The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India
Identifieur interne : 000A01 ( Pmc/Curation ); précédent : 000A00; suivant : 000A02The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India
Auteurs : Prabha K ; V. K. BaranwalSource :
- Journal of Virology [ 0022-538X ] ; 2012.
Abstract
Whole-genome sequencing of an isolate of
Url:
DOI: 10.1128/JVI.02084-12
PubMed: 23087111
PubMed Central: 3486449
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<author><name sortKey="K, Prabha" sort="K, Prabha" uniqKey="K P" first="Prabha" last="K">Prabha K</name>
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<author><name sortKey="Baranwal, V K" sort="Baranwal, V K" uniqKey="Baranwal V" first="V. K." last="Baranwal">V. K. Baranwal</name>
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<series><title level="j">Journal of Virology</title>
<idno type="ISSN">0022-538X</idno>
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<front><div type="abstract" xml:lang="en"><p>Whole-genome sequencing of an isolate of <named-content content-type="genus-species">Mandarivirus</named-content>
infecting the sweet orange [<named-content content-type="genus-species">Citrus sinensis</named-content>
(L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of <named-content content-type="genus-species">Indian citrus ringspot virus</named-content>
(ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (<named-content content-type="genus-species">Citrus reticulate</named-content>
Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.</p>
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<front><journal-meta><journal-id journal-id-type="nlm-ta">J Virol</journal-id>
<journal-id journal-id-type="iso-abbrev">J. Virol</journal-id>
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<journal-id journal-id-type="pmc">jvi</journal-id>
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<issn pub-type="ppub">0022-538X</issn>
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<publisher><publisher-name>American Society for Microbiology</publisher-name>
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<article-id pub-id-type="doi">10.1128/JVI.02084-12</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Genome Announcements</subject>
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<title-group><article-title>The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>K</surname>
<given-names>Prabha</given-names>
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<contrib contrib-type="author" corresp="yes"><name><surname>Baranwal</surname>
<given-names>V. K.</given-names>
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<aff>Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India</aff>
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<author-notes><corresp>Address correspondence to V. K. Baranwal, <email>vbaranwal2001@yahoo.com</email>
.</corresp>
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<pub-date pub-type="ppub"><month>11</month>
<year>2012</year>
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<volume>86</volume>
<issue>22</issue>
<fpage>12446</fpage>
<lpage>12447</lpage>
<history><date date-type="received"><day>18</day>
<month>8</month>
<year>2012</year>
</date>
<date date-type="accepted"><day>22</day>
<month>8</month>
<year>2012</year>
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<permissions><copyright-statement>Copyright © 2012, American Society for Microbiology. All Rights Reserved.</copyright-statement>
<copyright-year>2012</copyright-year>
<copyright-holder>American Society for Microbiology</copyright-holder>
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<abstract><p>Whole-genome sequencing of an isolate of <named-content content-type="genus-species">Mandarivirus</named-content>
infecting the sweet orange [<named-content content-type="genus-species">Citrus sinensis</named-content>
(L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of <named-content content-type="genus-species">Indian citrus ringspot virus</named-content>
(ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (<named-content content-type="genus-species">Citrus reticulate</named-content>
Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.</p>
</abstract>
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