Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein.
Identifieur interne : 000071 ( Main/Exploration ); précédent : 000070; suivant : 000072Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein.
Auteurs : A G Blouin [Nouvelle-Zélande] ; R. Biccheri [Italie] ; M E Khalifa [Nouvelle-Zélande, Égypte] ; M N Pearson [Nouvelle-Zélande] ; C. Poggi Pollini [Italie] ; C. Hamiaux [Nouvelle-Zélande] ; D. Cohen [Nouvelle-Zélande] ; C. Ratti [Italie]Source :
- Archives of virology [ 1432-8798 ] ; 2018.
Descripteurs français
- KwdFr :
- Actinidia (virologie), Closteroviridae (génétique), Closteroviridae (isolement et purification), Conformation des protéines (MeSH), Génome viral (MeSH), Italie (MeSH), Modèles moléculaires (MeSH), Phylogenèse (MeSH), Protéines virales (génétique), Protéines virales (métabolisme), Régulation de l'expression des gènes viraux (MeSH).
- MESH :
- génétique : Closteroviridae, Protéines virales.
- isolement et purification : Closteroviridae.
- métabolisme : Protéines virales.
- virologie : Actinidia.
- Conformation des protéines, Génome viral, Italie, Modèles moléculaires, Phylogenèse, Régulation de l'expression des gènes viraux.
English descriptors
- KwdEn :
- Actinidia (virology), Closteroviridae (genetics), Closteroviridae (isolation & purification), Gene Expression Regulation, Viral (MeSH), Genome, Viral (MeSH), Italy (MeSH), Models, Molecular (MeSH), Phylogeny (MeSH), Protein Conformation (MeSH), Viral Proteins (genetics), Viral Proteins (metabolism).
- MESH :
- chemical , genetics : Viral Proteins.
- genetics : Closteroviridae.
- isolation & purification : Closteroviridae.
- chemical , metabolism : Viral Proteins.
- virology : Actinidia.
- Gene Expression Regulation, Viral, Genome, Viral, Italy, Models, Molecular, Phylogeny, Protein Conformation.
Abstract
A new member of the family Closteroviridae was detected in Actinidia chinensis grown in Italy, using next generation sequencing of double-stranded RNA. The virus isolate, named Actinidia virus 1 (AcV-1) has a genome of 18,848 nts in length, a structure similar to the unclassified persimmon virus B (PeVB) and contains 12 open reading frames (ORFs) greater than 6 KDa, one carrying two papain-like leader proteases, a methyltransferase, a helicase and an RNA-dependent RNA polymerase domain. Additional ORFs code for homologs of heat shock protein 70, heat shock protein 90 and a coat protein. Curiously, AcV-1 and PeVB genomes code for a thaumatin-like protein, a peculiarity unreported for other viruses. In phylogenetic analyses both viruses group in a distinct clade evolutionarily related to closteroviruses. The final taxonomic position of AcV-1 within the family Closteroviridae is yet to be clarified.
DOI: 10.1007/s00705-017-3610-z
PubMed: 29043497
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Biccheri</name><affiliation wicri:level="4"><nlm:affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DipSA-Patologia Vegetale, Università di Bologna, Viale G. 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Poggi Pollini</name><affiliation wicri:level="4"><nlm:affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna</wicri:regionArea><orgName type="university">Université de Bologne</orgName><placeName><settlement type="city">Bologne</settlement><region nuts="2" type="region">Émilie-Romagne</region></placeName></affiliation></author><author><name sortKey="Hamiaux, C" sort="Hamiaux, C" uniqKey="Hamiaux C" first="C" last="Hamiaux">C. Hamiaux</name><affiliation wicri:level="1"><nlm:affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Cohen, D" sort="Cohen, D" uniqKey="Cohen D" first="D" last="Cohen">D. Cohen</name><affiliation wicri:level="1"><nlm:affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</nlm:affiliation><country xml:lang="fr">Nouvelle-Zélande</country><wicri:regionArea>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland</wicri:regionArea><wicri:noRegion>Auckland</wicri:noRegion></affiliation></author><author><name sortKey="Ratti, C" sort="Ratti, C" uniqKey="Ratti C" first="C" last="Ratti">C. Ratti</name><affiliation wicri:level="4"><nlm:affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy. claudio.ratti@unibo.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna</wicri:regionArea><orgName type="university">Université de Bologne</orgName><placeName><settlement type="city">Bologne</settlement><region nuts="2" type="region">Émilie-Romagne</region></placeName></affiliation></author></analytic><series><title level="j">Archives of virology</title><idno type="eISSN">1432-8798</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Actinidia (virology)</term><term>Closteroviridae (genetics)</term><term>Closteroviridae (isolation & purification)</term><term>Gene Expression Regulation, Viral (MeSH)</term><term>Genome, Viral (MeSH)</term><term>Italy (MeSH)</term><term>Models, Molecular (MeSH)</term><term>Phylogeny (MeSH)</term><term>Protein Conformation (MeSH)</term><term>Viral Proteins (genetics)</term><term>Viral Proteins (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Actinidia (virologie)</term><term>Closteroviridae (génétique)</term><term>Closteroviridae (isolement et purification)</term><term>Conformation des protéines (MeSH)</term><term>Génome viral (MeSH)</term><term>Italie (MeSH)</term><term>Modèles moléculaires (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Protéines virales (génétique)</term><term>Protéines virales (métabolisme)</term><term>Régulation de l'expression des gènes viraux (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Closteroviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Closteroviridae</term><term>Protéines virales</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Closteroviridae</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Closteroviridae</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines virales</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Actinidia</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Actinidia</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Regulation, Viral</term><term>Genome, Viral</term><term>Italy</term><term>Models, Molecular</term><term>Phylogeny</term><term>Protein Conformation</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Conformation des protéines</term><term>Génome viral</term><term>Italie</term><term>Modèles moléculaires</term><term>Phylogenèse</term><term>Régulation de l'expression des gènes viraux</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A new member of the family Closteroviridae was detected in Actinidia chinensis grown in Italy, using next generation sequencing of double-stranded RNA. The virus isolate, named Actinidia virus 1 (AcV-1) has a genome of 18,848 nts in length, a structure similar to the unclassified persimmon virus B (PeVB) and contains 12 open reading frames (ORFs) greater than 6 KDa, one carrying two papain-like leader proteases, a methyltransferase, a helicase and an RNA-dependent RNA polymerase domain. Additional ORFs code for homologs of heat shock protein 70, heat shock protein 90 and a coat protein. Curiously, AcV-1 and PeVB genomes code for a thaumatin-like protein, a peculiarity unreported for other viruses. In phylogenetic analyses both viruses group in a distinct clade evolutionarily related to closteroviruses. The final taxonomic position of AcV-1 within the family Closteroviridae is yet to be clarified.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29043497</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>07</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-8798</ISSN><JournalIssue CitedMedium="Internet"><Volume>163</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch Virol</ISOAbbreviation></Journal><ArticleTitle>Characterization of Actinidia virus 1, a new member of the family Closteroviridae encoding a thaumatin-like protein.</ArticleTitle><Pagination><MedlinePgn>229-234</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00705-017-3610-z</ELocationID><Abstract><AbstractText>A new member of the family Closteroviridae was detected in Actinidia chinensis grown in Italy, using next generation sequencing of double-stranded RNA. The virus isolate, named Actinidia virus 1 (AcV-1) has a genome of 18,848 nts in length, a structure similar to the unclassified persimmon virus B (PeVB) and contains 12 open reading frames (ORFs) greater than 6 KDa, one carrying two papain-like leader proteases, a methyltransferase, a helicase and an RNA-dependent RNA polymerase domain. Additional ORFs code for homologs of heat shock protein 70, heat shock protein 90 and a coat protein. Curiously, AcV-1 and PeVB genomes code for a thaumatin-like protein, a peculiarity unreported for other viruses. In phylogenetic analyses both viruses group in a distinct clade evolutionarily related to closteroviruses. The final taxonomic position of AcV-1 within the family Closteroviridae is yet to be clarified.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Blouin</LastName><ForeName>A G</ForeName><Initials>AG</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>School of Biological Sciences, The University of Auckland, Private Bag, 92019, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Biccheri</LastName><ForeName>R</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Khalifa</LastName><ForeName>M E</ForeName><Initials>ME</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Faculty of Science, Damietta University, Damietta, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pearson</LastName><ForeName>M N</ForeName><Initials>MN</Initials><AffiliationInfo><Affiliation>School of Biological Sciences, The University of Auckland, Private Bag, 92019, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Poggi Pollini</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hamiaux</LastName><ForeName>C</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cohen</LastName><ForeName>D</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>The New Zealand Institute for Plant & Food Research Limited, Private Bag, 92169, Auckland, New Zealand.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ratti</LastName><ForeName>C</ForeName><Initials>C</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-5640-2143</Identifier><AffiliationInfo><Affiliation>DipSA-Patologia Vegetale, Università di Bologna, Viale G. Fanin, 40, 40127, Bologna, Italy. claudio.ratti@unibo.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>Summer Scholarship Programme</GrantID><Agency>University of Auckland</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>10</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>Austria</Country><MedlineTA>Arch Virol</MedlineTA><NlmUniqueID>7506870</NlmUniqueID><ISSNLinking>0304-8608</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014764">Viral Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D029042" MajorTopicYN="N">Actinidia</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029381" MajorTopicYN="N">Closteroviridae</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015967" MajorTopicYN="N">Gene Expression Regulation, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007558" MajorTopicYN="N">Italy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008958" MajorTopicYN="N">Models, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011487" MajorTopicYN="N">Protein Conformation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>03</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>09</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>10</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>10</Month><Day>19</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">29043497</ArticleId><ArticleId IdType="doi">10.1007/s00705-017-3610-z</ArticleId><ArticleId IdType="pii">10.1007/s00705-017-3610-z</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Italie</li><li>Nouvelle-Zélande</li><li>Égypte</li></country><region><li>Émilie-Romagne</li></region><settlement><li>Bologne</li></settlement><orgName><li>Université de Bologne</li></orgName></list><tree><country name="Nouvelle-Zélande"><noRegion><name sortKey="Blouin, A G" sort="Blouin, A G" uniqKey="Blouin A" first="A G" last="Blouin">A G Blouin</name></noRegion><name sortKey="Blouin, A G" sort="Blouin, A G" uniqKey="Blouin A" first="A G" last="Blouin">A G Blouin</name><name sortKey="Cohen, D" sort="Cohen, D" uniqKey="Cohen D" first="D" last="Cohen">D. Cohen</name><name sortKey="Hamiaux, C" sort="Hamiaux, C" uniqKey="Hamiaux C" first="C" last="Hamiaux">C. Hamiaux</name><name sortKey="Khalifa, M E" sort="Khalifa, M E" uniqKey="Khalifa M" first="M E" last="Khalifa">M E Khalifa</name><name sortKey="Pearson, M N" sort="Pearson, M N" uniqKey="Pearson M" first="M N" last="Pearson">M N Pearson</name></country><country name="Italie"><region name="Émilie-Romagne"><name sortKey="Biccheri, R" sort="Biccheri, R" uniqKey="Biccheri R" first="R" last="Biccheri">R. Biccheri</name></region><name sortKey="Poggi Pollini, C" sort="Poggi Pollini, C" uniqKey="Poggi Pollini C" first="C" last="Poggi Pollini">C. Poggi Pollini</name><name sortKey="Ratti, C" sort="Ratti, C" uniqKey="Ratti C" first="C" last="Ratti">C. Ratti</name></country><country name="Égypte"><noRegion><name sortKey="Khalifa, M E" sort="Khalifa, M E" uniqKey="Khalifa M" first="M E" last="Khalifa">M E Khalifa</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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