Genome-Wide Identification and Characterization of RBR Ubiquitin Ligase Genes in Soybean
Identifieur interne : 000A64 ( Main/Merge ); précédent : 000A63; suivant : 000A65Genome-Wide Identification and Characterization of RBR Ubiquitin Ligase Genes in Soybean
Auteurs : Pei Chen ; Xiaolian Zhang ; Tuanjie Zhao ; Yan Li ; Junyi GaiSource :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
RBR (
Url:
DOI: 10.1371/journal.pone.0087282
PubMed: 24489889
PubMed Central: 3904995
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide Identification and Characterization of RBR Ubiquitin Ligase Genes in Soybean</title><author><name sortKey="Chen, Pei" sort="Chen, Pei" uniqKey="Chen P" first="Pei" last="Chen">Pei Chen</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Xiaolian" sort="Zhang, Xiaolian" uniqKey="Zhang X" first="Xiaolian" last="Zhang">Xiaolian Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhao, Tuanjie" sort="Zhao, Tuanjie" uniqKey="Zhao T" first="Tuanjie" last="Zhao">Tuanjie Zhao</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gai, Junyi" sort="Gai, Junyi" uniqKey="Gai J" first="Junyi" last="Gai">Junyi Gai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24489889</idno><idno type="pmc">3904995</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904995</idno><idno type="RBID">PMC:3904995</idno><idno type="doi">10.1371/journal.pone.0087282</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">001185</idno><idno type="wicri:Area/Pmc/Curation">001184</idno><idno type="wicri:Area/Pmc/Checkpoint">000806</idno><idno type="wicri:Area/Ncbi/Merge">001576</idno><idno type="wicri:Area/Ncbi/Curation">001576</idno><idno type="wicri:Area/Ncbi/Checkpoint">001576</idno><idno type="wicri:Area/Main/Merge">000A64</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genome-Wide Identification and Characterization of RBR Ubiquitin Ligase Genes in Soybean</title><author><name sortKey="Chen, Pei" sort="Chen, Pei" uniqKey="Chen P" first="Pei" last="Chen">Pei Chen</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhang, Xiaolian" sort="Zhang, Xiaolian" uniqKey="Zhang X" first="Xiaolian" last="Zhang">Xiaolian Zhang</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Zhao, Tuanjie" sort="Zhao, Tuanjie" uniqKey="Zhao T" first="Tuanjie" last="Zhao">Tuanjie Zhao</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Gai, Junyi" sort="Gai, Junyi" uniqKey="Gai J" first="Junyi" last="Gai">Junyi Gai</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>RBR (<underline>R</underline>ING1-I<underline>B</underline>R-<underline>R</underline>ING2) proteins play an important role in protein ubiquitination and are involved in many cellular processes. Recent studies showed plant RBR genes were induced by abiotic and biotic stresses. However, detailed studies on RBR genes in the important oil crop, soybean (<italic>Glycine max</italic> (L.) Merr.), is still lacking. Here we performed a genome-wide search and identified 24 RBR domain-containing genes from the soybean genome sequence and cloned 11 of them. Most soybean RBR proteins contain a highly conserved RBR supra-domain. Phylogenetic analyses indicated all 24 soybean RBR proteins are most related to the RBR proteins from <italic>Phaseolus vulgaris</italic>, and could be classified into seven groups including Ariadne A, Ariadne B, ARA54, Plant IIA, Plant IIB, Plant IIC, and Helicase. Tandem duplication and block duplication were found among the Ariadne B and Plant IIC group of soybean RBR genes. Despite the conserved RBR supra-domain, there are extensive variations in the additional protein motifs and exon-intron structures between different groups, which indicate they might have diverse functions. Most soybean RBR proteins are predicted to localize in nucleus, and four of them were experimentally confirmed by GFP fusion proteins. Soybean RBR genes are broadly expressed in many tissue types with a little more abundant in the roots and flowers than leaves, stems, and seeds. The expression of <italic>GmRTRTP3</italic> (Plant IIB) and <italic>GmRTRTP5</italic> (Plant IIC) are induced by NaCl treatment, which suggests these RBR genes might be involved in soybean response to abiotic stresses.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Okiyoneda, T" uniqKey="Okiyoneda T">T Okiyoneda</name></author><author><name sortKey="Apaja, Pm" uniqKey="Apaja P">PM Apaja</name></author><author><name sortKey="Lukacs, Gl" uniqKey="Lukacs G">GL Lukacs</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lin, Ss" uniqKey="Lin S">SS Lin</name></author><author><name sortKey="Martin, R" uniqKey="Martin R">R Martin</name></author><author><name sortKey="Mongrand, S" uniqKey="Mongrand S">S Mongrand</name></author><author><name sortKey="Vandenabeele, S" uniqKey="Vandenabeele S">S Vandenabeele</name></author><author><name sortKey="Chen, Kc" uniqKey="Chen K">KC 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