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The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India

Identifieur interne : 001180 ( Main/Exploration ); précédent : 001179; suivant : 001181

The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India

Auteurs : Prabha K ; V. K. Baranwal

Source :

Journal of Virology [ 0022-538X ] ; 2012.

RBID : PMC:3486449

Descripteurs français

Wicri :
- geographic : Inde.

English descriptors

KwdEn :
- Citrus sinensis (virology), Flexiviridae (genetics), Genome, Viral, India, Molecular Sequence Data, Open Reading Frames, Plant Diseases (virology), RNA, Viral, Sequence Analysis, DNA.
MESH :
- chemical : RNA, Viral.
- geographic : India.
- genetics : Flexiviridae.
- virology : Citrus sinensis, Plant Diseases.
- Genome, Viral, Molecular Sequence Data, Open Reading Frames, Sequence Analysis, DNA.

Abstract

Whole-genome sequencing of an isolate of Mandarivirus infecting the sweet orange [Citrus sinensis (L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of Indian citrus ringspot virus (ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (Citrus reticulate Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486449

DOI: 10.1128/JVI.02084-12
PubMed: 23087111
PubMed Central: 3486449

Affiliations:

Le document en format XML

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<term>Molecular Sequence Data</term>
<term>Open Reading Frames</term>
<term>Plant Diseases (virology)</term>
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<term>Sequence Analysis, DNA</term>
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<front><div type="abstract" xml:lang="en"><p>Whole-genome sequencing of an isolate of <named-content content-type="genus-species">Mandarivirus</named-content>
 infecting the sweet orange [<named-content content-type="genus-species">Citrus sinensis</named-content>
 (L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of <named-content content-type="genus-species">Indian citrus ringspot virus</named-content>
 (ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (<named-content content-type="genus-species">Citrus reticulate</named-content>
 Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.</p>
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The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India

The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

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