The Red Fox Y-Chromosome in Comparative Context.
Identifieur interne : 000518 ( PubMed/Curation ); précédent : 000517; suivant : 000519The Red Fox Y-Chromosome in Comparative Context.
Auteurs : Halie M. Rando [États-Unis] ; William H. Wadlington [États-Unis] ; Jennifer L. Johnson [États-Unis] ; Jeremy T. Stutchman [États-Unis] ; Lyudmila N. Trut [Russie] ; Marta Farré [Royaume-Uni] ; Anna V. Kukekova [États-Unis]Source :
- Genes [ 2073-4425 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Carnivora, Chromosome Y, Loups, Renards, Variations de nombre de copies de segment d'ADN.
- Animaux, Chats, Chiens, Femelle, Génome, Mâle, Phylogénie.
English descriptors
- KwdEn :
- MESH :
Abstract
While the number of mammalian genome assemblies has proliferated, Y-chromosome assemblies have lagged behind. This discrepancy is caused by biological features of the Y-chromosome, such as its high repeat content, that present challenges to assembly with short-read, next-generation sequencing technologies. Partial Y-chromosome assemblies have been developed for the cat (Feliscatus), dog (Canislupusfamiliaris), and grey wolf (Canislupuslupus), providing the opportunity to examine the red fox (Vulpesvulpes) Y-chromosome in the context of closely related species. Here we present a data-driven approach to identifying Y-chromosome sequence among the scaffolds that comprise the short-read assembled red fox genome. First, scaffolds containing genes found on the Y-chromosomes of cats, dogs, and wolves were identified. Next, analysis of the resequenced genomes of 15 male and 15 female foxes revealed scaffolds containing male-specific k-mers and patterns of inter-sex copy number variation consistent with the heterogametic chromosome. Analyzing variation across these two metrics revealed 171 scaffolds containing 3.37 Mbp of putative Y-chromosome sequence. The gene content of these scaffolds is consistent overall with that of the Y-chromosome in other carnivore species, though the red fox Y-chromosome carries more copies of BCORY2 and UBE1Y than has been reported in related species and fewer copies of SRY than in other canids. The assignment of these scaffolds to the Y-chromosome serves to further characterize the content of the red fox draft genome while providing resources for future analyses of canid Y-chromosome evolution.
DOI: 10.3390/genes10060409
PubMed: 31142040
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000518
Links to Exploration step
pubmed:31142040Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Red Fox Y-Chromosome in Comparative Context.</title><author><name sortKey="Rando, Halie M" sort="Rando, Halie M" uniqKey="Rando H" first="Halie M" last="Rando">Halie M. Rando</name><affiliation wicri:level="1"><nlm:affiliation>Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. rando2@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Wadlington, William H" sort="Wadlington, William H" uniqKey="Wadlington W" first="William H" last="Wadlington">William H. Wadlington</name><affiliation wicri:level="1"><nlm:affiliation>Tropical Research and Education Center, Agronomy Department, University of Florida, Homestead, FL 33031, USA. wwadlington@ufl.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Tropical Research and Education Center, Agronomy Department, University of Florida, Homestead, FL 33031</wicri:regionArea></affiliation></author><author><name sortKey="Johnson, Jennifer L" sort="Johnson, Jennifer L" uniqKey="Johnson J" first="Jennifer L" last="Johnson">Jennifer L. Johnson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. jjohnso@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Stutchman, Jeremy T" sort="Stutchman, Jeremy T" uniqKey="Stutchman J" first="Jeremy T" last="Stutchman">Jeremy T. Stutchman</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. stutchm2@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Trut, Lyudmila N" sort="Trut, Lyudmila N" uniqKey="Trut L" first="Lyudmila N" last="Trut">Lyudmila N. Trut</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia. trut@bionet.nsc.ru.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk</wicri:regionArea></affiliation></author><author><name sortKey="Farre, Marta" sort="Farre, Marta" uniqKey="Farre M" first="Marta" last="Farré">Marta Farré</name><affiliation wicri:level="1"><nlm:affiliation>School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK. m.farre-belmonte@kent.ac.uk.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ</wicri:regionArea></affiliation></author><author><name sortKey="Kukekova, Anna V" sort="Kukekova, Anna V" uniqKey="Kukekova A" first="Anna V" last="Kukekova">Anna V. Kukekova</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. avk@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31142040</idno><idno type="pmid">31142040</idno><idno type="doi">10.3390/genes10060409</idno><idno type="wicri:Area/PubMed/Corpus">000518</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000518</idno><idno type="wicri:Area/PubMed/Curation">000518</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000518</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The Red Fox Y-Chromosome in Comparative Context.</title><author><name sortKey="Rando, Halie M" sort="Rando, Halie M" uniqKey="Rando H" first="Halie M" last="Rando">Halie M. Rando</name><affiliation wicri:level="1"><nlm:affiliation>Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. rando2@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Wadlington, William H" sort="Wadlington, William H" uniqKey="Wadlington W" first="William H" last="Wadlington">William H. Wadlington</name><affiliation wicri:level="1"><nlm:affiliation>Tropical Research and Education Center, Agronomy Department, University of Florida, Homestead, FL 33031, USA. wwadlington@ufl.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Tropical Research and Education Center, Agronomy Department, University of Florida, Homestead, FL 33031</wicri:regionArea></affiliation></author><author><name sortKey="Johnson, Jennifer L" sort="Johnson, Jennifer L" uniqKey="Johnson J" first="Jennifer L" last="Johnson">Jennifer L. Johnson</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. jjohnso@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Stutchman, Jeremy T" sort="Stutchman, Jeremy T" uniqKey="Stutchman J" first="Jeremy T" last="Stutchman">Jeremy T. Stutchman</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. stutchm2@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author><author><name sortKey="Trut, Lyudmila N" sort="Trut, Lyudmila N" uniqKey="Trut L" first="Lyudmila N" last="Trut">Lyudmila N. Trut</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia. trut@bionet.nsc.ru.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk</wicri:regionArea></affiliation></author><author><name sortKey="Farre, Marta" sort="Farre, Marta" uniqKey="Farre M" first="Marta" last="Farré">Marta Farré</name><affiliation wicri:level="1"><nlm:affiliation>School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK. m.farre-belmonte@kent.ac.uk.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ</wicri:regionArea></affiliation></author><author><name sortKey="Kukekova, Anna V" sort="Kukekova, Anna V" uniqKey="Kukekova A" first="Anna V" last="Kukekova">Anna V. Kukekova</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. avk@illinois.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801</wicri:regionArea></affiliation></author></analytic><series><title level="j">Genes</title><idno type="ISSN">2073-4425</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Carnivora (genetics)</term><term>Cats</term><term>DNA Copy Number Variations (genetics)</term><term>Dogs</term><term>Female</term><term>Foxes (genetics)</term><term>Genome</term><term>Male</term><term>Phylogeny</term><term>Wolves (genetics)</term><term>Y Chromosome (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Carnivora (génétique)</term><term>Chats</term><term>Chiens</term><term>Chromosome Y (génétique)</term><term>Femelle</term><term>Génome</term><term>Loups (génétique)</term><term>Mâle</term><term>Phylogénie</term><term>Renards (génétique)</term><term>Variations de nombre de copies de segment d'ADN (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Carnivora</term><term>DNA Copy Number Variations</term><term>Foxes</term><term>Wolves</term><term>Y Chromosome</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Carnivora</term><term>Chromosome Y</term><term>Loups</term><term>Renards</term><term>Variations de nombre de copies de segment d'ADN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Cats</term><term>Dogs</term><term>Female</term><term>Genome</term><term>Male</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Chats</term><term>Chiens</term><term>Femelle</term><term>Génome</term><term>Mâle</term><term>Phylogénie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">While the number of mammalian genome assemblies has proliferated, Y-chromosome assemblies have lagged behind. This discrepancy is caused by biological features of the Y-chromosome, such as its high repeat content, that present challenges to assembly with short-read, next-generation sequencing technologies. Partial Y-chromosome assemblies have been developed for the cat (<i>Felis</i><i>catus</i>), dog (<i>Canis</i><i>lupus</i><i>familiaris</i>), and grey wolf (<i>Canis</i><i>lupus</i><i>lupus</i>), providing the opportunity to examine the red fox (<i>Vulpes</i><i>vulpes</i>) Y-chromosome in the context of closely related species. Here we present a data-driven approach to identifying Y-chromosome sequence among the scaffolds that comprise the short-read assembled red fox genome. First, scaffolds containing genes found on the Y-chromosomes of cats, dogs, and wolves were identified. Next, analysis of the resequenced genomes of 15 male and 15 female foxes revealed scaffolds containing male-specific <i>k</i>-mers and patterns of inter-sex copy number variation consistent with the heterogametic chromosome. Analyzing variation across these two metrics revealed 171 scaffolds containing 3.37 Mbp of putative Y-chromosome sequence. The gene content of these scaffolds is consistent overall with that of the Y-chromosome in other carnivore species, though the red fox Y-chromosome carries more copies of <i>BCORY2</i> and <i>UBE1Y</i> than has been reported in related species and fewer copies of <i>SRY</i> than in other canids. The assignment of these scaffolds to the Y-chromosome serves to further characterize the content of the red fox draft genome while providing resources for future analyses of canid Y-chromosome evolution.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31142040</PMID><DateCompleted><Year>2019</Year><Month>12</Month><Day>26</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Print">2073-4425</ISSN><JournalIssue CitedMedium="Print"><Volume>10</Volume><Issue>6</Issue><PubDate><Year>2019</Year><Month>05</Month><Day>28</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>The Red Fox Y-Chromosome in Comparative Context.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E409</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes10060409</ELocationID><Abstract><AbstractText>While the number of mammalian genome assemblies has proliferated, Y-chromosome assemblies have lagged behind. This discrepancy is caused by biological features of the Y-chromosome, such as its high repeat content, that present challenges to assembly with short-read, next-generation sequencing technologies. Partial Y-chromosome assemblies have been developed for the cat (<i>Felis</i><i>catus</i>), dog (<i>Canis</i><i>lupus</i><i>familiaris</i>), and grey wolf (<i>Canis</i><i>lupus</i><i>lupus</i>), providing the opportunity to examine the red fox (<i>Vulpes</i><i>vulpes</i>) Y-chromosome in the context of closely related species. Here we present a data-driven approach to identifying Y-chromosome sequence among the scaffolds that comprise the short-read assembled red fox genome. First, scaffolds containing genes found on the Y-chromosomes of cats, dogs, and wolves were identified. Next, analysis of the resequenced genomes of 15 male and 15 female foxes revealed scaffolds containing male-specific <i>k</i>-mers and patterns of inter-sex copy number variation consistent with the heterogametic chromosome. Analyzing variation across these two metrics revealed 171 scaffolds containing 3.37 Mbp of putative Y-chromosome sequence. The gene content of these scaffolds is consistent overall with that of the Y-chromosome in other carnivore species, though the red fox Y-chromosome carries more copies of <i>BCORY2</i> and <i>UBE1Y</i> than has been reported in related species and fewer copies of <i>SRY</i> than in other canids. The assignment of these scaffolds to the Y-chromosome serves to further characterize the content of the red fox draft genome while providing resources for future analyses of canid Y-chromosome evolution.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rando</LastName><ForeName>Halie M</ForeName><Initials>HM</Initials><AffiliationInfo><Affiliation>Illinois Informatics Institute, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. rando2@illinois.edu.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. rando2@illinois.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wadlington</LastName><ForeName>William H</ForeName><Initials>WH</Initials><AffiliationInfo><Affiliation>Tropical Research and Education Center, Agronomy Department, University of Florida, Homestead, FL 33031, USA. wwadlington@ufl.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Johnson</LastName><ForeName>Jennifer L</ForeName><Initials>JL</Initials><AffiliationInfo><Affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. jjohnso@illinois.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Stutchman</LastName><ForeName>Jeremy T</ForeName><Initials>JT</Initials><AffiliationInfo><Affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. stutchm2@illinois.edu.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trut</LastName><ForeName>Lyudmila N</ForeName><Initials>LN</Initials><AffiliationInfo><Affiliation>Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia. trut@bionet.nsc.ru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Farré</LastName><ForeName>Marta</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK. m.farre-belmonte@kent.ac.uk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kukekova</LastName><ForeName>Anna V</ForeName><Initials>AV</Initials><AffiliationInfo><Affiliation>Department of Animal Sciences, College of Agricultural, Consumer and Environmental Sciences, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. avk@illinois.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>R01 GM120782</GrantID><Acronym>NH</Acronym><Agency>NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>05</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002335" MajorTopicYN="N">Carnivora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002415" MajorTopicYN="N">Cats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D056915" MajorTopicYN="N">DNA Copy Number Variations</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004285" MajorTopicYN="N">Dogs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005589" MajorTopicYN="N">Foxes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="Y">Genome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019596" MajorTopicYN="N">Wolves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014998" MajorTopicYN="N">Y Chromosome</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">BCORY2</Keyword><Keyword MajorTopicYN="Y">MSY</Keyword><Keyword MajorTopicYN="Y">UBE1Y</Keyword><Keyword MajorTopicYN="Y">Vulpes vulpes</Keyword><Keyword MajorTopicYN="Y">Y-chromosome</Keyword><Keyword MajorTopicYN="Y">Y-chromosome genes</Keyword><Keyword MajorTopicYN="Y">carnivore</Keyword><Keyword MajorTopicYN="Y">copy-number variation</Keyword><Keyword MajorTopicYN="Y">next-generation sequencing</Keyword><Keyword MajorTopicYN="Y">sex chromosomes</Keyword></KeywordList><CoiStatement>The authors declare no conflict of interest.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>04</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>05</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>05</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>5</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>5</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>5</Month><Day>31</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31142040</ArticleId><ArticleId IdType="pii">genes10060409</ArticleId><ArticleId IdType="doi">10.3390/genes10060409</ArticleId><ArticleId IdType="pmc">PMC6627929</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>BMC Bioinformatics. 2009 Mar 06;10:80</Citation><ArticleIdList><ArticleId IdType="pubmed">19267900</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Science. 2008 Oct 10;322(5899):225-30</Citation><ArticleIdList><ArticleId IdType="pubmed">18845749</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Ecol Evol. 2018 Sep;2(9):1479-1491</Citation><ArticleIdList><ArticleId IdType="pubmed">30082739</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2005 Dec 15;21(24):4320-1</Citation><ArticleIdList><ArticleId IdType="pubmed">16332717</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Pharmacogenomics. 2012 Jun;13(8):901-15</Citation><ArticleIdList><ArticleId IdType="pubmed">22676195</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>J Hered. 2017 Sep 1;108(6):678-685</Citation><ArticleIdList><ArticleId IdType="pubmed">28821189</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Mol Ecol. 2014 Oct;23(19):4813-30</Citation><ArticleIdList><ArticleId IdType="pubmed">25212210</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33</Citation><ArticleIdList><ArticleId IdType="pubmed">25431634</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Cell. 2014 May 8;157(4):785-94</Citation><ArticleIdList><ArticleId IdType="pubmed">24813606</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2017 May;27(5):768-777</Citation><ArticleIdList><ArticleId IdType="pubmed">28232478</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Commun. 2018 Jul 27;9(1):2945</Citation><ArticleIdList><ArticleId IdType="pubmed">30054462</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2009 Jul 15;25(14):1754-60</Citation><ArticleIdList><ArticleId IdType="pubmed">19451168</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Curr Biol. 2013 Nov 18;23(22):2262-2267</Citation><ArticleIdList><ArticleId IdType="pubmed">24184098</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2013 Sep;23(9):1486-95</Citation><ArticleIdList><ArticleId IdType="pubmed">23788650</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>PLoS One. 2011;6(7):e21374</Citation><ArticleIdList><ArticleId IdType="pubmed">21799735</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genes (Basel). 2018 Jun 20;9(6):</Citation><ArticleIdList><ArticleId IdType="pubmed">29925783</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Genet. 2014 Mar;46(3):253-60</Citation><ArticleIdList><ArticleId IdType="pubmed">24487278</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>J Hered. 2009 Nov-Dec;100(6):659-74</Citation><ArticleIdList><ArticleId IdType="pubmed">19892720</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2003 Jun 19;423(6942):825-37</Citation><ArticleIdList><ArticleId IdType="pubmed">12815422</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Biol Evol. 2015 May 27;7(7):2010-22</Citation><ArticleIdList><ArticleId IdType="pubmed">26019166</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2005 Dec 8;438(7069):803-19</Citation><ArticleIdList><ArticleId IdType="pubmed">16341006</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2016 Apr;26(4):530-40</Citation><ArticleIdList><ArticleId IdType="pubmed">26934921</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9929-34</Citation><ArticleIdList><ArticleId IdType="pubmed">16785431</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>BMC Genomics. 2013 Apr 23;14:273</Citation><ArticleIdList><ArticleId IdType="pubmed">23617698</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Mamm Genome. 2000 Feb;11(2):164-8</Citation><ArticleIdList><ArticleId IdType="pubmed">10656933</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>BMC Biol. 2012 Feb 27;10:12</Citation><ArticleIdList><ArticleId IdType="pubmed">22369503</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Integr Zool. 2019 May;14(3):224-234</Citation><ArticleIdList><ArticleId IdType="pubmed">30019860</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Mol Ecol. 2019 May;28(9):2173-2191</Citation><ArticleIdList><ArticleId IdType="pubmed">30788868</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Methods. 2012 Mar 04;9(4):357-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22388286</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2018 Sep 1;34(17):i748-i756</Citation><ArticleIdList><ArticleId IdType="pubmed">30423094</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>PLoS Genet. 2006 Mar;2(3):e43</Citation><ArticleIdList><ArticleId IdType="pubmed">16596168</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2013 Nov;23(11):1894-907</Citation><ArticleIdList><ArticleId IdType="pubmed">23921660</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Mol Ecol. 2015 Mar;24(6):1205-17</Citation><ArticleIdList><ArticleId IdType="pubmed">25490862</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Methods. 2011 Jan;8(1):61-5</Citation><ArticleIdList><ArticleId IdType="pubmed">21102452</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2014 Apr 24;508(7497):488-93</Citation><ArticleIdList><ArticleId IdType="pubmed">24759410</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genomics. 2009 Apr;93(4):299-304</Citation><ArticleIdList><ArticleId IdType="pubmed">18951970</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>J Mol Biol. 1997 Apr 25;268(1):78-94</Citation><ArticleIdList><ArticleId IdType="pubmed">9149143</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9321-6</Citation><ArticleIdList><ArticleId IdType="pubmed">15197257</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>PLoS One. 2011;6(6):e20642</Citation><ArticleIdList><ArticleId IdType="pubmed">21701575</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioessays. 2009 Mar;31(3):349-60</Citation><ArticleIdList><ArticleId IdType="pubmed">19260016</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2018 Dec;28(12):1841-1851</Citation><ArticleIdList><ArticleId IdType="pubmed">30381290</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Biotechnol. 2011 Nov 08;29(11):987-91</Citation><ArticleIdList><ArticleId IdType="pubmed">22068540</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2009 Aug 15;25(16):2078-9</Citation><ArticleIdList><ArticleId IdType="pubmed">19505943</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>PLoS One. 2013;8(4):e60015</Citation><ArticleIdList><ArticleId IdType="pubmed">23573227</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Trends Genet. 1993 Jun;9(6):218-24</Citation><ArticleIdList><ArticleId IdType="pubmed">8337763</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2009 Jun;19(6):1117-23</Citation><ArticleIdList><ArticleId IdType="pubmed">19251739</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>BMC Genomics. 2017 Jun 29;18(1):495</Citation><ArticleIdList><ArticleId IdType="pubmed">28662691</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Genet. 2017 Apr;49(4):643-650</Citation><ArticleIdList><ArticleId IdType="pubmed">28263316</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Bioinformatics. 2010 Mar 15;26(6):841-2</Citation><ArticleIdList><ArticleId IdType="pubmed">20110278</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nature. 2010 Jan 28;463(7280):536-9</Citation><ArticleIdList><ArticleId IdType="pubmed">20072128</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genetics. 2016 May;203(1):485-92</Citation><ArticleIdList><ArticleId IdType="pubmed">27010023</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genome Res. 2007 Apr;17(4):413-21</Citation><ArticleIdList><ArticleId IdType="pubmed">17322288</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Nat Commun. 2015 Jun 04;6:7330</Citation><ArticleIdList><ArticleId IdType="pubmed">26040272</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>BMC Bioinformatics. 2009 Dec 15;10:421</Citation><ArticleIdList><ArticleId IdType="pubmed">20003500</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Genomics. 2008 Nov;92(5):329-38</Citation><ArticleIdList><ArticleId IdType="pubmed">18674610</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Cytogenet Genome Res. 2015;147(2-3):81-94</Citation><ArticleIdList><ArticleId IdType="pubmed">26730606</ArticleId></ArticleIdList></Reference></ReferenceList><ReferenceList><Reference><Citation>Ecol Evol. 2016 Jun 16;6(14):4775-91</Citation><ArticleIdList><ArticleId IdType="pubmed">27547312</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/PubMed/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000518 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd -nk 000518 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= MersV1
|flux= PubMed
|étape= Curation
|type= RBID
|clé= pubmed:31142040
|texte= The Red Fox Y-Chromosome in Comparative Context.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Curation/RBID.i -Sk "pubmed:31142040" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd \
| NlmPubMed2Wicri -a MersV1
| This area was generated with Dilib version V0.6.33. |  |