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Identification of non-linear influences on the seasonal ozone dose–response of sensitive and resistant clover clones using artificial neural networks

Identifieur interne : 000998 ( Istex/Corpus ); précédent : 000997; suivant : 000999

Identification of non-linear influences on the seasonal ozone dose–response of sensitive and resistant clover clones using artificial neural networks

Auteurs : G. R Ball ; D. Palmer-Brown ; J. Fuhrer ; L. Sk Rby ; B. S Gimeno ; G. Mills

Source :

RBID : ISTEX:F582E4C071EA7ACB5B971367009B0D03CC26EACD

English descriptors

Abstract

Ozone is a commonly occurring pollutant that has a large impact on the yield of agricultural crops. The dose–response of crops in the field is complex, with influences from numerous biotic and abiotic factors, including microclimatic variables. This paper presents results of a number of analysis methods of artificial neural network (ANN) models, developed on biomonitoring data from 12 countries, to identify the importance of interacting influences on the biomass response of sensitive (NC-S) and resistant (NC-R) clones of white clover (Trifolium repens L. cv. Regal). These methods of analysis were also used to identify the importance of influences on a subset of the data. Empirical equations were extracted from the ANN model with the best performance and these were analysed to determine their performance and to indicate the nature of microclimatic influences. Analysis indicated that combinations of VPD and the number of raindays were strong influences on the ozone dose–response and that temperature and the number of raindays had a secondary influence on the NC-S/NC-R biomass ratio irrespective of the ozone dose. Analysis of derived empirical equations indicated they compared well with the ANN model and that only a small loss in accuracy occurred.

Url:
DOI: 10.1016/S0304-3800(00)00234-9

Links to Exploration step

ISTEX:F582E4C071EA7ACB5B971367009B0D03CC26EACD

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<note type="content">Fig. 1: Actual versus predicted NC-S/NC-R biomass ratio values for model 1 (the optimised ANN model using all data) showing the relationship between actual and predicted values.</note>
<note type="content">Fig. 2: Graphs of model 1 predictions of the NC-S/NC-R biomass ratio response to AOT40 at a range of: (A) Tmean values, (B) VPD values and (C) Raindays values. Three-dimensional graphs have had their viewpoint altered for clarity of presentation. The shaded region indicates area where values of AOT40 and Tmean/VPD occurred. For the two-dimensional graph the number of raindays is indicated as follows 18 (+), 24 (◊), 30 (■), 36 (○), 42 (•), 48 (X).</note>
<note type="content">Fig. 3: Actual versus predicted NC-S/NC-R biomass ratio values for the equation extracted from model 1 showing the relationship between actual and predicted value.Fig. 1.</note>
<note type="content">Table 1: Location of ICP-crops sites and summary values of the environmental variables used in the modela</note>
<note type="content">Table 2: Correlation matrix for the database used to develop the model</note>
<note type="content">Table 3: Performance of models for training and test data, trained with a number of permutations of inputs and indicating the number of hidden nodes required for optimum performance and the importance of the inputs used relative to the model using all inputs (selected combinations presented)</note>
<note type="content">Table 4: Results of retraining the ANN model without the residuals from the earlier ANN model using different permutations of inputs</note>
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</ce:author>
<ce:author>
<ce:given-name>D</ce:given-name>
<ce:surname>Palmer-Brown</ce:surname>
<ce:cross-ref refid="AFF1">
<ce:sup>a</ce:sup>
</ce:cross-ref>
</ce:author>
<ce:author>
<ce:given-name>J</ce:given-name>
<ce:surname>Fuhrer</ce:surname>
<ce:cross-ref refid="AFF2">
<ce:sup>b</ce:sup>
</ce:cross-ref>
</ce:author>
<ce:author>
<ce:given-name>L</ce:given-name>
<ce:surname>Skärby</ce:surname>
<ce:cross-ref refid="AFF3">
<ce:sup>c</ce:sup>
</ce:cross-ref>
</ce:author>
<ce:author>
<ce:given-name>B.S</ce:given-name>
<ce:surname>Gimeno</ce:surname>
<ce:cross-ref refid="AFF4">
<ce:sup>d</ce:sup>
</ce:cross-ref>
</ce:author>
<ce:author>
<ce:given-name>G</ce:given-name>
<ce:surname>Mills</ce:surname>
<ce:cross-ref refid="AFF5">
<ce:sup>e</ce:sup>
</ce:cross-ref>
</ce:author>
<ce:affiliation id="AFF1">
<ce:label>a</ce:label>
<ce:textfn>Department of Computing, Faculty of Engineering and Computing, Nottingham Trent University, Burton Street, Nottingham NG1 4BU, UK</ce:textfn>
</ce:affiliation>
<ce:affiliation id="AFF2">
<ce:label>b</ce:label>
<ce:textfn>Institute for Environmental Protection and Agriculture, (IUL) Liebfeld, CH-3003 Bern, Switzerland</ce:textfn>
</ce:affiliation>
<ce:affiliation id="AFF3">
<ce:label>c</ce:label>
<ce:textfn>IVL, Box 47086, S-40258, Göteborg, Sweden</ce:textfn>
</ce:affiliation>
<ce:affiliation id="AFF4">
<ce:label>d</ce:label>
<ce:textfn>CIEMAT-DIAE 3B, Avda. Complutense 22, Madrid 28040, Spain</ce:textfn>
</ce:affiliation>
<ce:affiliation id="AFF5">
<ce:label>e</ce:label>
<ce:textfn>Bangor Research Unit, Institute of Terrestrial Ecology, Deiniol Road, Bangor, Gwynedd LL57 2UP, UK</ce:textfn>
</ce:affiliation>
<ce:correspondence id="CORR1">
<ce:label>*</ce:label>
<ce:text>Corresponding author. Tel.: +44-115-9418418; fax: +44-115-9486518</ce:text>
</ce:correspondence>
</ce:author-group>
<ce:date-received day="3" month="12" year="1998"></ce:date-received>
<ce:date-revised day="11" month="8" year="1999"></ce:date-revised>
<ce:date-accepted day="1" month="2" year="2000"></ce:date-accepted>
<ce:abstract>
<ce:section-title>Abstract</ce:section-title>
<ce:abstract-sec>
<ce:simple-para>Ozone is a commonly occurring pollutant that has a large impact on the yield of agricultural crops. The dose–response of crops in the field is complex, with influences from numerous biotic and abiotic factors, including microclimatic variables. This paper presents results of a number of analysis methods of artificial neural network (ANN) models, developed on biomonitoring data from 12 countries, to identify the importance of interacting influences on the biomass response of sensitive (NC-S) and resistant (NC-R) clones of white clover (
<ce:italic>Trifolium repens</ce:italic>
L. cv. Regal). These methods of analysis were also used to identify the importance of influences on a subset of the data. Empirical equations were extracted from the ANN model with the best performance and these were analysed to determine their performance and to indicate the nature of microclimatic influences. Analysis indicated that combinations of VPD and the number of raindays were strong influences on the ozone dose–response and that temperature and the number of raindays had a secondary influence on the NC-S/NC-R biomass ratio irrespective of the ozone dose. Analysis of derived empirical equations indicated they compared well with the ANN model and that only a small loss in accuracy occurred.</ce:simple-para>
</ce:abstract-sec>
</ce:abstract>
<ce:keywords class="keyword">
<ce:section-title>Keywords</ce:section-title>
<ce:keyword>
<ce:text>Artificial neural networks</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Equation extraction</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Ozone</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>AOT40</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Biomass dose–response</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Clover clones</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Biomonitoring</ce:text>
</ce:keyword>
<ce:keyword>
<ce:text>Climatic factors</ce:text>
</ce:keyword>
</ce:keywords>
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<title>Identification of non-linear influences on the seasonal ozone dose–response of sensitive and resistant clover clones using artificial neural networks</title>
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<affiliation>E-mail: graham.balls@ntu.ac.uk</affiliation>
<affiliation>Department of Computing, Faculty of Engineering and Computing, Nottingham Trent University, Burton Street, Nottingham NG1 4BU, UK</affiliation>
<description>Corresponding author. Tel.: +44-115-9418418; fax: +44-115-9486518</description>
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<affiliation>IVL, Box 47086, S-40258, Göteborg, Sweden</affiliation>
<role>
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<name type="personal">
<namePart type="given">B.S</namePart>
<namePart type="family">Gimeno</namePart>
<affiliation>CIEMAT-DIAE 3B, Avda. Complutense 22, Madrid 28040, Spain</affiliation>
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<name type="personal">
<namePart type="given">G</namePart>
<namePart type="family">Mills</namePart>
<affiliation>Bangor Research Unit, Institute of Terrestrial Ecology, Deiniol Road, Bangor, Gwynedd LL57 2UP, UK</affiliation>
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<abstract lang="en">Ozone is a commonly occurring pollutant that has a large impact on the yield of agricultural crops. The dose–response of crops in the field is complex, with influences from numerous biotic and abiotic factors, including microclimatic variables. This paper presents results of a number of analysis methods of artificial neural network (ANN) models, developed on biomonitoring data from 12 countries, to identify the importance of interacting influences on the biomass response of sensitive (NC-S) and resistant (NC-R) clones of white clover (Trifolium repens L. cv. Regal). These methods of analysis were also used to identify the importance of influences on a subset of the data. Empirical equations were extracted from the ANN model with the best performance and these were analysed to determine their performance and to indicate the nature of microclimatic influences. Analysis indicated that combinations of VPD and the number of raindays were strong influences on the ozone dose–response and that temperature and the number of raindays had a secondary influence on the NC-S/NC-R biomass ratio irrespective of the ozone dose. Analysis of derived empirical equations indicated they compared well with the ANN model and that only a small loss in accuracy occurred.</abstract>
<note type="content">Fig. 1: Actual versus predicted NC-S/NC-R biomass ratio values for model 1 (the optimised ANN model using all data) showing the relationship between actual and predicted values.</note>
<note type="content">Fig. 2: Graphs of model 1 predictions of the NC-S/NC-R biomass ratio response to AOT40 at a range of: (A) Tmean values, (B) VPD values and (C) Raindays values. Three-dimensional graphs have had their viewpoint altered for clarity of presentation. The shaded region indicates area where values of AOT40 and Tmean/VPD occurred. For the two-dimensional graph the number of raindays is indicated as follows 18 (+), 24 (◊), 30 (■), 36 (○), 42 (•), 48 (X).</note>
<note type="content">Fig. 3: Actual versus predicted NC-S/NC-R biomass ratio values for the equation extracted from model 1 showing the relationship between actual and predicted value.Fig. 1.</note>
<note type="content">Table 1: Location of ICP-crops sites and summary values of the environmental variables used in the modela</note>
<note type="content">Table 2: Correlation matrix for the database used to develop the model</note>
<note type="content">Table 3: Performance of models for training and test data, trained with a number of permutations of inputs and indicating the number of hidden nodes required for optimum performance and the importance of the inputs used relative to the model using all inputs (selected combinations presented)</note>
<note type="content">Table 4: Results of retraining the ANN model without the residuals from the earlier ANN model using different permutations of inputs</note>
<subject lang="en">
<genre>Keywords</genre>
<topic>Artificial neural networks</topic>
<topic>Equation extraction</topic>
<topic>Ozone</topic>
<topic>AOT40</topic>
<topic>Biomass dose–response</topic>
<topic>Clover clones</topic>
<topic>Biomonitoring</topic>
<topic>Climatic factors</topic>
</subject>
<relatedItem type="host">
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<title>Ecological Modelling</title>
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<title>ECOMOD</title>
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<originInfo>
<dateIssued encoding="w3cdtf">20000530</dateIssued>
</originInfo>
<identifier type="ISSN">0304-3800</identifier>
<identifier type="PII">S0304-3800(00)X0098-1</identifier>
<part>
<date>20000530</date>
<detail type="volume">
<number>129</number>
<caption>vol.</caption>
</detail>
<detail type="issue">
<number>2–3</number>
<caption>no.</caption>
</detail>
<extent unit="issue pages">
<start>113</start>
<end>312</end>
</extent>
<extent unit="pages">
<start>153</start>
<end>168</end>
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<identifier type="DOI">10.1016/S0304-3800(00)00234-9</identifier>
<identifier type="PII">S0304-3800(00)00234-9</identifier>
<accessCondition type="use and reproduction" contentType="copyright">©2000 Elsevier Science B.V.</accessCondition>
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