Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Identifieur interne : 001391 ( Pmc/Curation ); précédent : 001390; suivant : 001392Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies
Auteurs : N. K. Devanga Ragupathi ; D. P. Muthuirulandi Sethuvel ; F. Y. Inbanathan ; B. VeeraraghavanSource :
- New Microbes and New Infections [ 2052-2975 ] ; 2017.
Abstract
Url:
DOI: 10.1016/j.nmni.2017.09.003
PubMed: 29204286
PubMed Central: 5711669
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Accurate differentiation of <italic>Escherichia coli</italic>
and <italic>Shigella</italic>
serogroups: challenges and strategies</title>
<author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name>
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<author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name>
</author>
<author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name>
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<author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Accurate differentiation of <italic>Escherichia coli</italic>
and <italic>Shigella</italic>
serogroups: challenges and strategies</title>
<author><name sortKey="Devanga Ragupathi, N K" sort="Devanga Ragupathi, N K" uniqKey="Devanga Ragupathi N" first="N. K." last="Devanga Ragupathi">N. K. Devanga Ragupathi</name>
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<author><name sortKey="Muthuirulandi Sethuvel, D P" sort="Muthuirulandi Sethuvel, D P" uniqKey="Muthuirulandi Sethuvel D" first="D. P." last="Muthuirulandi Sethuvel">D. P. Muthuirulandi Sethuvel</name>
</author>
<author><name sortKey="Inbanathan, F Y" sort="Inbanathan, F Y" uniqKey="Inbanathan F" first="F. Y." last="Inbanathan">F. Y. Inbanathan</name>
</author>
<author><name sortKey="Veeraraghavan, B" sort="Veeraraghavan, B" uniqKey="Veeraraghavan B" first="B." last="Veeraraghavan">B. Veeraraghavan</name>
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<series><title level="j">New Microbes and New Infections</title>
<idno type="eISSN">2052-2975</idno>
<imprint><date when="2017">2017</date>
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<front><div type="abstract" xml:lang="en"><p><italic>Shigella</italic>
spp. and <italic>Escherichia coli</italic>
are closely related; both belong to the family <italic>Enterobacteriaceae.</italic>
Phenotypically, <italic>Shigella</italic>
spp. and <italic>E. coli</italic>
share many common characteristics, yet they have separate entities in epidemiology and clinical disease, which poses a diagnostic challenge. We collated information for the best possible approach to differentiate clinically relevant <italic>E. coli</italic>
from <italic>Shigella</italic>
spp. We found that a molecular approach is required for confirmation. High discriminatory potential is seen with whole genome sequencing analysed for k-mers and single nucleotide polymorphism. Among these, identification using single nucleotide polymorphism is easy to perform and analyse, and it thus appears more promising. Among the nonmolecular methods, matrix-assisted desorption ionization–time of flight mass spectrometry may be applicable when data analysis is assisted with advanced analytic tools.</p>
</div>
</front>
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<pmc article-type="review-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">New Microbes New Infect</journal-id>
<journal-id journal-id-type="iso-abbrev">New Microbes New Infect</journal-id>
<journal-title-group><journal-title>New Microbes and New Infections</journal-title>
</journal-title-group>
<issn pub-type="epub">2052-2975</issn>
<publisher><publisher-name>Elsevier</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">29204286</article-id>
<article-id pub-id-type="pmc">5711669</article-id>
<article-id pub-id-type="publisher-id">S2052-2975(17)30074-4</article-id>
<article-id pub-id-type="doi">10.1016/j.nmni.2017.09.003</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Mini-Review</subject>
</subj-group>
</article-categories>
<title-group><article-title>Accurate differentiation of <italic>Escherichia coli</italic>
and <italic>Shigella</italic>
serogroups: challenges and strategies</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Devanga Ragupathi</surname>
<given-names>N.K.</given-names>
</name>
</contrib>
<contrib contrib-type="author"><name><surname>Muthuirulandi Sethuvel</surname>
<given-names>D.P.</given-names>
</name>
</contrib>
<contrib contrib-type="author"><name><surname>Inbanathan</surname>
<given-names>F.Y.</given-names>
</name>
</contrib>
<contrib contrib-type="author"><name><surname>Veeraraghavan</surname>
<given-names>B.</given-names>
</name>
<email>vbalaji@cmcvellore.ac.in</email>
<xref rid="cor1" ref-type="corresp">∗</xref>
</contrib>
</contrib-group>
<aff id="aff1">Department of Clinical Microbiology, Christian Medical College, Vellore, India</aff>
<author-notes><corresp id="cor1"><label>∗</label>
Corresponding author. B. Veeraraghavan, Department of Clinical Microbiology, Christian Medical College, Vellore 4, IndiaDepartment of Clinical MicrobiologyChristian Medical CollegeVellore4India <email>vbalaji@cmcvellore.ac.in</email>
</corresp>
</author-notes>
<pub-date pub-type="pmc-release"><day>23</day>
<month>9</month>
<year>2017</year>
</pub-date>
<pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="collection"><month>1</month>
<year>2018</year>
</pub-date>
<pub-date pub-type="epub"><day>23</day>
<month>9</month>
<year>2017</year>
</pub-date>
<volume>21</volume>
<fpage>58</fpage>
<lpage>62</lpage>
<history><date date-type="received"><day>28</day>
<month>6</month>
<year>2017</year>
</date>
<date date-type="rev-recd"><day>7</day>
<month>9</month>
<year>2017</year>
</date>
<date date-type="accepted"><day>19</day>
<month>9</month>
<year>2017</year>
</date>
</history>
<permissions><copyright-statement>© 2017 The Authors</copyright-statement>
<copyright-year>2017</copyright-year>
<license license-type="CC BY-NC-ND" xlink:href="http://creativecommons.org/licenses/by-nc-nd/4.0/"><license-p>This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).</license-p>
</license>
</permissions>
<abstract id="abs0010"><p><italic>Shigella</italic>
spp. and <italic>Escherichia coli</italic>
are closely related; both belong to the family <italic>Enterobacteriaceae.</italic>
Phenotypically, <italic>Shigella</italic>
spp. and <italic>E. coli</italic>
share many common characteristics, yet they have separate entities in epidemiology and clinical disease, which poses a diagnostic challenge. We collated information for the best possible approach to differentiate clinically relevant <italic>E. coli</italic>
from <italic>Shigella</italic>
spp. We found that a molecular approach is required for confirmation. High discriminatory potential is seen with whole genome sequencing analysed for k-mers and single nucleotide polymorphism. Among these, identification using single nucleotide polymorphism is easy to perform and analyse, and it thus appears more promising. Among the nonmolecular methods, matrix-assisted desorption ionization–time of flight mass spectrometry may be applicable when data analysis is assisted with advanced analytic tools.</p>
</abstract>
<kwd-group id="kwrds0010"><title>Keywords</title>
<kwd>16S rRNA</kwd>
<kwd>k-mer</kwd>
<kwd>MALDI-TOF MS</kwd>
<kwd>single nucleotide polymorphism</kwd>
<kwd>whole genome sequencing</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
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