The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India
Identifieur interne : 000A02 ( Pmc/Corpus ); précédent : 000A01; suivant : 000A03The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India
Auteurs : Prabha K ; V. K. BaranwalSource :
- Journal of Virology [ 0022-538X ] ; 2012.
Abstract
Whole-genome sequencing of an isolate of
Url:
DOI: 10.1128/JVI.02084-12
PubMed: 23087111
PubMed Central: 3486449
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India</title><author><name sortKey="K, Prabha" sort="K, Prabha" uniqKey="K P" first="Prabha" last="K">Prabha K</name></author><author><name sortKey="Baranwal, V K" sort="Baranwal, V K" uniqKey="Baranwal V" first="V. K." last="Baranwal">V. K. Baranwal</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23087111</idno><idno type="pmc">3486449</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486449</idno><idno type="RBID">PMC:3486449</idno><idno type="doi">10.1128/JVI.02084-12</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000A02</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India</title><author><name sortKey="K, Prabha" sort="K, Prabha" uniqKey="K P" first="Prabha" last="K">Prabha K</name></author><author><name sortKey="Baranwal, V K" sort="Baranwal, V K" uniqKey="Baranwal V" first="V. K." last="Baranwal">V. K. Baranwal</name></author></analytic><series><title level="j">Journal of Virology</title><idno type="ISSN">0022-538X</idno><idno type="eISSN">1098-5514</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Whole-genome sequencing of an isolate of <named-content content-type="genus-species">Mandarivirus</named-content> infecting the sweet orange [<named-content content-type="genus-species">Citrus sinensis</named-content> (L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of <named-content content-type="genus-species">Indian citrus ringspot virus</named-content> (ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (<named-content content-type="genus-species">Citrus reticulate</named-content> Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.</p></div></front></TEI><pmc article-type="announcement"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">J Virol</journal-id><journal-id journal-id-type="iso-abbrev">J. Virol</journal-id><journal-id journal-id-type="hwp">jvi</journal-id><journal-id journal-id-type="pmc">jvi</journal-id><journal-id journal-id-type="publisher-id">JVI</journal-id><journal-title-group><journal-title>Journal of Virology</journal-title></journal-title-group><issn pub-type="ppub">0022-538X</issn><issn pub-type="epub">1098-5514</issn><publisher><publisher-name>American Society for Microbiology</publisher-name><publisher-loc>1752 N St., N.W., Washington, DC</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23087111</article-id><article-id pub-id-type="pmc">3486449</article-id><article-id pub-id-type="publisher-id">02084-12</article-id><article-id pub-id-type="doi">10.1128/JVI.02084-12</article-id><article-categories><subj-group subj-group-type="heading"><subject>Genome Announcements</subject></subj-group></article-categories><title-group><article-title>The Genome Sequence of an Isolate of Indian Citrus Ringspot Virus Infecting the Sweet Orange in India</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>K</surname><given-names>Prabha</given-names></name></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Baranwal</surname><given-names>V. K.</given-names></name></contrib><aff>Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India</aff></contrib-group><author-notes><corresp>Address correspondence to V. K. Baranwal, <email>vbaranwal2001@yahoo.com</email>.</corresp></author-notes><pub-date pub-type="ppub"><month>11</month><year>2012</year></pub-date><volume>86</volume><issue>22</issue><fpage>12446</fpage><lpage>12447</lpage><history><date date-type="received"><day>18</day><month>8</month><year>2012</year></date><date date-type="accepted"><day>22</day><month>8</month><year>2012</year></date></history><permissions><copyright-statement>Copyright © 2012, American Society for Microbiology. All Rights Reserved.</copyright-statement><copyright-year>2012</copyright-year><copyright-holder>American Society for Microbiology</copyright-holder></permissions><self-uri xlink:title="pdf" xlink:type="simple" xlink:href="zjv02212012446.pdf"></self-uri><abstract><p>Whole-genome sequencing of an isolate of <named-content content-type="genus-species">Mandarivirus</named-content> infecting the sweet orange [<named-content content-type="genus-species">Citrus sinensis</named-content> (L) Blanco] in the western part of India (Pune) was done. The single-stranded positive-sense RNA genome of <named-content content-type="genus-species">Indian citrus ringspot virus</named-content> (ICRSV) Pune has 7,560 nucleotides (nt), excluding a poly(A) tail, comprised of 27.98% (2,115 nt) A, 32.12% (2,428 nt) C, 19.68% (1,488 nt) G, and 20.22% (1,529 nt) T residues. The genome, organized into six open reading frames (ORFs), shares 97.7% sequence identity with the complete genome of the ICRSV K1 isolate (AF406744.1) infecting the kinnow (<named-content content-type="genus-species">Citrus reticulate</named-content> Blanco, a hybrid between King and Willow mandarins) in north India. The ICRSV Pune genome formed a complex secondary structure with a large number of unpaired cytosine-rich regions, and recombination analysis highlighted potential recombination in the ICRSV genome.</p></abstract><custom-meta-group><custom-meta><meta-name>access-type</meta-name><meta-value>free</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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