Detection of severe acute respiratory syndrome coronavirus in stool specimens by commercially available real-time reverse transcriptase PCR assays.
Identifieur interne : 003F27 ( Main/Exploration ); précédent : 003F26; suivant : 003F28Detection of severe acute respiratory syndrome coronavirus in stool specimens by commercially available real-time reverse transcriptase PCR assays.
Auteurs : L. Louie [Canada] ; A E Simor ; S. Chong ; K. Luinstra ; A. Petrich ; J. Mahony ; M. Smieja ; G. Johnson ; F. Gharabaghi ; R. Tellier ; B M Willey ; S. Poutanen ; T. Mazzulli ; G. Broukhanski ; F. Jamieson ; M. Louie ; S. RichardsonSource :
- Journal of clinical microbiology [ 0095-1137 ] ; 2006.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus du SRAS.
- isolement et purification : ARN viral, Virus du SRAS.
- virologie : Fèces.
- Humains, RT-PCR, Sensibilité et spécificité.
English descriptors
- KwdEn :
- MESH :
- chemical , isolation & purification : RNA, Viral.
- genetics : SARS Virus.
- isolation & purification : SARS Virus.
- methods : Reverse Transcriptase Polymerase Chain Reaction.
- virology : Feces.
- Humans, Sensitivity and Specificity.
Abstract
Three commercially available real-time reverse transcriptase PCR assays (the Artus RealArt HPA coronavirus LightCycler, the Artus RealArt HPA coronavirus Rotor-Gene, and the EraGen severe acute respiratory syndrome coronavirus POL assay) and three RNA extraction methodologies were evaluated for the detection of severe acute respiratory syndrome coronavirus RNA from 91 stool specimens. The assays' sensitivities were highest (58% to 75%) for specimens obtained 8 to 21 days after symptom onset. The assays were less sensitive when specimens were obtained less than 8 days or more than 21 days after the onset of symptoms. All assays were 100% specific.
DOI: 10.1128/JCM.01202-06
PubMed: 16943352
Affiliations:
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Le document en format XML
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<term>SARS Virus (genetics)</term>
<term>SARS Virus (isolation & purification)</term>
<term>Sensitivity and Specificity</term>
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<front><div type="abstract" xml:lang="en">Three commercially available real-time reverse transcriptase PCR assays (the Artus RealArt HPA coronavirus LightCycler, the Artus RealArt HPA coronavirus Rotor-Gene, and the EraGen severe acute respiratory syndrome coronavirus POL assay) and three RNA extraction methodologies were evaluated for the detection of severe acute respiratory syndrome coronavirus RNA from 91 stool specimens. The assays' sensitivities were highest (58% to 75%) for specimens obtained 8 to 21 days after symptom onset. The assays were less sensitive when specimens were obtained less than 8 days or more than 21 days after the onset of symptoms. All assays were 100% specific.</div>
</front>
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<affiliations><list><country><li>Canada</li>
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<tree><noCountry><name sortKey="Broukhanski, G" sort="Broukhanski, G" uniqKey="Broukhanski G" first="G" last="Broukhanski">G. Broukhanski</name>
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<name sortKey="Gharabaghi, F" sort="Gharabaghi, F" uniqKey="Gharabaghi F" first="F" last="Gharabaghi">F. Gharabaghi</name>
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<name sortKey="Johnson, G" sort="Johnson, G" uniqKey="Johnson G" first="G" last="Johnson">G. Johnson</name>
<name sortKey="Louie, M" sort="Louie, M" uniqKey="Louie M" first="M" last="Louie">M. Louie</name>
<name sortKey="Luinstra, K" sort="Luinstra, K" uniqKey="Luinstra K" first="K" last="Luinstra">K. Luinstra</name>
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