppangna ; Soubanh Silithammavong ; Kongsy Khammavong ; Sinpakone Singhalath ; Zoe Greatorex ; Amanda E. Fine [Viêt Nam] ; Tracey Goldstein [États-Unis] ; Sarah Olson [États-Unis] ; Damien O. Joly [Canada] ; Lucy Keatts [Cambodge] ; Philippe Dussart [Cambodge] ; Aneta Afelt [Pologne] ; Roger Frutos [France] ; Philippe Buchy [Singapour]

Source :

RBID : pubmed:27932284

Descripteurs français

English descriptors

Abstract

South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family Pteropodidae) (n=55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from Pipistrellus coromandra fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 Myotis bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely Macroglossus sp., Megaerops niphanae and Myotis horsfieldii.

DOI: 10.1016/j.meegid.2016.11.029
PubMed: 27932284


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pubmed:27932284

Le document en format XML

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<name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
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<name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
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<name sortKey="Dussart, Philippe" sort="Dussart, Philippe" uniqKey="Dussart P" first="Philippe" last="Dussart">Philippe Dussart</name>
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<name sortKey="Afelt, Aneta" sort="Afelt, Aneta" uniqKey="Afelt A" first="Aneta" last="Afelt">Aneta Afelt</name>
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<name sortKey="Frutos, Roger" sort="Frutos, Roger" uniqKey="Frutos R" first="Roger" last="Frutos">Roger Frutos</name>
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<name sortKey="Lacroix, Audrey" sort="Lacroix, Audrey" uniqKey="Lacroix A" first="Audrey" last="Lacroix">Audrey Lacroix</name>
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<nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
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<name sortKey="Duong, Veasna" sort="Duong, Veasna" uniqKey="Duong V" first="Veasna" last="Duong">Veasna Duong</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
<wicri:regionArea>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh</wicri:regionArea>
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<name sortKey="Hul, Vibol" sort="Hul, Vibol" uniqKey="Hul V" first="Vibol" last="Hul">Vibol Hul</name>
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<nlm:affiliation>Institut Pasteur du Cambodge, Virology Unit, Phnom Penh, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
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<name sortKey="San, Sorn" sort="San, Sorn" uniqKey="San S" first="Sorn" last="San">Sorn San</name>
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<nlm:affiliation>National Veterinary Research Institute, Ministry of Agriculture Forestry and Fisheries, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
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<name sortKey="Davun, Hull" sort="Davun, Hull" uniqKey="Davun H" first="Hull" last="Davun">Hull Davun</name>
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<name sortKey="Chea, Sokha" sort="Chea, Sokha" uniqKey="Chea S" first="Sokha" last="Chea">Sokha Chea</name>
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<name sortKey="Hassanin, Alexandre" sort="Hassanin, Alexandre" uniqKey="Hassanin A" first="Alexandre" last="Hassanin">Alexandre Hassanin</name>
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<country xml:lang="fr">France</country>
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<name sortKey="Theppangna, Watthana" sort="Theppangna, Watthana" uniqKey="Theppangna W" first="Watthana" last="Theppangna">Watthana Theppangna</name>
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<name sortKey="Silithammavong, Soubanh" sort="Silithammavong, Soubanh" uniqKey="Silithammavong S" first="Soubanh" last="Silithammavong">Soubanh Silithammavong</name>
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<nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic; Metabiota Inc., Vientiane, Lao Democratic People's Republic.</nlm:affiliation>
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</affiliation>
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<name sortKey="Khammavong, Kongsy" sort="Khammavong, Kongsy" uniqKey="Khammavong K" first="Kongsy" last="Khammavong">Kongsy Khammavong</name>
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<nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
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</affiliation>
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<name sortKey="Singhalath, Sinpakone" sort="Singhalath, Sinpakone" uniqKey="Singhalath S" first="Sinpakone" last="Singhalath">Sinpakone Singhalath</name>
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<nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
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<name sortKey="Greatorex, Zoe" sort="Greatorex, Zoe" uniqKey="Greatorex Z" first="Zoe" last="Greatorex">Zoe Greatorex</name>
<affiliation>
<nlm:affiliation>Wildlife Conservation Society, Lao Democratic People's Republic.</nlm:affiliation>
<wicri:noCountry code="subField">Lao Democratic People's Republic</wicri:noCountry>
</affiliation>
</author>
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<name sortKey="Fine, Amanda E" sort="Fine, Amanda E" uniqKey="Fine A" first="Amanda E" last="Fine">Amanda E. Fine</name>
<affiliation wicri:level="1">
<nlm:affiliation>Wildlife Conservation Society, Vietnam Program, Hanoi, Vietnam.</nlm:affiliation>
<country xml:lang="fr">Viêt Nam</country>
<wicri:regionArea>Wildlife Conservation Society, Vietnam Program, Hanoi</wicri:regionArea>
<wicri:noRegion>Hanoi</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Goldstein, Tracey" sort="Goldstein, Tracey" uniqKey="Goldstein T" first="Tracey" last="Goldstein">Tracey Goldstein</name>
<affiliation wicri:level="1">
<nlm:affiliation>One Health Institute, School of Veterinary Medicine, University of California, Davis, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>One Health Institute, School of Veterinary Medicine, University of California, Davis</wicri:regionArea>
<wicri:noRegion>Davis</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Olson, Sarah" sort="Olson, Sarah" uniqKey="Olson S" first="Sarah" last="Olson">Sarah Olson</name>
<affiliation wicri:level="2">
<nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
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<name sortKey="Joly, Damien O" sort="Joly, Damien O" uniqKey="Joly D" first="Damien O" last="Joly">Damien O. Joly</name>
<affiliation wicri:level="1">
<nlm:affiliation>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Wildlife Conservation Society, Wildlife Health Program, Bronx, New York, USA; Metabiota Inc., Nanaimo, British Columbia</wicri:regionArea>
<wicri:noRegion>British Columbia</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Keatts, Lucy" sort="Keatts, Lucy" uniqKey="Keatts L" first="Lucy" last="Keatts">Lucy Keatts</name>
<affiliation wicri:level="1">
<nlm:affiliation>Wildlife Conservation Society, Cambodia.</nlm:affiliation>
<country xml:lang="fr">Cambodge</country>
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<div type="abstract" xml:lang="en">South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family Pteropodidae) (n=55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from Pipistrellus coromandra fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 Myotis bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely Macroglossus sp., Megaerops niphanae and Myotis horsfieldii.</div>
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<AbstractText>South-East Asia is a hot spot for emerging zoonotic diseases, and bats have been recognized as hosts for a large number of zoonotic viruses such as Severe Acute Respiratory Syndrome (SARS), responsible for acute respiratory syndrome outbreaks. Thus, it is important to expand our knowledge of the presence of viruses in bats which could represent a risk to humans. Coronaviruses (CoVs) have been reported in bat species from Thailand, China, Indonesia, Taiwan and the Philippines. However no such work was conducted in Cambodia or Lao PDR. Between 2010 and 2013, 1965 bats were therefore sampled at interfaces with human populations in these two countries. They were tested for the presence of coronavirus by consensus reverse transcription-PCR assay. A total of 93 samples (4.7%) from 17 genera of bats tested positive. Sequence analysis revealed the presence of potentially 37 and 56 coronavirus belonging to alpha-coronavirus (αCoV) and beta-CoV (βCoV), respectively. The βCoVs group is known to include some coronaviruses highly pathogenic to human, such as SARS-CoV and MERS-CoV. All coronavirus sequences generated from frugivorous bats (family Pteropodidae) (n=55) clustered with other bat βCoVs of lineage D, whereas one coronavirus from Pipistrellus coromandra fell in the lineage C of βCoVs which also includes the MERS-CoV. αCoVs were all detected in various genera of insectivorous bats and clustered with diverse bat αCoV sequences previously published. A closely related strain of PEDV, responsible for severe diarrhea in pigs (PEDV-CoV), was detected in 2 Myotis bats. We highlighted the presence and the high diversity of coronaviruses circulating in bats from Cambodia and Lao PDR. Three new bat genera and species were newly identified as host of coronaviruses, namely Macroglossus sp., Megaerops niphanae and Myotis horsfieldii.</AbstractText>
<CopyrightInformation>Copyright © 2016 Elsevier B.V. All rights reserved.</CopyrightInformation>
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<ForeName>Audrey</ForeName>
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<ForeName>Veasna</ForeName>
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