SrasV1, PubMed, Checkpoint, bibRecord, 000B21

Extensive diversity of coronaviruses in bats from China.

Identifieur interne : 000B21 ( PubMed/Checkpoint ); précédent : 000B20; suivant : 000B22

Extensive diversity of coronaviruses in bats from China.

Source :

Virology [ 1096-0341 ] ; 2017.

RBID : pubmed:28384506

Descripteurs français

KwdFr :
- ARN viral (génétique), Animaux, Chine, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Génome viral, Phylogénie, Variation génétique.
MESH :
- génétique : ARN viral, Coronavirus.
- isolement et purification : Coronavirus.
- virologie : Chiroptera.
- Animaux, Chine, Coronavirus, Génome viral, Phylogénie, Variation génétique.

English descriptors

KwdEn :
- Animals, China, Chiroptera (virology), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Genetic Variation, Genome, Viral, Phylogeny, RNA, Viral (genetics).
MESH :
- chemical , genetics : RNA, Viral.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- virology : Chiroptera.
- Animals, China, Genetic Variation, Genome, Viral, Phylogeny.

Abstract

To help reveal the diversity and evolution of bat coronaviruses we collected 1067 bats from 21 species in China. A total of 73 coronaviruses (32 alphacoronaviruses and 41 betacoronaviruses) were identified in these bats, with an overall prevalence of 6.84%. All newly-identified betacoronaviruses were SARS-related Rhinolophus bat coronaviruses (SARSr-Rh-BatCoV). Importantly, with the exception of the S gene, the genome sequences of the SARSr-Rh-BatCoVs sampled in Guizhou province were closely related to SARS-related human coronavirus. Additionally, the newly-identified alphacoronaviruses exhibited high genetic diversity and some may represent novel species. Our phylogenetic analyses also provided insights into the transmission of these viruses among bat species, revealing a general clustering by geographic location rather than by bat species. Inter-species transmission among bats from the same genus was also commonplace in both the alphacoronaviruses and betacoronaviruses. Overall, these data suggest that high contact rates among specific bat species enable the acquisition and spread of coronaviruses.

DOI: 10.1016/j.virol.2017.03.019
PubMed: 28384506

Affiliations:

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Le document en format XML

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<term>China</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus (classification)</term>
<term>Coronavirus (genetics)</term>
<term>Coronavirus (isolation & purification)</term>
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<term>Coronavirus (génétique)</term>
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<term>Variation génétique</term>
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<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>China</term>
<term>Genetic Variation</term>
<term>Genome, Viral</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Chine</term>
<term>Coronavirus</term>
<term>Génome viral</term>
<term>Phylogénie</term>
<term>Variation génétique</term>
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<front><div type="abstract" xml:lang="en">To help reveal the diversity and evolution of bat coronaviruses we collected 1067 bats from 21 species in China. A total of 73 coronaviruses (32 alphacoronaviruses and 41 betacoronaviruses) were identified in these bats, with an overall prevalence of 6.84%. All newly-identified betacoronaviruses were SARS-related Rhinolophus bat coronaviruses (SARSr-Rh-BatCoV). Importantly, with the exception of the S gene, the genome sequences of the SARSr-Rh-BatCoVs sampled in Guizhou province were closely related to SARS-related human coronavirus. Additionally, the newly-identified alphacoronaviruses exhibited high genetic diversity and some may represent novel species. Our phylogenetic analyses also provided insights into the transmission of these viruses among bat species, revealing a general clustering by geographic location rather than by bat species. Inter-species transmission among bats from the same genus was also commonplace in both the alphacoronaviruses and betacoronaviruses. Overall, these data suggest that high contact rates among specific bat species enable the acquisition and spread of coronaviruses.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28384506</PMID>
<DateCompleted><Year>2017</Year>
<Month>07</Month>
<Day>17</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>04</Month>
<Day>07</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1096-0341</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>507</Volume>
<PubDate><Year>2017</Year>
<Month>07</Month>
</PubDate>
</JournalIssue>
<Title>Virology</Title>
<ISOAbbreviation>Virology</ISOAbbreviation>
</Journal>
<ArticleTitle>Extensive diversity of coronaviruses in bats from China.</ArticleTitle>
<Pagination><MedlinePgn>1-10</MedlinePgn>
</Pagination>
<ELocationID EIdType="pii" ValidYN="Y">S0042-6822(17)30100-9</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.virol.2017.03.019</ELocationID>
<Abstract><AbstractText>To help reveal the diversity and evolution of bat coronaviruses we collected 1067 bats from 21 species in China. A total of 73 coronaviruses (32 alphacoronaviruses and 41 betacoronaviruses) were identified in these bats, with an overall prevalence of 6.84%. All newly-identified betacoronaviruses were SARS-related Rhinolophus bat coronaviruses (SARSr-Rh-BatCoV). Importantly, with the exception of the S gene, the genome sequences of the SARSr-Rh-BatCoVs sampled in Guizhou province were closely related to SARS-related human coronavirus. Additionally, the newly-identified alphacoronaviruses exhibited high genetic diversity and some may represent novel species. Our phylogenetic analyses also provided insights into the transmission of these viruses among bat species, revealing a general clustering by geographic location rather than by bat species. Inter-species transmission among bats from the same genus was also commonplace in both the alphacoronaviruses and betacoronaviruses. Overall, these data suggest that high contact rates among specific bat species enable the acquisition and spread of coronaviruses.</AbstractText>
<CopyrightInformation>Copyright © 2017 Elsevier Inc. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Lin</LastName>
<ForeName>Xian-Dan</ForeName>
<Initials>XD</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China; Wenzhou Center for Disease Control and Prevention, Wenzhou, Zhejiang Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Wen</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Hao</LastName>
<ForeName>Zong-Yu</ForeName>
<Initials>ZY</Initials>
<AffiliationInfo><Affiliation>Henan Center for Disease Control and Prevention, Zhengzhou, Henan Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Zhao-Xiao</ForeName>
<Initials>ZX</Initials>
<AffiliationInfo><Affiliation>Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Wen-Ping</ForeName>
<Initials>WP</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guan</LastName>
<ForeName>Xiao-Qing</ForeName>
<Initials>XQ</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Miao-Ruo</ForeName>
<Initials>MR</Initials>
<AffiliationInfo><Affiliation>Longquan Center for Disease Control and Prevention, Longquan, Zhejiang Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Hong-Wei</ForeName>
<Initials>HW</Initials>
<AffiliationInfo><Affiliation>Neixiang Center for Disease Control and Prevention, Neixiang, Henan Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhou</LastName>
<ForeName>Run-Hong</ForeName>
<Initials>RH</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Ming-Hui</ForeName>
<Initials>MH</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tang</LastName>
<ForeName>Guang-Peng</ForeName>
<Initials>GP</Initials>
<AffiliationInfo><Affiliation>Guizhou Center for Disease Control and Prevention, Guiyang, Guizhou Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wu</LastName>
<ForeName>Jun</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Jiyuan Center for Disease Control and Prevention, Jiyuan, Henan Province, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Holmes</LastName>
<ForeName>Edward C</ForeName>
<Initials>EC</Initials>
<AffiliationInfo><Affiliation>Marie Bashir Institute for Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW 2006, Australia.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Yong-Zhen</ForeName>
<Initials>YZ</Initials>
<AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, Department of Zoonoses, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing, China. Electronic address: zhangyongzhen@icdc.cn.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>04</Month>
<Day>03</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Virology</MedlineTA>
<NlmUniqueID>0110674</NlmUniqueID>
<ISSNLinking>0042-6822</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017934" MajorTopicYN="N">Coronavirus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Bats</Keyword>
<Keyword MajorTopicYN="Y">Coronavirus</Keyword>
<Keyword MajorTopicYN="Y">Evolution</Keyword>
<Keyword MajorTopicYN="Y">Phylogeny</Keyword>
<Keyword MajorTopicYN="Y">SARS</Keyword>
<Keyword MajorTopicYN="Y">Transmission</Keyword>
</KeywordList>
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<Month>02</Month>
<Day>12</Day>
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<PubMedPubDate PubStatus="revised"><Year>2017</Year>
<Month>03</Month>
<Day>27</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2017</Year>
<Month>03</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2017</Year>
<Month>4</Month>
<Day>7</Day>
<Hour>6</Hour>
<Minute>0</Minute>
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<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>7</Month>
<Day>18</Day>
<Hour>6</Hour>
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<PubMedPubDate PubStatus="entrez"><Year>2017</Year>
<Month>4</Month>
<Day>7</Day>
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<affiliations><list><country><li>Australie</li>
<li>République populaire de Chine</li>
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<region><li>Nouvelle-Galles du Sud</li>
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<tree><country name="République populaire de Chine"><noRegion><name sortKey="Lin, Xian Dan" sort="Lin, Xian Dan" uniqKey="Lin X" first="Xian-Dan" last="Lin">Xian-Dan Lin</name>
</noRegion>
<name sortKey="Guan, Xiao Qing" sort="Guan, Xiao Qing" uniqKey="Guan X" first="Xiao-Qing" last="Guan">Xiao-Qing Guan</name>
<name sortKey="Guo, Wen Ping" sort="Guo, Wen Ping" uniqKey="Guo W" first="Wen-Ping" last="Guo">Wen-Ping Guo</name>
<name sortKey="Hao, Zong Yu" sort="Hao, Zong Yu" uniqKey="Hao Z" first="Zong-Yu" last="Hao">Zong-Yu Hao</name>
<name sortKey="Li, Ming Hui" sort="Li, Ming Hui" uniqKey="Li M" first="Ming-Hui" last="Li">Ming-Hui Li</name>
<name sortKey="Tang, Guang Peng" sort="Tang, Guang Peng" uniqKey="Tang G" first="Guang-Peng" last="Tang">Guang-Peng Tang</name>
<name sortKey="Wang, Hong Wei" sort="Wang, Hong Wei" uniqKey="Wang H" first="Hong-Wei" last="Wang">Hong-Wei Wang</name>
<name sortKey="Wang, Miao Ruo" sort="Wang, Miao Ruo" uniqKey="Wang M" first="Miao-Ruo" last="Wang">Miao-Ruo Wang</name>
<name sortKey="Wang, Wen" sort="Wang, Wen" uniqKey="Wang W" first="Wen" last="Wang">Wen Wang</name>
<name sortKey="Wang, Zhao Xiao" sort="Wang, Zhao Xiao" uniqKey="Wang Z" first="Zhao-Xiao" last="Wang">Zhao-Xiao Wang</name>
<name sortKey="Wu, Jun" sort="Wu, Jun" uniqKey="Wu J" first="Jun" last="Wu">Jun Wu</name>
<name sortKey="Zhang, Yong Zhen" sort="Zhang, Yong Zhen" uniqKey="Zhang Y" first="Yong-Zhen" last="Zhang">Yong-Zhen Zhang</name>
<name sortKey="Zhou, Run Hong" sort="Zhou, Run Hong" uniqKey="Zhou R" first="Run-Hong" last="Zhou">Run-Hong Zhou</name>
</country>
<country name="Australie"><region name="Nouvelle-Galles du Sud"><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name>
</region>
</country>
</tree>
</affiliations>
</record>

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{{Explor lien
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   |type=    RBID
   |clé=     pubmed:28384506
   |texte=   Extensive diversity of coronaviruses in bats from China.
}}

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Extensive diversity of coronaviruses in bats from China.

Extensive diversity of coronaviruses in bats from China.

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