Genome-Wide Classification and Evolutionary and Expression Analyses of Citrus MYB Transcription Factor Families in Sweet Orange
Identifieur interne : 000A65 ( Main/Merge ); précédent : 000A64; suivant : 000A66Genome-Wide Classification and Evolutionary and Expression Analyses of Citrus MYB Transcription Factor Families in Sweet Orange
Auteurs : Xiao-Jin Hou ; Si-Bei Li ; Sheng-Rui Liu ; Chun-Gen Hu ; Jin-Zhi ZhangSource :
- PLoS ONE [ 1932-6203 ] ; 2014.
English descriptors
- KwdEn :
- Citrus sinensis (genetics), Citrus sinensis (metabolism), Gene Expression Regulation, Plant (physiology), Genome-Wide Association Study, Multigene Family (physiology), Plant Proteins (biosynthesis), Plant Proteins (classification), Plant Proteins (genetics), Transcription Factors (biosynthesis), Transcription Factors (classification), Transcription Factors (genetics).
- MESH :
- chemical , biosynthesis : Plant Proteins, Transcription Factors.
- chemical , classification : Plant Proteins, Transcription Factors.
- genetics : Citrus sinensis, Plant Proteins, Transcription Factors.
- metabolism : Citrus sinensis.
- physiology : Gene Expression Regulation, Plant, Multigene Family.
- Genome-Wide Association Study.
Abstract
Url:
DOI: 10.1371/journal.pone.0112375
PubMed: 25375352
PubMed Central: 4223058
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Classification and Evolutionary and Expression Analyses of Citrus <italic>MYB</italic> Transcription Factor Families in Sweet Orange</title><author><name sortKey="Hou, Xiao Jin" sort="Hou, Xiao Jin" uniqKey="Hou X" first="Xiao-Jin" last="Hou">Xiao-Jin Hou</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Si Bei" sort="Li, Si Bei" uniqKey="Li S" first="Si-Bei" last="Li">Si-Bei Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Liu, Sheng Rui" sort="Liu, Sheng Rui" uniqKey="Liu S" first="Sheng-Rui" last="Liu">Sheng-Rui Liu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25375352</idno><idno type="pmc">4223058</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223058</idno><idno type="RBID">PMC:4223058</idno><idno type="doi">10.1371/journal.pone.0112375</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000217</idno><idno type="wicri:Area/Pmc/Curation">000217</idno><idno type="wicri:Area/Pmc/Checkpoint">000807</idno><idno type="wicri:source">PubMed</idno><idno type="wicri:Area/PubMed/Corpus">000275</idno><idno type="wicri:Area/PubMed/Curation">000275</idno><idno type="wicri:Area/PubMed/Checkpoint">000275</idno><idno type="wicri:Area/Ncbi/Merge">001894</idno><idno type="wicri:Area/Ncbi/Curation">001894</idno><idno type="wicri:Area/Ncbi/Checkpoint">001894</idno><idno type="wicri:Area/Main/Merge">000A65</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Classification and Evolutionary and Expression Analyses of Citrus <italic>MYB</italic> Transcription Factor Families in Sweet Orange</title><author><name sortKey="Hou, Xiao Jin" sort="Hou, Xiao Jin" uniqKey="Hou X" first="Xiao-Jin" last="Hou">Xiao-Jin Hou</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Si Bei" sort="Li, Si Bei" uniqKey="Li S" first="Si-Bei" last="Li">Si-Bei Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Liu, Sheng Rui" sort="Liu, Sheng Rui" uniqKey="Liu S" first="Sheng-Rui" last="Liu">Sheng-Rui Liu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Hu, Chun Gen" sort="Hu, Chun Gen" uniqKey="Hu C" first="Chun-Gen" last="Hu">Chun-Gen Hu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Jin Zhi" sort="Zhang, Jin Zhi" uniqKey="Zhang J" first="Jin-Zhi" last="Zhang">Jin-Zhi Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>Gene Expression Regulation, Plant (physiology)</term><term>Genome-Wide Association Study</term><term>Multigene Family (physiology)</term><term>Plant Proteins (biosynthesis)</term><term>Plant Proteins (classification)</term><term>Plant Proteins (genetics)</term><term>Transcription Factors (biosynthesis)</term><term>Transcription Factors (classification)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="biosynthesis" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term><term>Plant Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Multigene Family</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genome-Wide Association Study</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>MYB</italic> family genes are widely distributed in plants and comprise one of the largest transcription factors involved in various developmental processes and defense responses of plants. To date, few <italic>MYB</italic> genes and little expression profiling have been reported for citrus. Here, we describe and classify 177 members of the sweet orange <italic>MYB</italic> gene (<italic>CsMYB</italic>) family in terms of their genomic gene structures and similarity to their putative <italic>Arabidopsis</italic> orthologs. According to these analyses, these <italic>CsMYBs</italic> were categorized into four groups (4R-MYB, 3R-MYB, 2R-MYB and 1R-MYB). Gene structure analysis revealed that 1R-MYB genes possess relatively more introns as compared with 2R-MYB genes. Investigation of their chromosomal localizations revealed that these <italic>CsMYBs</italic> are distributed across nine chromosomes. Sweet orange includes a relatively small number of <italic>MYB</italic> genes compared with the 198 members in <italic>Arabidopsis</italic>, presumably due to a paralog reduction related to repetitive sequence insertion into promoter and non-coding transcribed region of the genes. Comparative studies of <italic>CsMYBs</italic> and <italic>Arabidopsis</italic> showed that <italic>CsMYBs</italic> had fewer gene duplication events. Expression analysis revealed that the <italic>MYB</italic> gene family has a wide expression profile in sweet orange development and plays important roles in development and stress responses. In addition, 337 new putative microsatellites with flanking sequences sufficient for primer design were also identified from the 177 <italic>CsMYBs</italic>. These results provide a useful reference for the selection of candidate <italic>MYB</italic> genes for cloning and further functional analysis forcitrus.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Feller, A" uniqKey="Feller A">A Feller</name></author><author><name sortKey="Machemer, K" uniqKey="Machemer K">K Machemer</name></author><author><name sortKey="Braun, El" uniqKey="Braun E">EL Braun</name></author><author><name sortKey="Grotewold, E" uniqKey="Grotewold E">E Grotewold</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Du, H" uniqKey="Du H">H Du</name></author><author><name sortKey="Zhang, L" uniqKey="Zhang L">L Zhang</name></author><author><name sortKey="Liu, L" uniqKey="Liu L">L Liu</name></author><author><name sortKey="Tang, X F" uniqKey="Tang X">X-F Tang</name></author><author><name sortKey="Yang, W J" uniqKey="Yang W">W-J 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