Diagnosis and Genotyping of Coxiella burnetii Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA
Identifieur interne : 000886 ( Main/Exploration ); précédent : 000885; suivant : 000887Diagnosis and Genotyping of Coxiella burnetii Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA
Auteurs : Maiko Kondo [États-Unis] ; Sudeb C. Dalai [États-Unis] ; Shivkumar Venkatasubrahmanyam [États-Unis] ; Nell Eisenberg [États-Unis] ; Brian D. Robinson [États-Unis] ; Lars F. Westblade [États-Unis] ; Kristen M. Marks [États-Unis]Source :
- Open Forum Infectious Diseases [ 2328-8957 ] ; 2019.
Abstract
Determining the causative etiology of culture-negative endocarditis can be challenging. We performed next-generation sequencing of plasma microbial cell-free DNA to facilitate rapid diagnosis and genotyping of
Url:
DOI: 10.1093/ofid/ofz242
PubMed: 31249846
PubMed Central: 6580995
Affiliations:
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Dalai</name><affiliation wicri:level="2"><nlm:aff id="AF0002">Karius, Inc., Redwood City, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Karius, Inc., Redwood City</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="AF0003">Division of Infectious Diseases, Stanford University Medical Center, Stanford, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Division of Infectious Diseases, Stanford University Medical Center, Stanford</wicri:cityArea></affiliation></author><author><name sortKey="Venkatasubrahmanyam, Shivkumar" sort="Venkatasubrahmanyam, Shivkumar" uniqKey="Venkatasubrahmanyam S" first="Shivkumar" last="Venkatasubrahmanyam">Shivkumar Venkatasubrahmanyam</name><affiliation wicri:level="2"><nlm:aff id="AF0002">Karius, Inc., Redwood City, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Karius, Inc., Redwood City</wicri:cityArea></affiliation></author><author><name sortKey="Eisenberg, Nell" sort="Eisenberg, Nell" uniqKey="Eisenberg N" first="Nell" last="Eisenberg">Nell Eisenberg</name><affiliation wicri:level="2"><nlm:aff id="AF0004">Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Robinson, Brian D" sort="Robinson, Brian D" uniqKey="Robinson B" first="Brian D" last="Robinson">Brian D. Robinson</name><affiliation wicri:level="2"><nlm:aff id="AF0005">Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. Westblade</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="AF0005">Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Marks, Kristen M" sort="Marks, Kristen M" uniqKey="Marks K" first="Kristen M" last="Marks">Kristen M. Marks</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author></analytic><series><title level="j">Open Forum Infectious Diseases</title><idno type="eISSN">2328-8957</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Abstract</title><p>Determining the causative etiology of culture-negative endocarditis can be challenging. We performed next-generation sequencing of plasma microbial cell-free DNA to facilitate rapid diagnosis and genotyping of <italic>Coxiella burnetii</italic> in a patient with culture-negative endocarditis of a prosthetic pulmonary valve, enabling early targeted treatment prior to valve replacement surgery.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Tattevin, P" uniqKey="Tattevin P">P Tattevin</name></author><author><name sortKey="Watt, G" uniqKey="Watt G">G Watt</name></author><author><name sortKey="Revest, M" uniqKey="Revest M">M Revest</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blauwkamp, Ta" uniqKey="Blauwkamp T">TA Blauwkamp</name></author><author><name sortKey="Thair, S" uniqKey="Thair S">S Thair</name></author><author><name sortKey="Rosen, Mj" uniqKey="Rosen M">MJ Rosen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Burnham, P" uniqKey="Burnham P">P Burnham</name></author><author><name sortKey="Dadhania, D" uniqKey="Dadhania D">D Dadhania</name></author><author><name sortKey="Heyang, M" uniqKey="Heyang M">M Heyang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Vlaminck, I" uniqKey="De Vlaminck I">I De Vlaminck</name></author><author><name sortKey="Martin, L" uniqKey="Martin L">L Martin</name></author><author><name sortKey="Kertesz, M" uniqKey="Kertesz M">M Kertesz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Perkins, Km" uniqKey="Perkins K">KM Perkins</name></author><author><name sortKey="Lawsin, A" uniqKey="Lawsin A">A Lawsin</name></author><author><name sortKey="Hasan, Na" uniqKey="Hasan N">NA Hasan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nomura, J" uniqKey="Nomura J">J Nomura</name></author><author><name sortKey="Rieg, G" uniqKey="Rieg G">G Rieg</name></author><author><name sortKey="Bluestone, G" uniqKey="Bluestone G">G Bluestone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hornstra, Hm" uniqKey="Hornstra H">HM Hornstra</name></author><author><name sortKey="Priestley, Ra" uniqKey="Priestley R">RA Priestley</name></author><author><name sortKey="Georgia, Sm" uniqKey="Georgia S">SM Georgia</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Glazunova, O" uniqKey="Glazunova O">O Glazunova</name></author><author><name sortKey="Roux, V" uniqKey="Roux V">V Roux</name></author><author><name sortKey="Freylikman, O" uniqKey="Freylikman O">O Freylikman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kersh, Gj" uniqKey="Kersh G">GJ Kersh</name></author><author><name sortKey="Priestley, Ra" uniqKey="Priestley R">RA Priestley</name></author><author><name sortKey="Hornstra, Hm" uniqKey="Hornstra H">HM Hornstra</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Anderson, A" uniqKey="Anderson A">A Anderson</name></author><author><name sortKey="Bijlmer, H" uniqKey="Bijlmer H">H Bijlmer</name></author><author><name sortKey="Fournier, Pe" uniqKey="Fournier P">PE Fournier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reimer, Lg" uniqKey="Reimer L">LG Reimer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Madariaga, Mg" uniqKey="Madariaga M">MG Madariaga</name></author><author><name sortKey="Rezai, K" uniqKey="Rezai K">K Rezai</name></author><author><name sortKey="Trenholme, Gm" uniqKey="Trenholme G">GM Trenholme</name></author><author><name sortKey="Weinstein, Ra" uniqKey="Weinstein R">RA Weinstein</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li><li>État de New York</li></region></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Kondo, Maiko" sort="Kondo, Maiko" uniqKey="Kondo M" first="Maiko" last="Kondo">Maiko Kondo</name></region><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. Dalai</name><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. Dalai</name><name sortKey="Eisenberg, Nell" sort="Eisenberg, Nell" uniqKey="Eisenberg N" first="Nell" last="Eisenberg">Nell Eisenberg</name><name sortKey="Marks, Kristen M" sort="Marks, Kristen M" uniqKey="Marks K" first="Kristen M" last="Marks">Kristen M. Marks</name><name sortKey="Robinson, Brian D" sort="Robinson, Brian D" uniqKey="Robinson B" first="Brian D" last="Robinson">Brian D. Robinson</name><name sortKey="Venkatasubrahmanyam, Shivkumar" sort="Venkatasubrahmanyam, Shivkumar" uniqKey="Venkatasubrahmanyam S" first="Shivkumar" last="Venkatasubrahmanyam">Shivkumar Venkatasubrahmanyam</name><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. Westblade</name><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. 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