Patterns of Evolutionary Conservation of Ascorbic Acid-Related Genes Following Whole-Genome Triplication in Brassica rapa
Identifieur interne : 000979 ( Main/Exploration ); précédent : 000978; suivant : 000980Patterns of Evolutionary Conservation of Ascorbic Acid-Related Genes Following Whole-Genome Triplication in Brassica rapa
Auteurs : Weike Duan [République populaire de Chine] ; Xiaoming Song [République populaire de Chine] ; Tongkun Liu [République populaire de Chine] ; Zhinan Huang [République populaire de Chine] ; Jun Ren [République populaire de Chine] ; Xilin Hou [République populaire de Chine] ; Jianchang Du [République populaire de Chine] ; Ying Li [République populaire de Chine]Source :
- Genome Biology and Evolution [ 1759-6653 ] ; 2014.
Abstract
Ascorbic acid (AsA) is an important antioxidant in plants and an essential vitamin for humans. Extending the study of AsA-related genes from
Url:
DOI: 10.1093/gbe/evu293
PubMed: 25552535
PubMed Central: 4316640
Affiliations:
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Le document en format XML
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<author><name sortKey="Li, Ying" sort="Li, Ying" uniqKey="Li Y" first="Ying" last="Li">Ying Li</name>
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<front><div type="abstract" xml:lang="en"><p>Ascorbic acid (AsA) is an important antioxidant in plants and an essential vitamin for humans. Extending the study of AsA-related genes from <italic>Arabidopsis thaliana</italic>
to <italic>Brassica rapa</italic>
could shed light on the evolution of AsA in plants and inform crop breeding. In this study, we conducted whole-genome annotation, molecular-evolution and gene-expression analyses of all known AsA-related genes in <italic>B. rapa</italic>
. The nucleobase–ascorbate transporter (NAT) gene family and AsA <sc>l</sc>
-galactose pathway genes were also compared among plant species. Four important insights gained are that: 1) 102 AsA-related gene were identified in <italic>B. rapa</italic>
and they mainly diverged 12–18 Ma accompanied by the <italic>Brassica</italic>
-specific genome triplication event; 2) during their evolution, these AsA-related genes were preferentially retained, consistent with the gene dosage hypothesis; 3) the putative proteins were highly conserved, but their expression patterns varied; and 4) although the number of AsA-related genes is higher in <italic>B. rapa</italic>
than in <italic>A. thaliana</italic>
, the AsA contents and the numbers of expressed genes in leaves of both species are similar, the genes that are not generally expressed may serve as substitutes during emergencies. In summary, this study provides genome-wide insights into evolutionary history and mechanisms of AsA-related genes following whole-genome triplication in <italic>B. rapa</italic>
.</p>
</div>
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<affiliations><list><country><li>République populaire de Chine</li>
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<name sortKey="Du, Jianchang" sort="Du, Jianchang" uniqKey="Du J" first="Jianchang" last="Du">Jianchang Du</name>
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