Diagnosis and Genotyping of Coxiella burnetii Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA
Identifieur interne : 000735 ( Ncbi/Merge ); précédent : 000734; suivant : 000736Diagnosis and Genotyping of Coxiella burnetii Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA
Auteurs : Maiko Kondo [États-Unis] ; Sudeb C. Dalai [États-Unis] ; Shivkumar Venkatasubrahmanyam [États-Unis] ; Nell Eisenberg [États-Unis] ; Brian D. Robinson [États-Unis] ; Lars F. Westblade [États-Unis] ; Kristen M. Marks [États-Unis]Source :
- Open Forum Infectious Diseases [ 2328-8957 ] ; 2019.
Abstract
Determining the causative etiology of culture-negative endocarditis can be challenging. We performed next-generation sequencing of plasma microbial cell-free DNA to facilitate rapid diagnosis and genotyping of
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DOI: 10.1093/ofid/ofz242
PubMed: 31249846
PubMed Central: 6580995
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Diagnosis and Genotyping of <italic>Coxiella burnetii</italic> Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA</title><author><name sortKey="Kondo, Maiko" sort="Kondo, Maiko" uniqKey="Kondo M" first="Maiko" last="Kondo">Maiko Kondo</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. 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Marks</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">31249846</idno><idno type="pmc">6580995</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580995</idno><idno type="RBID">PMC:6580995</idno><idno type="doi">10.1093/ofid/ofz242</idno><date when="2019">2019</date><idno type="wicri:Area/Pmc/Corpus">000266</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000266</idno><idno type="wicri:Area/Pmc/Curation">000266</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000266</idno><idno type="wicri:Area/Pmc/Checkpoint">000825</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000825</idno><idno type="wicri:Area/Ncbi/Merge">000735</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Diagnosis and Genotyping of <italic>Coxiella burnetii</italic> Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA</title><author><name sortKey="Kondo, Maiko" sort="Kondo, Maiko" uniqKey="Kondo M" first="Maiko" last="Kondo">Maiko Kondo</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. Dalai</name><affiliation wicri:level="2"><nlm:aff id="AF0002">Karius, Inc., Redwood City, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Karius, Inc., Redwood City</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="AF0003">Division of Infectious Diseases, Stanford University Medical Center, Stanford, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Division of Infectious Diseases, Stanford University Medical Center, Stanford</wicri:cityArea></affiliation></author><author><name sortKey="Venkatasubrahmanyam, Shivkumar" sort="Venkatasubrahmanyam, Shivkumar" uniqKey="Venkatasubrahmanyam S" first="Shivkumar" last="Venkatasubrahmanyam">Shivkumar Venkatasubrahmanyam</name><affiliation wicri:level="2"><nlm:aff id="AF0002">Karius, Inc., Redwood City, California</nlm:aff><country>États-Unis</country><placeName><region type="state">Californie</region></placeName><wicri:cityArea>Karius, Inc., Redwood City</wicri:cityArea></affiliation></author><author><name sortKey="Eisenberg, Nell" sort="Eisenberg, Nell" uniqKey="Eisenberg N" first="Nell" last="Eisenberg">Nell Eisenberg</name><affiliation wicri:level="2"><nlm:aff id="AF0004">Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Robinson, Brian D" sort="Robinson, Brian D" uniqKey="Robinson B" first="Brian D" last="Robinson">Brian D. Robinson</name><affiliation wicri:level="2"><nlm:aff id="AF0005">Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. Westblade</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation><affiliation wicri:level="2"><nlm:aff id="AF0005">Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author><author><name sortKey="Marks, Kristen M" sort="Marks, Kristen M" uniqKey="Marks K" first="Kristen M" last="Marks">Kristen M. Marks</name><affiliation wicri:level="2"><nlm:aff id="AF0001">Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">État de New York</region></placeName><wicri:cityArea>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York</wicri:cityArea></affiliation></author></analytic><series><title level="j">Open Forum Infectious Diseases</title><idno type="eISSN">2328-8957</idno><imprint><date when="2019">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Abstract</title><p>Determining the causative etiology of culture-negative endocarditis can be challenging. We performed next-generation sequencing of plasma microbial cell-free DNA to facilitate rapid diagnosis and genotyping of <italic>Coxiella burnetii</italic> in a patient with culture-negative endocarditis of a prosthetic pulmonary valve, enabling early targeted treatment prior to valve replacement surgery.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Tattevin, P" uniqKey="Tattevin P">P Tattevin</name></author><author><name sortKey="Watt, G" uniqKey="Watt G">G Watt</name></author><author><name sortKey="Revest, M" uniqKey="Revest M">M Revest</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blauwkamp, Ta" uniqKey="Blauwkamp T">TA Blauwkamp</name></author><author><name sortKey="Thair, S" uniqKey="Thair S">S Thair</name></author><author><name sortKey="Rosen, Mj" uniqKey="Rosen M">MJ Rosen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Burnham, P" uniqKey="Burnham P">P Burnham</name></author><author><name sortKey="Dadhania, D" uniqKey="Dadhania D">D Dadhania</name></author><author><name sortKey="Heyang, M" uniqKey="Heyang M">M Heyang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Vlaminck, I" uniqKey="De Vlaminck I">I De Vlaminck</name></author><author><name sortKey="Martin, L" uniqKey="Martin L">L Martin</name></author><author><name sortKey="Kertesz, M" uniqKey="Kertesz M">M Kertesz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Perkins, Km" uniqKey="Perkins K">KM Perkins</name></author><author><name sortKey="Lawsin, A" uniqKey="Lawsin A">A Lawsin</name></author><author><name sortKey="Hasan, Na" uniqKey="Hasan N">NA Hasan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nomura, J" uniqKey="Nomura J">J Nomura</name></author><author><name sortKey="Rieg, G" uniqKey="Rieg G">G Rieg</name></author><author><name sortKey="Bluestone, G" uniqKey="Bluestone G">G Bluestone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hornstra, Hm" uniqKey="Hornstra H">HM Hornstra</name></author><author><name sortKey="Priestley, Ra" uniqKey="Priestley R">RA Priestley</name></author><author><name sortKey="Georgia, Sm" uniqKey="Georgia S">SM Georgia</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Glazunova, O" uniqKey="Glazunova O">O Glazunova</name></author><author><name sortKey="Roux, V" uniqKey="Roux V">V Roux</name></author><author><name sortKey="Freylikman, O" uniqKey="Freylikman O">O Freylikman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kersh, Gj" uniqKey="Kersh G">GJ Kersh</name></author><author><name sortKey="Priestley, Ra" uniqKey="Priestley R">RA Priestley</name></author><author><name sortKey="Hornstra, Hm" uniqKey="Hornstra H">HM Hornstra</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Anderson, A" uniqKey="Anderson A">A Anderson</name></author><author><name sortKey="Bijlmer, H" uniqKey="Bijlmer H">H Bijlmer</name></author><author><name sortKey="Fournier, Pe" uniqKey="Fournier P">PE Fournier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reimer, Lg" uniqKey="Reimer L">LG Reimer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Madariaga, Mg" uniqKey="Madariaga M">MG Madariaga</name></author><author><name sortKey="Rezai, K" uniqKey="Rezai K">K Rezai</name></author><author><name sortKey="Trenholme, Gm" uniqKey="Trenholme G">GM Trenholme</name></author><author><name sortKey="Weinstein, Ra" uniqKey="Weinstein R">RA Weinstein</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="brief-report"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Open Forum Infect Dis</journal-id><journal-id journal-id-type="iso-abbrev">Open Forum Infect Dis</journal-id><journal-id journal-id-type="publisher-id">ofid</journal-id><journal-title-group><journal-title>Open Forum Infectious Diseases</journal-title></journal-title-group><issn pub-type="epub">2328-8957</issn><publisher><publisher-name>Oxford University Press</publisher-name><publisher-loc>US</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">31249846</article-id><article-id pub-id-type="pmc">6580995</article-id><article-id pub-id-type="doi">10.1093/ofid/ofz242</article-id><article-id pub-id-type="publisher-id">ofz242</article-id><article-categories><subj-group subj-group-type="heading"><subject>Brief Report</subject></subj-group></article-categories><title-group><article-title>Diagnosis and Genotyping of <italic>Coxiella burnetii</italic> Endocarditis in a Patient with Prosthetic Pulmonary Valve Replacement Using Next-Generation Sequencing of Plasma Microbial Cell-Free DNA</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Kondo</surname><given-names>Maiko</given-names></name><xref ref-type="aff" rid="AF0001">1</xref></contrib><contrib contrib-type="author"><name><surname>Dalai</surname><given-names>Sudeb C</given-names></name><xref ref-type="aff" rid="AF0002">2</xref><xref ref-type="aff" rid="AF0003">3</xref></contrib><contrib contrib-type="author"><name><surname>Venkatasubrahmanyam</surname><given-names>Shivkumar</given-names></name><xref ref-type="aff" rid="AF0002">2</xref></contrib><contrib contrib-type="author"><name><surname>Eisenberg</surname><given-names>Nell</given-names></name><xref ref-type="aff" rid="AF0004">4</xref></contrib><contrib contrib-type="author"><name><surname>Robinson</surname><given-names>Brian D</given-names></name><xref ref-type="aff" rid="AF0005">5</xref></contrib><contrib contrib-type="author"><name><surname>Westblade</surname><given-names>Lars F</given-names></name><xref ref-type="aff" rid="AF0001">1</xref><xref ref-type="aff" rid="AF0005">5</xref></contrib><contrib contrib-type="author"><name><surname>Marks</surname><given-names>Kristen M</given-names></name><xref ref-type="aff" rid="AF0001">1</xref><xref ref-type="corresp" rid="c1"></xref><pmc-comment>markskr@med.cornell.edu </pmc-comment>
</contrib></contrib-group><aff id="AF0001"><label>1</label>Division of Infectious Diseases, Department of Medicine, Weill Cornell Medicine, New York, New York</aff><aff id="AF0002"><label>2</label>Karius, Inc., Redwood City, California</aff><aff id="AF0003"><label>3</label>Division of Infectious Diseases, Stanford University Medical Center, Stanford, California</aff><aff id="AF0004"><label>4</label>Department of Medicine, Weill Cornell Medicine, New York, New York</aff><aff id="AF0005"><label>5</label>Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, New York</aff><author-notes><corresp id="c1">Correspondence: K. M. Marks, MD, Division of Infectious Diseases, Department of Medicine, 525 East 68th Street, F2437 Weill Cornell Medicine, New York, NY 10065. (<email>markskr@med.cornell.edu</email>).</corresp></author-notes><pub-date pub-type="collection"><month>6</month><year>2019</year></pub-date><pub-date pub-type="epub" iso-8601-date="2019-06-01"><day>01</day><month>6</month><year>2019</year></pub-date><pub-date pub-type="pmc-release"><day>01</day><month>6</month><year>2019</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>6</volume><issue>6</issue><elocation-id>ofz242</elocation-id><history><date date-type="received"><day>21</day><month>3</month><year>2019</year></date><date date-type="accepted"><day>30</day><month>5</month><year>2019</year></date></history><permissions><copyright-statement>© The Author(s) 2019. Published by Oxford University Press on behalf of Infectious Diseases Society of America.</copyright-statement><copyright-year>2019</copyright-year><license license-type="cc-by" xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><self-uri xlink:href="ofz242.pdf"></self-uri><abstract><title>Abstract</title><p>Determining the causative etiology of culture-negative endocarditis can be challenging. We performed next-generation sequencing of plasma microbial cell-free DNA to facilitate rapid diagnosis and genotyping of <italic>Coxiella burnetii</italic> in a patient with culture-negative endocarditis of a prosthetic pulmonary valve, enabling early targeted treatment prior to valve replacement surgery.</p></abstract><kwd-group><kwd><italic>Coxiella burnetii</italic></kwd><kwd>endocarditis</kwd><kwd>next-generation sequencing</kwd><kwd>plasma microbial cell-free DNA</kwd><kwd>Q fever</kwd></kwd-group><counts><page-count count="4"></page-count></counts></article-meta></front></pmc><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li><li>État de New York</li></region></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Kondo, Maiko" sort="Kondo, Maiko" uniqKey="Kondo M" first="Maiko" last="Kondo">Maiko Kondo</name></region><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. Dalai</name><name sortKey="Dalai, Sudeb C" sort="Dalai, Sudeb C" uniqKey="Dalai S" first="Sudeb C" last="Dalai">Sudeb C. Dalai</name><name sortKey="Eisenberg, Nell" sort="Eisenberg, Nell" uniqKey="Eisenberg N" first="Nell" last="Eisenberg">Nell Eisenberg</name><name sortKey="Marks, Kristen M" sort="Marks, Kristen M" uniqKey="Marks K" first="Kristen M" last="Marks">Kristen M. Marks</name><name sortKey="Robinson, Brian D" sort="Robinson, Brian D" uniqKey="Robinson B" first="Brian D" last="Robinson">Brian D. Robinson</name><name sortKey="Venkatasubrahmanyam, Shivkumar" sort="Venkatasubrahmanyam, Shivkumar" uniqKey="Venkatasubrahmanyam S" first="Shivkumar" last="Venkatasubrahmanyam">Shivkumar Venkatasubrahmanyam</name><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. Westblade</name><name sortKey="Westblade, Lars F" sort="Westblade, Lars F" uniqKey="Westblade L" first="Lars F" last="Westblade">Lars F. Westblade</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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