Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium
Identifieur interne : 00C835 ( Main/Exploration ); précédent : 00C834; suivant : 00C836Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium
Auteurs : S. Baena [France, Colombie] ; M.-L. Fardeau [France] ; B. Ollivier [France] ; M. Labat [France] ; P. Thomas [France] ; J.-L. Garcia [France, Australie] ; B. K. C. Patel [Australie]Source :
- International journal of systematic bacteriology [ 0020-7713 ] ; 1999.
Descripteurs français
- Pascal (Inist)
English descriptors
- KwdEn :
Abstract
A novel, asaccharolytic, amino-acid-degrading bacterium, designated strain GLU-3T, was isolated from an anaerobic lagoon of a dairy wastewater treatment plant. Strain GLU-3T stained Gram-negative and was an obligately anaerobic, non-spore-forming, slightly curved, rod-shaped bacterium (0.3 × 4.0-6.0 μm) which existed singly or in pairs. The DNA G+C content was 43 mol%. Optimum growth occurred at 35 °C and pH 7.5 on arginine with a generation time of 16 h. Good growth was obtained on arginine, histidine, threonine and glycine. Acetate was the end-product formed from all these substrates, but in addition, a trace of formate was detected from arginine and histidine, and ornithine was produced from arginine. Strain GLU-3T grew slowly on glutamate and produced acetate, carbon dioxide, formate, hydrogen and traces of propionate as the end-products. In syntrophic association with Methanobacterium formicicum, strain GLU-3T oxidized arginine, histidine and glutamate to give propionate as the major product; acetate, carbon dioxide and methane were also produced. Strain GLU-3T did not degrade alanine and the branched-chain amino acids valine, leucine and isoleucine either in pure culture or in association with M. formicicum. The nearest phylogenetic relative of strain GLU-3T was the thermophile Selenomonas acidaminovorans (similarity value of 89.5%). As strain GLU-3T is phylogenetically, physiologically and genotypically different from other amino-acid-degrading genera, it is proposed that it should be designated a new species of a new genus Aminomonas paucivorans gen. nov., sp. nov. (DSM 12260T).
Affiliations:
- Australie, Colombie, France
- Provence-Alpes-Côte d'Azur
- Marseille
- Université de Provence, Université de la Méditerranée
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Baena</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Departamento de Biologia, Pontificia Universidad Javeriana, POB 56710</s1><s2>SantaFe de Bogota</s2><s3>COL</s3><sZ>1 aut.</sZ></inist:fA14><country>Colombie</country><wicri:noRegion>SantaFe de Bogota</wicri:noRegion></affiliation></author><author><name sortKey="Fardeau, M L" sort="Fardeau, M L" uniqKey="Fardeau M" first="M.-L." last="Fardeau">M.-L. Fardeau</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation></author><author><name sortKey="Ollivier, B" sort="Ollivier, B" uniqKey="Ollivier B" first="B." last="Ollivier">B. Ollivier</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation></author><author><name sortKey="Labat, M" sort="Labat, M" uniqKey="Labat M" first="M." last="Labat">M. 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Thomas</name><affiliation wicri:level="4"><inist:fA14 i1="03"><s1>Département de Biologie, Université de la Mediterranée</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>5 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Garcia, J L" sort="Garcia, J L" uniqKey="Garcia J" first="J.-L." last="Garcia">J.-L. Garcia</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science and Technology, Griffith University</s1><s2>Nathan, Brisbane 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Nathan, Brisbane 4111</wicri:noRegion></affiliation></author><author><name sortKey="Patel, B K C" sort="Patel, B K C" uniqKey="Patel B" first="B. K. C." last="Patel">B. K. C. Patel</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science and Technology, Griffith University</s1><s2>Nathan, Brisbane 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Nathan, Brisbane 4111</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">99-0402006</idno><date when="1999">1999</date><idno type="stanalyst">PASCAL 99-0402006 INIST</idno><idno type="RBID">Pascal:99-0402006</idno><idno type="wicri:Area/PascalFrancis/Corpus">006292</idno><idno type="wicri:Area/PascalFrancis/Curation">006D62</idno><idno type="wicri:Area/PascalFrancis/Checkpoint">006150</idno><idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">006150</idno><idno type="wicri:doubleKey">0020-7713:1999:Baena S:aminomonas:paucivorans:gen</idno><idno type="wicri:Area/Main/Merge">00D863</idno><idno type="wicri:Area/Main/Curation">00C835</idno><idno type="wicri:Area/Main/Exploration">00C835</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium</title><author><name sortKey="Baena, S" sort="Baena, S" uniqKey="Baena S" first="S." last="Baena">S. Baena</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Departamento de Biologia, Pontificia Universidad Javeriana, POB 56710</s1><s2>SantaFe de Bogota</s2><s3>COL</s3><sZ>1 aut.</sZ></inist:fA14><country>Colombie</country><wicri:noRegion>SantaFe de Bogota</wicri:noRegion></affiliation></author><author><name sortKey="Fardeau, M L" sort="Fardeau, M L" uniqKey="Fardeau M" first="M.-L." last="Fardeau">M.-L. Fardeau</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation></author><author><name sortKey="Ollivier, B" sort="Ollivier, B" uniqKey="Ollivier B" first="B." last="Ollivier">B. Ollivier</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation></author><author><name sortKey="Labat, M" sort="Labat, M" uniqKey="Labat M" first="M." last="Labat">M. Labat</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation></author><author><name sortKey="Thomas, P" sort="Thomas, P" uniqKey="Thomas P" first="P." last="Thomas">P. Thomas</name><affiliation wicri:level="4"><inist:fA14 i1="03"><s1>Département de Biologie, Université de la Mediterranée</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>5 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de la Méditerranée</orgName></affiliation></author><author><name sortKey="Garcia, J L" sort="Garcia, J L" uniqKey="Garcia J" first="J.-L." last="Garcia">J.-L. Garcia</name><affiliation wicri:level="4"><inist:fA14 i1="01"><s1>Laboratoire ORSTOM de Microbiologie des Anaérobies, Université de Provence, CESB/ESIL Case 925, 163 Avenue de Luminy</s1><s2>13288 Marseille</s2><s3>FRA</s3><sZ>1 aut.</sZ><sZ>2 aut.</sZ><sZ>3 aut.</sZ><sZ>4 aut.</sZ><sZ>6 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>13288 Marseille</wicri:noRegion><placeName><settlement type="city">Marseille</settlement><region type="région" nuts="2">Provence-Alpes-Côte d'Azur</region><settlement type="city">Marseille</settlement></placeName><orgName type="university">Université de Provence</orgName></affiliation><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science and Technology, Griffith University</s1><s2>Nathan, Brisbane 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Nathan, Brisbane 4111</wicri:noRegion></affiliation></author><author><name sortKey="Patel, B K C" sort="Patel, B K C" uniqKey="Patel B" first="B. K. C." last="Patel">B. K. C. Patel</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>School of Biomolecular and Biomedical Sciences, Faculty of Science and Technology, Griffith University</s1><s2>Nathan, Brisbane 4111</s2><s3>AUS</s3><sZ>6 aut.</sZ><sZ>7 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Nathan, Brisbane 4111</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">International journal of systematic bacteriology</title><title level="j" type="abbreviated">Int. j. syst. bacteriol.</title><idno type="ISSN">0020-7713</idno><imprint><date when="1999">1999</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">International journal of systematic bacteriology</title><title level="j" type="abbreviated">Int. j. syst. bacteriol.</title><idno type="ISSN">0020-7713</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Aminoacid</term><term>Anaerobe</term><term>Catabolism</term><term>Characterization</term><term>Description</term><term>Genotype</term><term>Mesophily</term><term>New genus</term><term>New species</term><term>Phenotype</term><term>Phylogeny</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Aminoacide</term><term>Catabolisme</term><term>Genre nouveau</term><term>Espèce nouvelle</term><term>Mésophilie</term><term>Anaérobie</term><term>Caractérisation</term><term>Phénotype</term><term>Génotype</term><term>Phylogenèse</term><term>Description</term><term>Aminomonas paucivorans</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A novel, asaccharolytic, amino-acid-degrading bacterium, designated strain GLU-3<sup>T</sup>, was isolated from an anaerobic lagoon of a dairy wastewater treatment plant. Strain GLU-3<sup>T</sup> stained Gram-negative and was an obligately anaerobic, non-spore-forming, slightly curved, rod-shaped bacterium (0.3 × 4.0-6.0 μm) which existed singly or in pairs. The DNA G+C content was 43 mol%. Optimum growth occurred at 35 °C and pH 7.5 on arginine with a generation time of 16 h. Good growth was obtained on arginine, histidine, threonine and glycine. Acetate was the end-product formed from all these substrates, but in addition, a trace of formate was detected from arginine and histidine, and ornithine was produced from arginine. Strain GLU-3<sup>T</sup> grew slowly on glutamate and produced acetate, carbon dioxide, formate, hydrogen and traces of propionate as the end-products. In syntrophic association with Methanobacterium formicicum, strain GLU-3<sup>T</sup> oxidized arginine, histidine and glutamate to give propionate as the major product; acetate, carbon dioxide and methane were also produced. Strain GLU-3<sup>T</sup> did not degrade alanine and the branched-chain amino acids valine, leucine and isoleucine either in pure culture or in association with M. formicicum. The nearest phylogenetic relative of strain GLU-3<sup>T</sup> was the thermophile Selenomonas acidaminovorans (similarity value of 89.5%). As strain GLU-3T is phylogenetically, physiologically and genotypically different from other amino-acid-degrading genera, it is proposed that it should be designated a new species of a new genus Aminomonas paucivorans gen. nov., sp. nov. (DSM 12260<sup>T</sup>).</div></front></TEI><affiliations><list><country><li>Australie</li><li>Colombie</li><li>France</li></country><region><li>Provence-Alpes-Côte d'Azur</li></region><settlement><li>Marseille</li></settlement><orgName><li>Université de Provence</li><li>Université de la Méditerranée</li></orgName></list><tree><country name="France"><region name="Provence-Alpes-Côte d'Azur"><name sortKey="Baena, S" sort="Baena, S" uniqKey="Baena S" first="S." last="Baena">S. Baena</name></region><name sortKey="Fardeau, M L" sort="Fardeau, M L" uniqKey="Fardeau M" first="M.-L." last="Fardeau">M.-L. Fardeau</name><name sortKey="Garcia, J L" sort="Garcia, J L" uniqKey="Garcia J" first="J.-L." last="Garcia">J.-L. Garcia</name><name sortKey="Labat, M" sort="Labat, M" uniqKey="Labat M" first="M." last="Labat">M. Labat</name><name sortKey="Ollivier, B" sort="Ollivier, B" uniqKey="Ollivier B" first="B." last="Ollivier">B. Ollivier</name><name sortKey="Thomas, P" sort="Thomas, P" uniqKey="Thomas P" first="P." last="Thomas">P. Thomas</name></country><country name="Colombie"><noRegion><name sortKey="Baena, S" sort="Baena, S" uniqKey="Baena S" first="S." last="Baena">S. Baena</name></noRegion></country><country name="Australie"><noRegion><name sortKey="Garcia, J L" sort="Garcia, J L" uniqKey="Garcia J" first="J.-L." last="Garcia">J.-L. Garcia</name></noRegion><name sortKey="Patel, B K C" sort="Patel, B K C" uniqKey="Patel B" first="B. K. C." last="Patel">B. K. C. Patel</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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