Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae
Identifieur interne : 001B01 ( Istex/Corpus ); précédent : 001B00; suivant : 001B02Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae
Auteurs : R. Wang ; M. Chen ; C. Li ; L. Li ; X. Gan ; J. Huang ; A. Lei ; Z. Xu ; W. LiangSource :
- Journal of Fish Biology [ 0022-1112 ] ; 2013-02.
English descriptors
- Teeft :
- Aureus, Aureus strain, Authors journal, British isles, Cdna, Challenge group, Chemokine receptor, Clone, Contig, Contigs, Cxcr4, Danio rerio, Expression levels, Fish biology, Fisheries society, Fishery, Fkcs, Gene expression, Guangxi, Head kidney, Heat shock protein, Immune, Immune response, Infectious salmon anemia virus, Iniae, Leucocyte, Matrix metalloproteinase, Mmp9, Mossambicus, Mrna, Negative correlation, Niloticus, Novel genes, Oreochromis, Oreochromis aureus, Oreochromis mossambicus, Paralichthys olivaceus, Peripheral blood leucocytes, Pgrn, Progranulin, Receptor, Relative expression level, Ribosomal protein, Rna, Salar, Salmo, Salmo salar, Scophthalmus maximus, Seriola quinqueradiata, Singleton, Spleen, Streptococcus, Streptococcus iniae, Subtractive, Suppression subtractive hybridization, Tetraodon nigroviridis, Tilapia, Total rnas, Unnamed protein product, Whole blood.
Abstract
Two subtractive complementary DNA libraries were constructed from Nile tilapia Oreochromis niloticus vaccinated with formalin‐killed Streptococcus iniae cells, and a further two constructed from O. niloticus infected with S. iniae. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, β2m, α‐ha, mmp9, pgrn and cxcr4, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of Oreochromis spp.: genetically improved farmed tilapia (O. niloticus), Oreochromis aureus, O. niloticus and O. niloticus×O. aureus, with different disease resistance following infection with S. iniae. pgrn was up‐regulated more significantly in disease‐resistant strains than in the susceptible. α‐ha was markedly down‐regulated, and no significant differences in the expression level of β2m were detected. A negative correlation was observed between the expression of mmp9 and that of cxcr4. The results provide insight into the molecular response of O. niloticus to S. iniae infection.
Url:
DOI: 10.1111/jfb.12004
Links to Exploration step
ISTEX:39BEE3B862D7C96AA3E0ECEA5AEF7B399FFE7534Le document en format XML
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Li</name><affiliation><mods:affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Li, L" sort="Li, L" uniqKey="Li L" first="L." last="Li">L. Li</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Gan, X" sort="Gan, X" uniqKey="Gan X" first="X." last="Gan">X. Gan</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Huang, J" sort="Huang, J" uniqKey="Huang J" first="J." last="Huang">J. 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Wang</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Chen, M" sort="Chen, M" uniqKey="Chen M" first="M." last="Chen">M. Chen</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Li, C" sort="Li, C" uniqKey="Li C" first="C." last="Li">C. Li</name><affiliation><mods:affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Li, L" sort="Li, L" uniqKey="Li L" first="L." last="Li">L. Li</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Gan, X" sort="Gan, X" uniqKey="Gan X" first="X." last="Gan">X. Gan</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Huang, J" sort="Huang, J" uniqKey="Huang J" first="J." last="Huang">J. Huang</name><affiliation><mods:affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Lei, A" sort="Lei, A" uniqKey="Lei A" first="A." last="Lei">A. Lei</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Xu, Z" sort="Xu, Z" uniqKey="Xu Z" first="Z." last="Xu">Z. Xu</name><affiliation><mods:affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation></author><author><name sortKey="Liang, W" sort="Liang, W" uniqKey="Liang W" first="W." last="Liang">W. Liang</name><affiliation><mods:affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</mods:affiliation></affiliation><affiliation><mods:affiliation>E-mail: nnlww@126.com</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j" type="main">Journal of Fish Biology</title><title level="j" type="alt">JOURNAL OF FISH BIOLOGY</title><idno type="ISSN">0022-1112</idno><idno type="eISSN">1095-8649</idno><imprint><biblScope unit="vol">82</biblScope><biblScope unit="issue">2</biblScope><biblScope unit="page" from="492">492</biblScope><biblScope unit="page" to="504">504</biblScope><biblScope unit="page-count">13</biblScope><publisher>Blackwell Publishing Ltd</publisher><pubPlace>Oxford, UK</pubPlace><date type="published" when="2013-02">2013-02</date></imprint><idno type="ISSN">0022-1112</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0022-1112</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="Teeft" xml:lang="en"><term>Aureus</term><term>Aureus strain</term><term>Authors journal</term><term>British isles</term><term>Cdna</term><term>Challenge group</term><term>Chemokine receptor</term><term>Clone</term><term>Contig</term><term>Contigs</term><term>Cxcr4</term><term>Danio rerio</term><term>Expression levels</term><term>Fish biology</term><term>Fisheries society</term><term>Fishery</term><term>Fkcs</term><term>Gene expression</term><term>Guangxi</term><term>Head kidney</term><term>Heat shock protein</term><term>Immune</term><term>Immune response</term><term>Infectious salmon anemia virus</term><term>Iniae</term><term>Leucocyte</term><term>Matrix metalloproteinase</term><term>Mmp9</term><term>Mossambicus</term><term>Mrna</term><term>Negative correlation</term><term>Niloticus</term><term>Novel genes</term><term>Oreochromis</term><term>Oreochromis aureus</term><term>Oreochromis mossambicus</term><term>Paralichthys olivaceus</term><term>Peripheral blood leucocytes</term><term>Pgrn</term><term>Progranulin</term><term>Receptor</term><term>Relative expression level</term><term>Ribosomal protein</term><term>Rna</term><term>Salar</term><term>Salmo</term><term>Salmo salar</term><term>Scophthalmus maximus</term><term>Seriola quinqueradiata</term><term>Singleton</term><term>Spleen</term><term>Streptococcus</term><term>Streptococcus iniae</term><term>Subtractive</term><term>Suppression subtractive hybridization</term><term>Tetraodon nigroviridis</term><term>Tilapia</term><term>Total rnas</term><term>Unnamed protein product</term><term>Whole blood</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Two subtractive complementary DNA libraries were constructed from Nile tilapia Oreochromis niloticus vaccinated with formalin‐killed Streptococcus iniae cells, and a further two constructed from O. niloticus infected with S. iniae. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, β2m, α‐ha, mmp9, pgrn and cxcr4, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of Oreochromis spp.: genetically improved farmed tilapia (O. niloticus), Oreochromis aureus, O. niloticus and O. niloticus×O. aureus, with different disease resistance following infection with S. iniae. pgrn was up‐regulated more significantly in disease‐resistant strains than in the susceptible. α‐ha was markedly down‐regulated, and no significant differences in the expression level of β2m were detected. A negative correlation was observed between the expression of mmp9 and that of cxcr4. The results provide insight into the molecular response of O. niloticus to S. iniae infection.</div></front></TEI><istex><corpusName>wiley</corpusName><keywords><teeft><json:string>contig</json:string><json:string>niloticus</json:string><json:string>oreochromis</json:string><json:string>iniae</json:string><json:string>fish biology</json:string><json:string>singleton</json:string><json:string>aureus</json:string><json:string>cdna</json:string><json:string>tilapia</json:string><json:string>cxcr4</json:string><json:string>mmp9</json:string><json:string>pgrn</json:string><json:string>british isles</json:string><json:string>fisheries society</json:string><json:string>authors journal</json:string><json:string>receptor</json:string><json:string>head kidney</json:string><json:string>immune</json:string><json:string>mrna</json:string><json:string>leucocyte</json:string><json:string>fishery</json:string><json:string>fkcs</json:string><json:string>contigs</json:string><json:string>salar</json:string><json:string>salmo</json:string><json:string>clone</json:string><json:string>streptococcus</json:string><json:string>progranulin</json:string><json:string>rna</json:string><json:string>mossambicus</json:string><json:string>oreochromis mossambicus</json:string><json:string>guangxi</json:string><json:string>subtractive</json:string><json:string>streptococcus iniae</json:string><json:string>salmo salar</json:string><json:string>scophthalmus maximus</json:string><json:string>ribosomal protein</json:string><json:string>total rnas</json:string><json:string>peripheral blood leucocytes</json:string><json:string>unnamed protein product</json:string><json:string>suppression subtractive hybridization</json:string><json:string>tetraodon nigroviridis</json:string><json:string>gene expression</json:string><json:string>chemokine receptor</json:string><json:string>danio rerio</json:string><json:string>challenge group</json:string><json:string>spleen</json:string><json:string>whole blood</json:string><json:string>heat shock protein</json:string><json:string>immune response</json:string><json:string>expression levels</json:string><json:string>seriola quinqueradiata</json:string><json:string>infectious salmon anemia virus</json:string><json:string>novel genes</json:string><json:string>oreochromis aureus</json:string><json:string>negative correlation</json:string><json:string>paralichthys olivaceus</json:string><json:string>relative expression level</json:string><json:string>aureus strain</json:string><json:string>matrix metalloproteinase</json:string></teeft></keywords><author><json:item><name>R. Wang</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>M. Chen</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>C. Li</name><affiliations><json:string>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>L.‐P. Li</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>X. Gan</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>J. Huang</name><affiliations><json:string>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>A.‐Y. Lei</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>Z.‐H. Xu</name><affiliations><json:string>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</json:string></affiliations></json:item><json:item><name>W.‐W. Liang</name><affiliations><json:string>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</json:string><json:string>E-mail: nnlww@126.com</json:string></affiliations></json:item></author><subject><json:item><lang><json:string>eng</json:string></lang><value>gene expression</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>qRT‐PCR</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>suppression subtractive hybridization</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>up‐regulation</value></json:item><json:item><lang><json:string>eng</json:string></lang><value>vaccination</value></json:item></subject><articleId><json:string>JFB12004</json:string></articleId><arkIstex>ark:/67375/WNG-7R1VRDTB-G</arkIstex><language><json:string>eng</json:string></language><originalGenre><json:string>article</json:string></originalGenre><abstract>Two subtractive complementary DNA libraries were constructed from Nile tilapia Oreochromis niloticus vaccinated with formalin‐killed Streptococcus iniae cells, and a further two constructed from O. niloticus infected with S. iniae. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, β2m, α‐ha, mmp9, pgrn and cxcr4, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of Oreochromis spp.: genetically improved farmed tilapia (O. niloticus), Oreochromis aureus, O. niloticus and O. niloticus×O. aureus, with different disease resistance following infection with S. iniae. pgrn was up‐regulated more significantly in disease‐resistant strains than in the susceptible. α‐ha was markedly down‐regulated, and no significant differences in the expression level of β2m were detected. A negative correlation was observed between the expression of mmp9 and that of cxcr4. The results provide insight into the molecular response of O. niloticus to S. iniae infection.</abstract><qualityIndicators><score>9.064</score><pdfWordCount>5590</pdfWordCount><pdfCharCount>32413</pdfCharCount><pdfVersion>1.3</pdfVersion><pdfPageCount>13</pdfPageCount><pdfPageSize>487.559 x 702.992 pts</pdfPageSize><pdfWordsPerPage>430</pdfWordsPerPage><pdfText>true</pdfText><refBibsNative>true</refBibsNative><abstractWordCount>172</abstractWordCount><abstractCharCount>1233</abstractCharCount><keywordCount>5</keywordCount></qualityIndicators><title>Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae</title><pmid><json:string>23398064</json:string></pmid><genre><json:string>article</json:string></genre><host><title>Journal of Fish Biology</title><language><json:string>unknown</json:string></language><doi><json:string>10.1111/(ISSN)1095-8649</json:string></doi><issn><json:string>0022-1112</json:string></issn><eissn><json:string>1095-8649</json:string></eissn><publisherId><json:string>JFB</json:string></publisherId><volume>82</volume><issue>2</issue><pages><first>492</first><last>504</last><total>13</total></pages><genre><json:string>journal</json:string></genre><subject><json:item><value>REGULAR PAPER</value></json:item><json:item><value>REGULAR PAPERS</value></json:item></subject></host><namedEntities><unitex><date><json:string>40S</json:string><json:string>1976</json:string><json:string>2013</json:string><json:string>60S</json:string><json:string>14-3-3</json:string><json:string>1261</json:string><json:string>16s</json:string><json:string>1500</json:string><json:string>2820</json:string></date><geogName><json:string>Nile</json:string></geogName><orgName><json:string>National Tilapia Seed Farm</json:string><json:string>European Molecular Biology Laboratory, DNA Database of Japan and Protein</json:string><json:string>Israel, Australia, Japan</json:string><json:string>Clontech</json:string><json:string>Guangxi University</json:string><json:string>China and Guangxi</json:string><json:string>Research Projects</json:string></orgName><orgName_funder></orgName_funder><orgName_provider></orgName_provider><persName><json:string>W. 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Journal of Fish Biology © 2013 The Fisheries Society of the British Isles</licence></availability><date type="published" when="2013-02"></date></publicationStmt><notesStmt><note type="content-type" subtype="article" source="article" scheme="https://content-type.data.istex.fr/ark:/67375/XTP-6N5SZHKN-D">article</note><note type="publication-type" subtype="journal" scheme="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</note></notesStmt><sourceDesc><biblStruct type="article"><analytic><title level="a" type="main">Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae</title><author xml:id="author-0000"><persName><forename type="first">R.</forename><surname>Wang</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0001"><persName><forename type="first">M.</forename><surname>Chen</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0002"><persName><forename type="first">C.</forename><surname>Li</surname></persName><affiliation><orgName type="institution">College of Animal Science and Technology</orgName><orgName type="institution">Guangxi University</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0003"><persName><forename type="first">L.‐P.</forename><surname>Li</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0004"><persName><forename type="first">X.</forename><surname>Gan</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0005"><persName><forename type="first">J.</forename><surname>Huang</surname></persName><affiliation><orgName type="institution">College of Animal Science and Technology</orgName><orgName type="institution">Guangxi University</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0006"><persName><forename type="first">A.‐Y.</forename><surname>Lei</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0007"><persName><forename type="first">Z.‐H.</forename><surname>Xu</surname></persName><affiliation><orgName type="institution">College of Animal Science and Technology</orgName><orgName type="institution">Guangxi University</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><author xml:id="author-0008" role="corresp"><persName><forename type="first">W.‐W.</forename><surname>Liang</surname></persName><affiliation><orgName type="institution">Guangxi Institute of Fisheries</orgName><address><addrLine>Nanning</addrLine><addrLine>Guangxi, People's Republic of China</addrLine><country key="CN" xml:lang="en">CHINA</country></address></affiliation></author><idno type="istex">39BEE3B862D7C96AA3E0ECEA5AEF7B399FFE7534</idno><idno type="ark">ark:/67375/WNG-7R1VRDTB-G</idno><idno type="DOI">10.1111/jfb.12004</idno><idno type="unit">JFB12004</idno><idno type="toTypesetVersion">file:JFB.JFB12004.pdf</idno></analytic><monogr><title level="j" type="main">Journal of Fish Biology</title><title level="j" type="alt">JOURNAL OF FISH BIOLOGY</title><idno type="pISSN">0022-1112</idno><idno type="eISSN">1095-8649</idno><idno type="book-DOI">10.1111/(ISSN)1095-8649</idno><idno type="book-part-DOI">10.1111/jfb.2013.82.issue-2</idno><idno type="product">JFB</idno><idno type="publisherDivision">ST</idno><imprint><biblScope 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<ref target="http://www.tei-c.org/">We use TEI</ref></desc></application></appInfo></encodingDesc><profileDesc><abstract xml:lang="en" style="main"><p>Two subtractive complementary DNA libraries were constructed from Nile tilapia <hi rend="italic">Oreochromis niloticus</hi> vaccinated with formalin‐killed <hi rend="italic">Streptococcus iniae</hi> cells, and a further two constructed from <hi rend="italic">O. niloticus</hi> infected with <hi rend="italic">S. iniae</hi>. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, <hi rend="italic">β2m, α‐ha</hi>, <hi rend="italic">mmp9</hi>, <hi rend="italic">pgrn</hi> and <hi rend="italic">cxcr4</hi>, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of <hi rend="italic">Oreochromis</hi> spp.: genetically improved farmed tilapia (<hi rend="italic">O. niloticus</hi>), <hi rend="italic">Oreochromis aureus</hi>, <hi rend="italic">O. niloticus</hi> and <hi rend="italic">O. niloticus</hi>×<hi rend="italic">O. aureus</hi>, with different disease resistance following infection with <hi rend="italic">S. iniae</hi>. <hi rend="italic">pgrn</hi> was up‐regulated more significantly in disease‐resistant strains than in the susceptible. <hi rend="italic">α‐ha</hi> was markedly down‐regulated, and no significant differences in the expression level of <hi rend="italic">β2m</hi> were detected. A negative correlation was observed between the expression of <hi rend="italic">mmp9</hi> and that of <hi rend="italic">cxcr4</hi>. The results provide insight into the molecular response of <hi rend="italic">O. niloticus</hi> to <hi rend="italic">S. iniae</hi> infection.</p></abstract><textClass><keywords xml:lang="en"><term xml:id="k1">gene expression</term><term xml:id="k2">qRT‐PCR</term><term xml:id="k3">suppression subtractive hybridization</term><term xml:id="k4">up‐regulation</term><term xml:id="k5">vaccination</term></keywords><keywords rend="articleCategory"><term>REGULAR PAPER</term></keywords><keywords rend="tocHeading1"><term>REGULAR PAPERS</term></keywords></textClass><langUsage><language ident="en"></language></langUsage></profileDesc><revisionDesc><change when="2019-12-20" who="#istex" xml:id="pub2tei">formatting</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><extension>txt</extension><original>false</original><mimetype>text/plain</mimetype><uri>https://api.istex.fr/ark:/67375/WNG-7R1VRDTB-G/fulltext.txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Wiley, elements deleted: body"><istex:xmlDeclaration>version="1.0" encoding="UTF-8" standalone="yes"</istex:xmlDeclaration><istex:document><component version="2.0" type="serialArticle" xml:lang="en" xml:id="jfb12004"><header><publicationMeta level="product"><publisherInfo><publisherName>Blackwell Publishing Ltd</publisherName><publisherLoc>Oxford, UK</publisherLoc></publisherInfo><doi origin="wiley" registered="yes">10.1111/(ISSN)1095-8649</doi><issn type="print">0022-1112</issn><issn type="electronic">1095-8649</issn><idGroup><id type="product" value="JFB"></id><id type="publisherDivision" value="ST"></id></idGroup><titleGroup><title type="main" sort="JOURNAL OF FISH BIOLOGY">Journal of Fish Biology</title></titleGroup></publicationMeta><publicationMeta level="part" position="02102"><doi origin="wiley">10.1111/jfb.2013.82.issue-2</doi><copyright ownership="thirdParty">Journal of Fish Biology © 2013 The Fisheries Society of the British Isles</copyright><numberingGroup><numbering type="journalVolume" number="82">82</numbering><numbering type="journalIssue">2</numbering></numberingGroup><coverDate startDate="2013-02">February 2013</coverDate></publicationMeta><publicationMeta level="unit" type="article" position="80" status="forIssue"><doi origin="wiley">10.1111/jfb.12004</doi><idGroup><id type="unit" value="JFB12004"></id></idGroup><countGroup><count type="pageTotal" number="13"></count></countGroup><titleGroup><title type="articleCategory">REGULAR PAPER</title><title type="tocHeading1">REGULAR PAPERS</title></titleGroup><copyright ownership="thirdParty">© 2013 The Authors. Journal of Fish Biology © 2013 The Fisheries Society of the British Isles</copyright><eventGroup><event type="xmlConverted" agent="Converter:BPG_TO_WML3G version:3.2.0 mode:FullText" date="2013-02-06"></event><event type="xmlCorrected" date="2013-02-08"></event><event type="publishedOnlineEarlyUnpaginated" date="2013-01-21"></event><event type="publishedOnlineFinalForm" date="2013-02-11"></event><event type="firstOnline" date="2013-01-21"></event><event type="xmlConverted" agent="Converter:WILEY_ML3G_TO_WILEY_ML3GV2 version:3.8.8" date="2014-01-30"></event><event type="xmlConverted" agent="Converter:WML3G_To_WML3G version:4.6.4 mode:FullText" date="2015-10-03"></event></eventGroup><numberingGroup><numbering type="pageFirst">492</numbering><numbering type="pageLast">504</numbering></numberingGroup><correspondenceTo>Tel.: + 86 771 5300191; email: <email>nnlww@126.com</email></correspondenceTo><linkGroup><link type="toTypesetVersion" href="file:JFB.JFB12004.pdf"></link></linkGroup></publicationMeta><contentMeta><unparsedEditorialHistory>(Received 26 November 2011, Accepted 19 October 2012)</unparsedEditorialHistory><countGroup><count type="figureTotal" number="4"></count><count type="tableTotal" number="3"></count><count type="formulaTotal" number="0"></count><count type="referenceTotal" number="29"></count></countGroup><titleGroup><title type="main">Identification of multiple genes and their expression profiles in four strains of <i>Oreochromis</i> spp. in response to <i>Streptococcus iniae</i></title><title type="shortAuthors">R. WANG <i>ET AL</i></title></titleGroup><creators><creator creatorRole="author" xml:id="cr1" affiliationRef="#a1"><personName><givenNames>R.</givenNames><familyName>Wang</familyName></personName></creator><creator creatorRole="author" xml:id="cr2" affiliationRef="#a1"><personName><givenNames>M.</givenNames><familyName>Chen</familyName></personName></creator><creator creatorRole="author" xml:id="cr3" affiliationRef="#a2"><personName><givenNames>C.</givenNames><familyName>Li</familyName></personName></creator><creator creatorRole="author" xml:id="cr4" affiliationRef="#a1"><personName><givenNames>L.‐P.</givenNames><familyName>Li</familyName></personName></creator><creator creatorRole="author" xml:id="cr5" affiliationRef="#a1"><personName><givenNames>X.</givenNames><familyName>Gan</familyName></personName></creator><creator creatorRole="author" xml:id="cr6" affiliationRef="#a2"><personName><givenNames>J.</givenNames><familyName>Huang</familyName></personName></creator><creator creatorRole="author" xml:id="cr7" affiliationRef="#a1"><personName><givenNames>A.‐Y.</givenNames><familyName>Lei</familyName></personName></creator><creator creatorRole="author" xml:id="cr8" affiliationRef="#a2"><personName><givenNames>Z.‐H.</givenNames><familyName>Xu</familyName></personName></creator><creator creatorRole="author" xml:id="cr9" affiliationRef="#a1" corresponding="yes"><personName><givenNames>W.‐W.</givenNames><familyName>Liang</familyName></personName></creator></creators><affiliationGroup><affiliation xml:id="a1" countryCode="CN"><unparsedAffiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</unparsedAffiliation></affiliation><affiliation xml:id="a2" countryCode="CN"><unparsedAffiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</unparsedAffiliation></affiliation></affiliationGroup><keywordGroup xml:lang="en"><keyword xml:id="k1">gene expression</keyword><keyword xml:id="k2">qRT‐PCR</keyword><keyword xml:id="k3">suppression subtractive hybridization</keyword><keyword xml:id="k4">up‐regulation</keyword><keyword xml:id="k5">vaccination</keyword></keywordGroup><abstractGroup><abstract type="main" xml:lang="en"><p>Two subtractive complementary DNA libraries were constructed from Nile tilapia <i>Oreochromis niloticus</i> vaccinated with formalin‐killed <i>Streptococcus iniae</i> cells, and a further two constructed from <i>O. niloticus</i> infected with <i>S. iniae</i>. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, <i>β2m, α‐ha</i>, <i>mmp9</i>, <i>pgrn</i> and <i>cxcr4</i>, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of <i>Oreochromis</i> spp.: genetically improved farmed tilapia (<i>O. niloticus</i>), <i>Oreochromis aureus</i>, <i>O. niloticus</i> and <i>O. niloticus</i>×<i>O. aureus</i>, with different disease resistance following infection with <i>S. iniae</i>. <i>pgrn</i> was up‐regulated more significantly in disease‐resistant strains than in the susceptible. <i>α‐ha</i> was markedly down‐regulated, and no significant differences in the expression level of <i>β2m</i> were detected. A negative correlation was observed between the expression of <i>mmp9</i> and that of <i>cxcr4</i>. The results provide insight into the molecular response of <i>O. niloticus</i> to <i>S. iniae</i> infection.</p></abstract></abstractGroup></contentMeta></header></component></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae</title></titleInfo><titleInfo type="alternative" contentType="CDATA" lang="en"><title>Identification of multiple genes and their expression profiles in four strains of Oreochromis spp. in response to Streptococcus iniae</title></titleInfo><name type="personal"><namePart type="given">R.</namePart><namePart type="family">Wang</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">M.</namePart><namePart type="family">Chen</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">C.</namePart><namePart type="family">Li</namePart><affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">L.‐P.</namePart><namePart type="family">Li</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">X.</namePart><namePart type="family">Gan</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">J.</namePart><namePart type="family">Huang</namePart><affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">A.‐Y.</namePart><namePart type="family">Lei</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Z.‐H.</namePart><namePart type="family">Xu</namePart><affiliation>College of Animal Science and Technology, Guangxi University, Nanning, Guangxi, People's Republic of China</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">W.‐W.</namePart><namePart type="family">Liang</namePart><affiliation>Guangxi Institute of Fisheries, Nanning, Guangxi, People's Republic of China</affiliation><affiliation>E-mail: nnlww@126.com</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="article" displayLabel="article" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-6N5SZHKN-D">article</genre><originInfo><publisher>Blackwell Publishing Ltd</publisher><place><placeTerm type="text">Oxford, UK</placeTerm></place><dateIssued encoding="w3cdtf">2013-02</dateIssued><edition>(Received 26 November 2011, Accepted 19 October 2012)</edition><copyrightDate encoding="w3cdtf">2013</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><physicalDescription><extent unit="figures">4</extent><extent unit="tables">3</extent><extent unit="formulas">0</extent><extent unit="references">29</extent></physicalDescription><abstract lang="en">Two subtractive complementary DNA libraries were constructed from Nile tilapia Oreochromis niloticus vaccinated with formalin‐killed Streptococcus iniae cells, and a further two constructed from O. niloticus infected with S. iniae. Of the 68 distinct expressed sequence tag (EST) contigs and singletons, 45 and 13 EST shared high similarities with genes of known and unknown functions, respectively. Ten EST contigs and singletons had no significant similarity to any sequences. Five putative immune‐relevant genes, β2m, α‐ha, mmp9, pgrn and cxcr4, were selected for quantitative reverse‐transcription polymerase chain reaction in four strains of Oreochromis spp.: genetically improved farmed tilapia (O. niloticus), Oreochromis aureus, O. niloticus and O. niloticus×O. aureus, with different disease resistance following infection with S. iniae. pgrn was up‐regulated more significantly in disease‐resistant strains than in the susceptible. α‐ha was markedly down‐regulated, and no significant differences in the expression level of β2m were detected. A negative correlation was observed between the expression of mmp9 and that of cxcr4. The results provide insight into the molecular response of O. niloticus to S. iniae infection.</abstract><subject lang="en"><genre>keywords</genre><topic>gene expression</topic><topic>qRT‐PCR</topic><topic>suppression subtractive hybridization</topic><topic>up‐regulation</topic><topic>vaccination</topic></subject><relatedItem type="host"><titleInfo><title>Journal of Fish Biology</title></titleInfo><genre type="journal" authority="ISTEX" authorityURI="https://publication-type.data.istex.fr" valueURI="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</genre><subject><genre>article-category</genre><topic>REGULAR PAPER</topic><topic>REGULAR PAPERS</topic></subject><identifier type="ISSN">0022-1112</identifier><identifier type="eISSN">1095-8649</identifier><identifier type="DOI">10.1111/(ISSN)1095-8649</identifier><identifier type="PublisherID">JFB</identifier><part><date>2013</date><detail type="volume"><caption>vol.</caption><number>82</number></detail><detail type="issue"><caption>no.</caption><number>2</number></detail><extent unit="pages"><start>492</start><end>504</end><total>13</total></extent></part></relatedItem><relatedItem type="references" displayLabel="cit1"><titleInfo><title>Streptococcus iniae: an aquatic pathogen of global veterinary significance and a challenging candidate for reliable vaccination</title></titleInfo><name type="personal"><namePart type="given">W.</namePart><namePart type="family">Agnew</namePart><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">A. 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