Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry
Identifieur interne : 003919 ( Main/Exploration ); précédent : 003918; suivant : 003920Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry
Auteurs : Rangarajan Sampath [États-Unis] ; Thomas A. Hall [États-Unis] ; Christian Massire [États-Unis] ; Feng Li [États-Unis] ; Lawrence B. Blyn [États-Unis] ; Mark W. Eshoo [États-Unis] ; Steven A. Hofstadler [États-Unis] ; David J. Ecker [États-Unis]Source :
- Annals of the New York Academy of Sciences [ 0077-8923 ] ; 2007-04.
Descripteurs français
- KwdFr :
- Contrôle des maladies contagieuses (), Humains, Maladies transmissibles émergentes (diagnostic), Maladies transmissibles émergentes (microbiologie), Maladies transmissibles émergentes (parasitologie), Maladies transmissibles émergentes (virologie), Maladies virales (diagnostic), Maladies virales (virologie), Réaction de polymérisation en chaîne (), Spectrométrie de masse ESI (), Virus (isolement et purification).
- MESH :
- diagnostic : Maladies transmissibles émergentes, Maladies virales.
- isolement et purification : Virus.
- microbiologie : Maladies transmissibles émergentes.
- parasitologie : Maladies transmissibles émergentes.
- virologie : Maladies transmissibles émergentes, Maladies virales.
- Contrôle des maladies contagieuses, Humains, Réaction de polymérisation en chaîne, Spectrométrie de masse ESI.
English descriptors
- KwdEn :
- Communicable Disease Control (methods), Communicable Diseases, Emerging (diagnosis), Communicable Diseases, Emerging (microbiology), Communicable Diseases, Emerging (parasitology), Communicable Diseases, Emerging (virology), Humans, Polymerase Chain Reaction (methods), Spectrometry, Mass, Electrospray Ionization (methods), Virus Diseases (diagnosis), Virus Diseases (virology), Viruses (isolation & purification).
- MESH :
- diagnosis : Communicable Diseases, Emerging, Virus Diseases.
- isolation & purification : Viruses.
- methods : Communicable Disease Control, Polymerase Chain Reaction, Spectrometry, Mass, Electrospray Ionization.
- microbiology : Communicable Diseases, Emerging.
- parasitology : Communicable Diseases, Emerging.
- virology : Communicable Diseases, Emerging, Virus Diseases.
- Humans.
Abstract
Abstract: Newly emergent infectious diseases are a global public health problem. The population dense regions of Southeast Asia are the epicenter of many emerging diseases, as evidenced by the outbreak of Nipah, SARS, avian influenza (H5N1), Dengue, and enterovirus 71 in this region in the past decade. Rapid identification, epidemiologic surveillance, and mitigation of transmission are major challenges in ensuring public health safety. Here we describe a powerful new approach for infectious disease surveillance that is based on polymerase chain reaction (PCR) to amplify nucleic acid targets from large groupings of organisms, electrospray ionization mass spectrometry (ESI‐MS) for accurate mass measurements of the PCR products, and base composition signature analysis to identify organisms in a sample. This approach is capable of automated analysis of more than 1,500 PCR reactions a day. It is applicable to the surveillance of bacterial, viral, fungal, or protozoal pathogens and will facilitate rapid characterization of known and emerging pathogens.
Url:
- https://api.istex.fr/ark:/67375/WNG-X80JPK8M-5/fulltext.pdf
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7167958
DOI: 10.1196/annals.1408.008
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: 000395
- to stream Istex, to step Curation: 000395
- to stream Istex, to step Checkpoint: 001262
- to stream Pmc, to step Corpus: 000D84
- to stream Pmc, to step Curation: 000D84
- to stream Pmc, to step Checkpoint: 000F13
- to stream Ncbi, to step Merge: 003F82
- to stream Ncbi, to step Curation: 003F82
- to stream Ncbi, to step Checkpoint: 003F82
- to stream PubMed, to step Corpus: 001E28
- to stream PubMed, to step Curation: 001E28
- to stream PubMed, to step Checkpoint: 001D23
- to stream Ncbi, to step Merge: 001948
- to stream Ncbi, to step Curation: 001948
- to stream Ncbi, to step Checkpoint: 001948
- to stream Main, to step Merge: 003A73
- to stream Main, to step Curation: 003919
Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry</title><author><name sortKey="Sampath, Rangarajan" sort="Sampath, Rangarajan" uniqKey="Sampath R" first="Rangarajan" last="Sampath">Rangarajan Sampath</name></author><author><name sortKey="Hall, Thomas A" sort="Hall, Thomas A" uniqKey="Hall T" first="Thomas A." last="Hall">Thomas A. Hall</name></author><author><name sortKey="Massire, Christian" sort="Massire, Christian" uniqKey="Massire C" first="Christian" last="Massire">Christian Massire</name></author><author><name sortKey="Li, Feng" sort="Li, Feng" uniqKey="Li F" first="Feng" last="Li">Feng Li</name></author><author><name sortKey="Blyn, Lawrence B" sort="Blyn, Lawrence B" uniqKey="Blyn L" first="Lawrence B." last="Blyn">Lawrence B. Blyn</name></author><author><name sortKey="Eshoo, Mark W" sort="Eshoo, Mark W" uniqKey="Eshoo M" first="Mark W." last="Eshoo">Mark W. Eshoo</name></author><author><name sortKey="Hofstadler, Steven A" sort="Hofstadler, Steven A" uniqKey="Hofstadler S" first="Steven A." last="Hofstadler">Steven A. Hofstadler</name></author><author><name sortKey="Ecker, David J" sort="Ecker, David J" uniqKey="Ecker D" first="David J." last="Ecker">David J. Ecker</name></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:F2E1425B83FEDF89A3D87495B7295737F99B824C</idno><date when="2007" year="2007">2007</date><idno type="doi">10.1196/annals.1408.008</idno><idno type="url">https://api.istex.fr/ark:/67375/WNG-X80JPK8M-5/fulltext.pdf</idno><idno type="wicri:Area/Istex/Corpus">000395</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000395</idno><idno type="wicri:Area/Istex/Curation">000395</idno><idno type="wicri:Area/Istex/Checkpoint">001262</idno><idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">001262</idno><idno type="wicri:doubleKey">0077-8923:2007:Sampath R:rapid:identification:of</idno><idno type="wicri:source">PMC</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7167958</idno><idno type="RBID">PMC:7167958</idno><idno type="wicri:Area/Pmc/Corpus">000D84</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000D84</idno><idno type="wicri:Area/Pmc/Curation">000D84</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000D84</idno><idno type="wicri:Area/Pmc/Checkpoint">000F13</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000F13</idno><idno type="wicri:Area/Ncbi/Merge">003F82</idno><idno type="wicri:Area/Ncbi/Curation">003F82</idno><idno type="wicri:Area/Ncbi/Checkpoint">003F82</idno><idno type="wicri:doubleKey">0077-8923:2007:Sampath R:rapid:identification:of</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:17470915</idno><idno type="wicri:Area/PubMed/Corpus">001E28</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001E28</idno><idno type="wicri:Area/PubMed/Curation">001E28</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001E28</idno><idno type="wicri:Area/PubMed/Checkpoint">001D23</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001D23</idno><idno type="wicri:Area/Ncbi/Merge">001948</idno><idno type="wicri:Area/Ncbi/Curation">001948</idno><idno type="wicri:Area/Ncbi/Checkpoint">001948</idno><idno type="wicri:doubleKey">0077-8923:2007:Sampath R:rapid:identification:of</idno><idno type="wicri:Area/Main/Merge">003A73</idno><idno type="wicri:Area/Main/Curation">003919</idno><idno type="wicri:Area/Main/Exploration">003919</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main">Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry</title><author><name sortKey="Sampath, Rangarajan" sort="Sampath, Rangarajan" uniqKey="Sampath R" first="Rangarajan" last="Sampath">Rangarajan Sampath</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Hall, Thomas A" sort="Hall, Thomas A" uniqKey="Hall T" first="Thomas A." last="Hall">Thomas A. Hall</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Massire, Christian" sort="Massire, Christian" uniqKey="Massire C" first="Christian" last="Massire">Christian Massire</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Li, Feng" sort="Li, Feng" uniqKey="Li F" first="Feng" last="Li">Feng Li</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Blyn, Lawrence B" sort="Blyn, Lawrence B" uniqKey="Blyn L" first="Lawrence B." last="Blyn">Lawrence B. Blyn</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Eshoo, Mark W" sort="Eshoo, Mark W" uniqKey="Eshoo M" first="Mark W." last="Eshoo">Mark W. Eshoo</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Hofstadler, Steven A" sort="Hofstadler, Steven A" uniqKey="Hofstadler S" first="Steven A." last="Hofstadler">Steven A. Hofstadler</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Ecker, David J" sort="Ecker, David J" uniqKey="Ecker D" first="David J." last="Ecker">David J. Ecker</name><affiliation wicri:level="2"><country xml:lang="fr">États-Unis</country><wicri:regionArea>Ibis Biosciences, Inc., a Subsidiary of Isis Pharmaceuticals, Carlsbad, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Annals of the New York Academy of Sciences</title><title level="j" type="alt">ANNALS OF NEW YORK ACADEMY SCIENCES</title><idno type="ISSN">0077-8923</idno><idno type="eISSN">1749-6632</idno><imprint><biblScope unit="vol">1102</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="109">109</biblScope><biblScope unit="page" to="120">120</biblScope><biblScope unit="page-count">12</biblScope><publisher>Blackwell Publishing Inc</publisher><pubPlace>Malden, USA</pubPlace><date type="published" when="2007-04">2007-04</date></imprint><idno type="ISSN">0077-8923</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0077-8923</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Communicable Disease Control (methods)</term><term>Communicable Diseases, Emerging (diagnosis)</term><term>Communicable Diseases, Emerging (microbiology)</term><term>Communicable Diseases, Emerging (parasitology)</term><term>Communicable Diseases, Emerging (virology)</term><term>Humans</term><term>Polymerase Chain Reaction (methods)</term><term>Spectrometry, Mass, Electrospray Ionization (methods)</term><term>Virus Diseases (diagnosis)</term><term>Virus Diseases (virology)</term><term>Viruses (isolation & purification)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Contrôle des maladies contagieuses ()</term><term>Humains</term><term>Maladies transmissibles émergentes (diagnostic)</term><term>Maladies transmissibles émergentes (microbiologie)</term><term>Maladies transmissibles émergentes (parasitologie)</term><term>Maladies transmissibles émergentes (virologie)</term><term>Maladies virales (diagnostic)</term><term>Maladies virales (virologie)</term><term>Réaction de polymérisation en chaîne ()</term><term>Spectrométrie de masse ESI ()</term><term>Virus (isolement et purification)</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Communicable Diseases, Emerging</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Maladies transmissibles émergentes</term><term>Maladies virales</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Communicable Disease Control</term><term>Polymerase Chain Reaction</term><term>Spectrometry, Mass, Electrospray Ionization</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies transmissibles émergentes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Communicable Diseases, Emerging</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Maladies transmissibles émergentes</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Communicable Diseases, Emerging</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Maladies transmissibles émergentes</term><term>Maladies virales</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Communicable Diseases, Emerging</term><term>Virus Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Humans</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Contrôle des maladies contagieuses</term><term>Humains</term><term>Réaction de polymérisation en chaîne</term><term>Spectrométrie de masse ESI</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: Newly emergent infectious diseases are a global public health problem. The population dense regions of Southeast Asia are the epicenter of many emerging diseases, as evidenced by the outbreak of Nipah, SARS, avian influenza (H5N1), Dengue, and enterovirus 71 in this region in the past decade. Rapid identification, epidemiologic surveillance, and mitigation of transmission are major challenges in ensuring public health safety. Here we describe a powerful new approach for infectious disease surveillance that is based on polymerase chain reaction (PCR) to amplify nucleic acid targets from large groupings of organisms, electrospray ionization mass spectrometry (ESI‐MS) for accurate mass measurements of the PCR products, and base composition signature analysis to identify organisms in a sample. This approach is capable of automated analysis of more than 1,500 PCR reactions a day. It is applicable to the surveillance of bacterial, viral, fungal, or protozoal pathogens and will facilitate rapid characterization of known and emerging pathogens.</div></front></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><country name="États-Unis"><region name="Californie"><name sortKey="Sampath, Rangarajan" sort="Sampath, Rangarajan" uniqKey="Sampath R" first="Rangarajan" last="Sampath">Rangarajan Sampath</name></region><name sortKey="Blyn, Lawrence B" sort="Blyn, Lawrence B" uniqKey="Blyn L" first="Lawrence B." last="Blyn">Lawrence B. Blyn</name><name sortKey="Ecker, David J" sort="Ecker, David J" uniqKey="Ecker D" first="David J." last="Ecker">David J. Ecker</name><name sortKey="Eshoo, Mark W" sort="Eshoo, Mark W" uniqKey="Eshoo M" first="Mark W." last="Eshoo">Mark W. Eshoo</name><name sortKey="Hall, Thomas A" sort="Hall, Thomas A" uniqKey="Hall T" first="Thomas A." last="Hall">Thomas A. Hall</name><name sortKey="Hofstadler, Steven A" sort="Hofstadler, Steven A" uniqKey="Hofstadler S" first="Steven A." last="Hofstadler">Steven A. Hofstadler</name><name sortKey="Li, Feng" sort="Li, Feng" uniqKey="Li F" first="Feng" last="Li">Feng Li</name><name sortKey="Massire, Christian" sort="Massire, Christian" uniqKey="Massire C" first="Christian" last="Massire">Christian Massire</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 003919 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 003919 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= ISTEX:F2E1425B83FEDF89A3D87495B7295737F99B824C
|texte= Rapid Identification of Emerging Infectious Agents Using PCR and Electrospray Ionization Mass Spectrometry
}}
| This area was generated with Dilib version V0.6.33. |  |