Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Identifieur interne : 000F00 ( Main/Exploration ); précédent : 000E99; suivant : 000F01Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Auteurs : N. K. Devanga Ragupathi ; D. P. Muthuirulandi Sethuvel ; F. Y. Inbanathan ; B. VeeraraghavanSource :
- New Microbes and New Infections [ 2052-2975 ] ; 2017.
Abstract
Url:
DOI: 10.1016/j.nmni.2017.09.003
PubMed: 29204286
PubMed Central: 5711669
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 001391
- to stream Pmc, to step Curation: 001391
- to stream Pmc, to step Checkpoint: 000934
- to stream PubMed, to step Corpus: 000A60
- to stream PubMed, to step Curation: 000A60
- to stream PubMed, to step Checkpoint: 000A26
- to stream Ncbi, to step Merge: 001C73
- to stream Ncbi, to step Curation: 001C73
- to stream Ncbi, to step Checkpoint: 001C73
- to stream Main, to step Merge: 000F03
- to stream Main, to step Curation: 000F00
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Accurate differentiation of <italic>Escherichia coli</italic>
and <italic>Shigella</italic>
serogroups: challenges and strategies</title>
<author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name>
</author>
<author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name>
</author>
<author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name>
</author>
<author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">29204286</idno>
<idno type="pmc">5711669</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711669</idno>
<idno type="RBID">PMC:5711669</idno>
<idno type="doi">10.1016/j.nmni.2017.09.003</idno>
<date when="2017">2017</date>
<idno type="wicri:Area/Pmc/Corpus">001391</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001391</idno>
<idno type="wicri:Area/Pmc/Curation">001391</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001391</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000934</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000934</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:29204286</idno>
<idno type="wicri:Area/PubMed/Corpus">000A60</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000A60</idno>
<idno type="wicri:Area/PubMed/Curation">000A60</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000A60</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000A26</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000A26</idno>
<idno type="wicri:Area/Ncbi/Merge">001C73</idno>
<idno type="wicri:Area/Ncbi/Curation">001C73</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">001C73</idno>
<idno type="wicri:Area/Main/Merge">000F03</idno>
<idno type="wicri:Area/Main/Curation">000F00</idno>
<idno type="wicri:Area/Main/Exploration">000F00</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Accurate differentiation of <italic>Escherichia coli</italic>
and <italic>Shigella</italic>
serogroups: challenges and strategies</title>
<author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name>
</author>
<author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name>
</author>
<author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name>
</author>
<author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name>
</author>
</analytic>
<series><title level="j">New Microbes and New Infections</title>
<idno type="eISSN">2052-2975</idno>
<imprint><date when="2017">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p><italic>Shigella</italic>
spp. and <italic>Escherichia coli</italic>
are closely related; both belong to the family <italic>Enterobacteriaceae.</italic>
Phenotypically, <italic>Shigella</italic>
spp. and <italic>E. coli</italic>
share many common characteristics, yet they have separate entities in epidemiology and clinical disease, which poses a diagnostic challenge. We collated information for the best possible approach to differentiate clinically relevant <italic>E. coli</italic>
from <italic>Shigella</italic>
spp. We found that a molecular approach is required for confirmation. High discriminatory potential is seen with whole genome sequencing analysed for k-mers and single nucleotide polymorphism. Among these, identification using single nucleotide polymorphism is easy to perform and analyse, and it thus appears more promising. Among the nonmolecular methods, matrix-assisted desorption ionization–time of flight mass spectrometry may be applicable when data analysis is assisted with advanced analytic tools.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Brenner, D J" uniqKey="Brenner D">D.J. Brenner</name>
</author>
<author><name sortKey="Fanning, G R" uniqKey="Fanning G">G.R. Fanning</name>
</author>
<author><name sortKey="Steigerwalt, A G" uniqKey="Steigerwalt A">A.G. Steigerwalt</name>
</author>
<author><name sortKey="Orskov, I" uniqKey="Orskov I">I. Orskov</name>
</author>
<author><name sortKey="Orskov, F" uniqKey="Orskov F">F. Orskov</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Van Den Beld, M J" uniqKey="Van Den Beld M">M.J. Van den Beld</name>
</author>
<author><name sortKey="Reubsaet, F A" uniqKey="Reubsaet F">F.A. Reubsaet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Connor, T R" uniqKey="Connor T">T.R. Connor</name>
</author>
<author><name sortKey="Barker, C R" uniqKey="Barker C">C.R. Barker</name>
</author>
<author><name sortKey="Baker, K S" uniqKey="Baker K">K.S. Baker</name>
</author>
<author><name sortKey="Weill, F X" uniqKey="Weill F">F.X. Weill</name>
</author>
<author><name sortKey="Talukder, K A" uniqKey="Talukder K">K.A. Talukder</name>
</author>
<author><name sortKey="Smith, A M" uniqKey="Smith A">A.M. Smith</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Khot, P D" uniqKey="Khot P">P.D. Khot</name>
</author>
<author><name sortKey="Fisher, M A" uniqKey="Fisher M">M.A. Fisher</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shakya, G" uniqKey="Shakya G">G. Shakya</name>
</author>
<author><name sortKey="Acharya, J" uniqKey="Acharya J">J. Acharya</name>
</author>
<author><name sortKey="Adhikari, S" uniqKey="Adhikari S">S. Adhikari</name>
</author>
<author><name sortKey="Rijal, N" uniqKey="Rijal N">N. Rijal</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pupo, G M" uniqKey="Pupo G">G.M. Pupo</name>
</author>
<author><name sortKey="Lan, R" uniqKey="Lan R">R. Lan</name>
</author>
<author><name sortKey="Reeves, P R" uniqKey="Reeves P">P.R. Reeves</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Escobar Paramo, P" uniqKey="Escobar Paramo P">P. Escobar-Paramo</name>
</author>
<author><name sortKey="Giudicelli, C" uniqKey="Giudicelli C">C. Giudicelli</name>
</author>
<author><name sortKey="Parsot, C" uniqKey="Parsot C">C. Parsot</name>
</author>
<author><name sortKey="Denamur, E" uniqKey="Denamur E">E. Denamur</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Johnson, J R" uniqKey="Johnson J">J.R. Johnson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lukjancenko, O" uniqKey="Lukjancenko O">O. Lukjancenko</name>
</author>
<author><name sortKey="Wassenaar, T M" uniqKey="Wassenaar T">T.M. Wassenaar</name>
</author>
<author><name sortKey="Ussery, D W" uniqKey="Ussery D">D.W. Ussery</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pavlovic, M" uniqKey="Pavlovic M">M. Pavlovic</name>
</author>
<author><name sortKey="Luze, A" uniqKey="Luze A">A. Luze</name>
</author>
<author><name sortKey="Konrad, R" uniqKey="Konrad R">R. Konrad</name>
</author>
<author><name sortKey="Berger, A" uniqKey="Berger A">A. Berger</name>
</author>
<author><name sortKey="Sing, A" uniqKey="Sing A">A. Sing</name>
</author>
<author><name sortKey="Busch, U" uniqKey="Busch U">U. Busch</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lobersli, I" uniqKey="Lobersli I">I. Lobersli</name>
</author>
<author><name sortKey="Wester, A L" uniqKey="Wester A">A.L. Wester</name>
</author>
<author><name sortKey="Kristiansen, A" uniqKey="Kristiansen A">A. Kristiansen</name>
</author>
<author><name sortKey="Brandal, L T" uniqKey="Brandal L">L.T. Brandal</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Edwards, K J" uniqKey="Edwards K">K.J. Edwards</name>
</author>
<author><name sortKey="Logan, J M J" uniqKey="Logan J">J.M.J. Logan</name>
</author>
<author><name sortKey="Langham, S" uniqKey="Langham S">S. Langham</name>
</author>
<author><name sortKey="Swift, C" uniqKey="Swift C">C. Swift</name>
</author>
<author><name sortKey="Gharbia, S E" uniqKey="Gharbia S">S.E. Gharbia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chen, L" uniqKey="Chen L">L. Chen</name>
</author>
<author><name sortKey="Cai, Y" uniqKey="Cai Y">Y. Cai</name>
</author>
<author><name sortKey="Zhou, G" uniqKey="Zhou G">G. Zhou</name>
</author>
<author><name sortKey="Shi, X" uniqKey="Shi X">X. Shi</name>
</author>
<author><name sortKey="Su, J" uniqKey="Su J">J. Su</name>
</author>
<author><name sortKey="Chen, G" uniqKey="Chen G">G. Chen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jenkins, C" uniqKey="Jenkins C">C. Jenkins</name>
</author>
<author><name sortKey="Ling, C L" uniqKey="Ling C">C.L. Ling</name>
</author>
<author><name sortKey="Ciesielczuk, H L" uniqKey="Ciesielczuk H">H.L. Ciesielczuk</name>
</author>
<author><name sortKey="Lockwood, J" uniqKey="Lockwood J">J. Lockwood</name>
</author>
<author><name sortKey="Hopkins, S" uniqKey="Hopkins S">S. Hopkins</name>
</author>
<author><name sortKey="Mchugh, T D" uniqKey="Mchugh T">T.D. McHugh</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Li, S" uniqKey="Li S">S. Li</name>
</author>
<author><name sortKey="Sun, Q" uniqKey="Sun Q">Q. Sun</name>
</author>
<author><name sortKey="Wei, X" uniqKey="Wei X">X. Wei</name>
</author>
<author><name sortKey="Klena, J D" uniqKey="Klena J">J.D. Klena</name>
</author>
<author><name sortKey="Wang, J" uniqKey="Wang J">J. Wang</name>
</author>
<author><name sortKey="Liu, Y" uniqKey="Liu Y">Y. Liu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Francisco, A P" uniqKey="Francisco A">A.P. Francisco</name>
</author>
<author><name sortKey="Bugalho, M" uniqKey="Bugalho M">M. Bugalho</name>
</author>
<author><name sortKey="Ramirez, M" uniqKey="Ramirez M">M. Ramirez</name>
</author>
<author><name sortKey="Carrico, J A" uniqKey="Carrico J">J.A. Carriço</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gibreel, T M" uniqKey="Gibreel T">T.M. Gibreel</name>
</author>
<author><name sortKey="Dodgson, A R" uniqKey="Dodgson A">A.R. Dodgson</name>
</author>
<author><name sortKey="Cheesbrough, J" uniqKey="Cheesbrough J">J. Cheesbrough</name>
</author>
<author><name sortKey="Fox, A J" uniqKey="Fox A">A.J. Fox</name>
</author>
<author><name sortKey="Bolton, F J" uniqKey="Bolton F">F.J. Bolton</name>
</author>
<author><name sortKey="Upton, M" uniqKey="Upton M">M. Upton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Otero, V" uniqKey="Otero V">V. Otero</name>
</author>
<author><name sortKey="Rodriguez Calleja, J M" uniqKey="Rodriguez Calleja J">J.M. Rodriguez-Calleja</name>
</author>
<author><name sortKey="Otero, A" uniqKey="Otero A">A. Otero</name>
</author>
<author><name sortKey="Garcia Lopez, M L" uniqKey="Garcia Lopez M">M.L. Garcia-Lopez</name>
</author>
<author><name sortKey="Santos, J A" uniqKey="Santos J">J.A. Santos</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shahsavan, S" uniqKey="Shahsavan S">S. Shahsavan</name>
</author>
<author><name sortKey="Nobakht, M" uniqKey="Nobakht M">M. Nobakht</name>
</author>
<author><name sortKey="Rastegar Lari, A" uniqKey="Rastegar Lari A">A. Rastegar-Lari</name>
</author>
<author><name sortKey="Owlia, P" uniqKey="Owlia P">P. Owlia</name>
</author>
<author><name sortKey="Bakhshi, B" uniqKey="Bakhshi B">B. Bakhshi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vos, M" uniqKey="Vos M">M. Vos</name>
</author>
<author><name sortKey="Quince, C" uniqKey="Quince C">C. Quince</name>
</author>
<author><name sortKey="Pijl, A S" uniqKey="Pijl A">A.S. Pijl</name>
</author>
<author><name sortKey="De Hollander, M" uniqKey="De Hollander M">M. de Hollander</name>
</author>
<author><name sortKey="Kowalchuk, G A" uniqKey="Kowalchuk G">G.A. Kowalchuk</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Brown, E W" uniqKey="Brown E">E.W. Brown</name>
</author>
<author><name sortKey="Mammel, M K" uniqKey="Mammel M">M.K. Mammel</name>
</author>
<author><name sortKey="Leclerc, J E" uniqKey="Leclerc J">J.E. LeClerc</name>
</author>
<author><name sortKey="Cebula, T A" uniqKey="Cebula T">T.A. Cebula</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chattaway, M A" uniqKey="Chattaway M">M.A. Chattaway</name>
</author>
<author><name sortKey="Schaefer, U" uniqKey="Schaefer U">U. Schaefer</name>
</author>
<author><name sortKey="Tewolde, R" uniqKey="Tewolde R">R. Tewolde</name>
</author>
<author><name sortKey="Dallman, T J" uniqKey="Dallman T">T.J. Dallman</name>
</author>
<author><name sortKey="Jenkins, C" uniqKey="Jenkins C">C. Jenkins</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hasman, H" uniqKey="Hasman H">H. Hasman</name>
</author>
<author><name sortKey="Saputra, D" uniqKey="Saputra D">D. Saputra</name>
</author>
<author><name sortKey="Sicheritz Ponten, T" uniqKey="Sicheritz Ponten T">T. Sicheritz-Ponten</name>
</author>
<author><name sortKey="Lund, O" uniqKey="Lund O">O. Lund</name>
</author>
<author><name sortKey="Svendsen, C A" uniqKey="Svendsen C">C.A. Svendsen</name>
</author>
<author><name sortKey="Frimodt Moller, N" uniqKey="Frimodt Moller N">N. Frimodt-Moller</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Larsen, M V" uniqKey="Larsen M">M.V. Larsen</name>
</author>
<author><name sortKey="Cosentino, S" uniqKey="Cosentino S">S. Cosentino</name>
</author>
<author><name sortKey="Lukjancenko, O" uniqKey="Lukjancenko O">O. Lukjancenko</name>
</author>
<author><name sortKey="Saputra, D" uniqKey="Saputra D">D. Saputra</name>
</author>
<author><name sortKey="Rasmussen, S" uniqKey="Rasmussen S">S. Rasmussen</name>
</author>
<author><name sortKey="Hasman, H" uniqKey="Hasman H">H. Hasman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pettengill, E A" uniqKey="Pettengill E">E.A. Pettengill</name>
</author>
<author><name sortKey="Pettengill, J B" uniqKey="Pettengill J">J.B. Pettengill</name>
</author>
<author><name sortKey="Binet, R" uniqKey="Binet R">R. Binet</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ashton, P M" uniqKey="Ashton P">P.M. Ashton</name>
</author>
<author><name sortKey="Baker, K S" uniqKey="Baker K">K.S. Baker</name>
</author>
<author><name sortKey="Gentle, A" uniqKey="Gentle A">A. Gentle</name>
</author>
<author><name sortKey="Wooldridge, D J" uniqKey="Wooldridge D">D.J. Wooldridge</name>
</author>
<author><name sortKey="Thomson, N R" uniqKey="Thomson N">N.R. Thomson</name>
</author>
<author><name sortKey="Dallman, T J" uniqKey="Dallman T">T.J. Dallman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dekker, J" uniqKey="Dekker J">J. Dekker</name>
</author>
<author><name sortKey="Frank, K" uniqKey="Frank K">K. Frank</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list></list>
<tree><noCountry><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name>
<name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name>
<name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name>
<name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name>
</noCountry>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000F00 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000F00 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= MersV1 |flux= Main |étape= Exploration |type= RBID |clé= PMC:5711669 |texte= Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29204286" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a MersV1
![]() | This area was generated with Dilib version V0.6.33. | ![]() |