Extensive diversity of coronaviruses in bats from China
Identifieur interne : 000E33 ( Main/Exploration ); précédent : 000E32; suivant : 000E34Extensive diversity of coronaviruses in bats from China
Auteurs : Xian-Dan Lin [République populaire de Chine] ; Wen Wang [République populaire de Chine] ; Zong-Yu Hao [République populaire de Chine] ; Zhao-Xiao Wang [République populaire de Chine] ; Wen-Ping Guo [République populaire de Chine] ; Xiao-Qing Guan [République populaire de Chine] ; Miao-Ruo Wang [République populaire de Chine] ; Hong-Wei Wang [République populaire de Chine] ; Run-Hong Zhou [République populaire de Chine] ; Ming-Hui Li [République populaire de Chine] ; Guang-Peng Tang [République populaire de Chine] ; Jun Wu [République populaire de Chine] ; Edward C. Holmes [Australie] ; Yong-Zhen Zhang [République populaire de Chine]Source :
- Virology [ 0042-6822 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ARN viral, Coronavirus.
- isolement et purification : Coronavirus.
- virologie : Chiroptera.
- Animaux, Chine, Coronavirus, Génome viral, Phylogénie, Variation génétique.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Viral.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- virology : Chiroptera.
- Animals, China, Genetic Variation, Genome, Viral, Phylogeny.
Abstract
To help reveal the diversity and evolution of bat coronaviruses we collected 1067 bats from 21 species in China. A total of 73 coronaviruses (32 alphacoronaviruses and 41 betacoronaviruses) were identified in these bats, with an overall prevalence of 6.84%. All newly-identified betacoronaviruses were SARS-related Rhinolophus bat coronaviruses (SARSr-Rh-BatCoV). Importantly, with the exception of the S gene, the genome sequences of the SARSr-Rh-BatCoVs sampled in Guizhou province were closely related to SARS-related human coronavirus. Additionally, the newly-identified alphacoronaviruses exhibited high genetic diversity and some may represent novel species. Our phylogenetic analyses also provided insights into the transmission of these viruses among bat species, revealing a general clustering by geographic location rather than by bat species. Inter-species transmission among bats from the same genus was also commonplace in both the alphacoronaviruses and betacoronaviruses. Overall, these data suggest that high contact rates among specific bat species enable the acquisition and spread of coronaviruses.
Url:
DOI: 10.1016/j.virol.2017.03.019
PubMed: 28384506
PubMed Central: 7111643
Affiliations:
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National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Ming Hui" sort="Li, Ming Hui" uniqKey="Li M" first="Ming-Hui" last="Li">Ming-Hui Li</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Guang Peng" sort="Tang, Guang Peng" uniqKey="Tang G" first="Guang-Peng" last="Tang">Guang-Peng Tang</name><affiliation wicri:level="1"><nlm:aff id="aff0020">Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province</wicri:regionArea><wicri:noRegion>Guizhou Province</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><affiliation wicri:level="1"><nlm:aff id="aff0035">Jiyuan Center for Disease Control and Prevention, Jiyuan, Henan Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Jiyuan Center for Disease Control and Prevention, Jiyuan, Henan Province</wicri:regionArea><wicri:noRegion>Henan Province</wicri:noRegion></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. 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Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="aff0010">Wenzhou Center for Disease Control and Prevention, Wenzhou, Zhejiang Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Wenzhou Center for Disease Control and Prevention, Wenzhou, Zhejiang Province</wicri:regionArea><wicri:noRegion>Zhejiang Province</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Wen" sort="Wang, Wen" uniqKey="Wang W" first="Wen" last="Wang">Wen Wang</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Hao, Zong Yu" sort="Hao, Zong Yu" uniqKey="Hao Z" first="Zong-Yu" last="Hao">Zong-Yu Hao</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Henan Center for Disease Control and Prevention, Zhengzhou, Henan Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Henan Center for Disease Control and Prevention, Zhengzhou, Henan Province</wicri:regionArea><wicri:noRegion>Henan Province</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Zhao Xiao" sort="Wang, Zhao Xiao" uniqKey="Wang Z" first="Zhao-Xiao" last="Wang">Zhao-Xiao Wang</name><affiliation wicri:level="1"><nlm:aff id="aff0020">Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province</wicri:regionArea><wicri:noRegion>Guizhou Province</wicri:noRegion></affiliation></author><author><name sortKey="Guo, Wen Ping" sort="Guo, Wen Ping" uniqKey="Guo W" first="Wen-Ping" last="Guo">Wen-Ping Guo</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Guan, Xiao Qing" sort="Guan, Xiao Qing" uniqKey="Guan X" first="Xiao-Qing" last="Guan">Xiao-Qing Guan</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Wang, Miao Ruo" sort="Wang, Miao Ruo" uniqKey="Wang M" first="Miao-Ruo" last="Wang">Miao-Ruo Wang</name><affiliation wicri:level="1"><nlm:aff id="aff0025">Longquan Center for Disease Control and Prevention, Longquan, Zhejiang Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Longquan Center for Disease Control and Prevention, Longquan, Zhejiang Province</wicri:regionArea><wicri:noRegion>Zhejiang Province</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Hong Wei" sort="Wang, Hong Wei" uniqKey="Wang H" first="Hong-Wei" last="Wang">Hong-Wei Wang</name><affiliation wicri:level="1"><nlm:aff id="aff0030">Neixiang Center for Disease Control and Prevention, Neixiang, Henan Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Neixiang Center for Disease Control and Prevention, Neixiang, Henan Province</wicri:regionArea><wicri:noRegion>Henan Province</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Run Hong" sort="Zhou, Run Hong" uniqKey="Zhou R" first="Run-Hong" last="Zhou">Run-Hong Zhou</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Ming Hui" sort="Li, Ming Hui" uniqKey="Li M" first="Ming-Hui" last="Li">Ming-Hui Li</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Tang, Guang Peng" sort="Tang, Guang Peng" uniqKey="Tang G" first="Guang-Peng" last="Tang">Guang-Peng Tang</name><affiliation wicri:level="1"><nlm:aff id="aff0020">Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province</wicri:regionArea><wicri:noRegion>Guizhou Province</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><affiliation wicri:level="1"><nlm:aff id="aff0035">Jiyuan Center for Disease Control and Prevention, Jiyuan, Henan Province, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Jiyuan Center for Disease Control and Prevention, Jiyuan, Henan Province</wicri:regionArea><wicri:noRegion>Henan Province</wicri:noRegion></affiliation></author><author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. Holmes</name><affiliation wicri:level="4"><nlm:aff id="aff0040">Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006</wicri:regionArea><orgName type="university">Université de Sydney</orgName><placeName><settlement type="city">Sydney</settlement><region type="état">Nouvelle-Galles du Sud</region></placeName></affiliation></author><author><name sortKey="Zhang, Yong Zhen" sort="Zhang, Yong Zhen" uniqKey="Zhang Y" first="Yong-Zhen" last="Zhang">Yong-Zhen Zhang</name><affiliation wicri:level="3"><nlm:aff id="aff0005">State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">Virology</title><idno type="ISSN">0042-6822</idno><idno type="eISSN">1096-0341</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>China</term><term>Chiroptera (virology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Phylogeny</term><term>RNA, Viral (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Animaux</term><term>Chine</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Phylogénie</term><term>Variation génétique</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>China</term><term>Genetic Variation</term><term>Genome, Viral</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Chine</term><term>Coronavirus</term><term>Génome viral</term><term>Phylogénie</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>To help reveal the diversity and evolution of bat coronaviruses we collected 1067 bats from 21 species in China. A total of 73 coronaviruses (32 alphacoronaviruses and 41 betacoronaviruses) were identified in these bats, with an overall prevalence of 6.84%. All newly-identified betacoronaviruses were SARS-related Rhinolophus bat coronaviruses (SARSr-Rh-BatCoV). Importantly, with the exception of the S gene, the genome sequences of the SARSr-Rh-BatCoVs sampled in Guizhou province were closely related to SARS-related human coronavirus. Additionally, the newly-identified alphacoronaviruses exhibited high genetic diversity and some may represent novel species. Our phylogenetic analyses also provided insights into the transmission of these viruses among bat species, revealing a general clustering by geographic location rather than by bat species. Inter-species transmission among bats from the same genus was also commonplace in both the alphacoronaviruses and betacoronaviruses. 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Zhang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>République populaire de Chine</li></country><region><li>Nouvelle-Galles du Sud</li></region><settlement><li>Pékin</li><li>Sydney</li></settlement><orgName><li>Université de Sydney</li></orgName></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Lin, Xian Dan" sort="Lin, Xian Dan" uniqKey="Lin X" first="Xian-Dan" last="Lin">Xian-Dan Lin</name></noRegion><name sortKey="Guan, Xiao Qing" sort="Guan, Xiao Qing" uniqKey="Guan X" first="Xiao-Qing" last="Guan">Xiao-Qing Guan</name><name sortKey="Guo, Wen Ping" sort="Guo, Wen Ping" uniqKey="Guo W" first="Wen-Ping" last="Guo">Wen-Ping Guo</name><name sortKey="Hao, Zong Yu" sort="Hao, Zong Yu" uniqKey="Hao Z" first="Zong-Yu" last="Hao">Zong-Yu Hao</name><name sortKey="Li, Ming Hui" sort="Li, Ming Hui" uniqKey="Li M" first="Ming-Hui" last="Li">Ming-Hui Li</name><name sortKey="Lin, Xian Dan" sort="Lin, Xian Dan" uniqKey="Lin X" first="Xian-Dan" last="Lin">Xian-Dan Lin</name><name sortKey="Tang, Guang Peng" sort="Tang, Guang Peng" uniqKey="Tang G" first="Guang-Peng" last="Tang">Guang-Peng Tang</name><name sortKey="Wang, Hong Wei" sort="Wang, Hong Wei" uniqKey="Wang H" first="Hong-Wei" last="Wang">Hong-Wei Wang</name><name sortKey="Wang, Miao Ruo" sort="Wang, Miao Ruo" uniqKey="Wang M" first="Miao-Ruo" last="Wang">Miao-Ruo Wang</name><name sortKey="Wang, Wen" sort="Wang, Wen" uniqKey="Wang W" first="Wen" last="Wang">Wen Wang</name><name sortKey="Wang, Zhao Xiao" sort="Wang, Zhao Xiao" uniqKey="Wang Z" first="Zhao-Xiao" last="Wang">Zhao-Xiao Wang</name><name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name><name sortKey="Zhang, Yong Zhen" sort="Zhang, Yong Zhen" uniqKey="Zhang Y" first="Yong-Zhen" last="Zhang">Yong-Zhen Zhang</name><name sortKey="Zhou, Run Hong" sort="Zhou, Run Hong" uniqKey="Zhou R" first="Run-Hong" last="Zhou">Run-Hong Zhou</name></country><country name="Australie"><region name="Nouvelle-Galles du Sud"><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C." last="Holmes">Edward C. 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