Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Identifieur interne : 000F00 ( Main/Exploration ); précédent : 000E99; suivant : 000F01Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Auteurs : N. K. Devanga Ragupathi ; D. P. Muthuirulandi Sethuvel ; F. Y. Inbanathan ; B. VeeraraghavanSource :
- New Microbes and New Infections [ 2052-2975 ] ; 2017.
Abstract
Url:
DOI: 10.1016/j.nmni.2017.09.003
PubMed: 29204286
PubMed Central: 5711669
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Accurate differentiation of <italic>Escherichia coli</italic> and <italic>Shigella</italic> serogroups: challenges and strategies</title><author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name></author><author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name></author><author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name></author><author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">29204286</idno><idno type="pmc">5711669</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711669</idno><idno type="RBID">PMC:5711669</idno><idno type="doi">10.1016/j.nmni.2017.09.003</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">001391</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001391</idno><idno type="wicri:Area/Pmc/Curation">001391</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001391</idno><idno type="wicri:Area/Pmc/Checkpoint">000934</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000934</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:29204286</idno><idno type="wicri:Area/PubMed/Corpus">000A60</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000A60</idno><idno type="wicri:Area/PubMed/Curation">000A60</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000A60</idno><idno type="wicri:Area/PubMed/Checkpoint">000A26</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000A26</idno><idno type="wicri:Area/Ncbi/Merge">001C73</idno><idno type="wicri:Area/Ncbi/Curation">001C73</idno><idno type="wicri:Area/Ncbi/Checkpoint">001C73</idno><idno type="wicri:Area/Main/Merge">000F03</idno><idno type="wicri:Area/Main/Curation">000F00</idno><idno type="wicri:Area/Main/Exploration">000F00</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Accurate differentiation of <italic>Escherichia coli</italic> and <italic>Shigella</italic> serogroups: challenges and strategies</title><author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name></author><author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name></author><author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name></author><author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name></author></analytic><series><title level="j">New Microbes and New Infections</title><idno type="eISSN">2052-2975</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Shigella</italic> spp. and <italic>Escherichia coli</italic> are closely related; both belong to the family <italic>Enterobacteriaceae.</italic> Phenotypically, <italic>Shigella</italic> spp. and <italic>E. coli</italic> share many common characteristics, yet they have separate entities in epidemiology and clinical disease, which poses a diagnostic challenge. We collated information for the best possible approach to differentiate clinically relevant <italic>E. coli</italic> from <italic>Shigella</italic> spp. We found that a molecular approach is required for confirmation. High discriminatory potential is seen with whole genome sequencing analysed for k-mers and single nucleotide polymorphism. Among these, identification using single nucleotide polymorphism is easy to perform and analyse, and it thus appears more promising. Among the nonmolecular methods, matrix-assisted desorption ionization–time of flight mass spectrometry may be applicable when data analysis is assisted with advanced analytic tools.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Brenner, D J" uniqKey="Brenner D">D.J. Brenner</name></author><author><name sortKey="Fanning, G R" uniqKey="Fanning G">G.R. Fanning</name></author><author><name sortKey="Steigerwalt, A G" uniqKey="Steigerwalt A">A.G. Steigerwalt</name></author><author><name sortKey="Orskov, I" uniqKey="Orskov I">I. Orskov</name></author><author><name sortKey="Orskov, F" uniqKey="Orskov F">F. 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Muthuirulandi Sethuvel</name><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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