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Taking the Next Step: Building an Arabidopsis Information Portal[OA]

Identifieur interne : 000233 ( Pmc/Corpus ); précédent : 000232; suivant : 000234

Taking the Next Step: Building an Arabidopsis Information Portal[OA]

Auteurs :

Source :

RBID : PMC:3406920

Abstract

The Arabidopsis Information Portal (AIP), a resource expected to provide access to all community data and combine outputs into a single user-friendly interface, has emerged from community discussions over the last 23 months. These discussions began during two closely linked workshops in early 2010 that established the International Arabidopsis Informatics Consortium (IAIC). The design of the AIP will provide core functionality while remaining flexible to encourage multiple contributors and constant innovation. An IAIC-hosted Design Workshop in December 2011 proposed a structure for the AIP to provide a framework for the minimal components of a functional community portal while retaining flexibility to rapidly extend the resource to other species. We now invite broader participation in the AIP development process so that the resource can be implemented in a timely manner.


Url:
DOI: 10.1105/tpc.112.100669
PubMed: 22751211
PubMed Central: 3406920

Links to Exploration step

PMC:3406920

Le document en format XML

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<title xml:lang="en">Taking the Next Step: Building an Arabidopsis Information Portal
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<sup>[OA]</sup>
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<title xml:lang="en" level="a" type="main">Taking the Next Step: Building an Arabidopsis Information Portal
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<sup>[OA]</sup>
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<series>
<title level="j">The Plant Cell</title>
<idno type="ISSN">1040-4651</idno>
<idno type="eISSN">1532-298X</idno>
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<div type="abstract" xml:lang="en">
<p>The Arabidopsis Information Portal (
<xref ref-type="def" rid="def1">AIP</xref>
), a resource expected to provide access to all community data and combine outputs into a single user-friendly interface, has emerged from community discussions over the last 23 months. These discussions began during two closely linked workshops in early 2010 that established the International Arabidopsis Informatics Consortium (
<xref ref-type="def" rid="def3">IAIC</xref>
). The design of the
<xref ref-type="def" rid="def1">AIP</xref>
will provide core functionality while remaining flexible to encourage multiple contributors and constant innovation. An
<xref ref-type="def" rid="def3">IAIC</xref>
-hosted Design Workshop in December 2011 proposed a structure for the
<xref ref-type="def" rid="def1">AIP</xref>
to provide a framework for the minimal components of a functional community portal while retaining flexibility to rapidly extend the resource to other species. We now invite broader participation in the
<xref ref-type="def" rid="def1">AIP</xref>
development process so that the resource can be implemented in a timely manner.</p>
</div>
</front>
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<pmc article-type="article-commentary">
<pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Plant Cell</journal-id>
<journal-id journal-id-type="iso-abbrev">Plant Cell</journal-id>
<journal-id journal-id-type="hwp">plantcell</journal-id>
<journal-id journal-id-type="publisher-id">aspb</journal-id>
<journal-title-group>
<journal-title>The Plant Cell</journal-title>
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<issn pub-type="ppub">1040-4651</issn>
<issn pub-type="epub">1532-298X</issn>
<publisher>
<publisher-name>American Society of Plant Biologists</publisher-name>
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<article-categories>
<subj-group subj-group-type="heading">
<subject>Commentary</subject>
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<article-title>Taking the Next Step: Building an Arabidopsis Information Portal
<xref ref-type="author-notes" rid="fn2">
<sup>[OA]</sup>
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<contrib contrib-type="author">
<collab>The International Arabidopsis Informatics Consortium</collab>
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<sup>1</sup>
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<xref ref-type="corresp" rid="cor2">
<sup>2</sup>
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<aff id="aff1">
<label>1</label>
A list of participants and their affiliations is provided at the end of this article</aff>
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<author-notes>
<corresp id="cor2">
<label>2</label>
Address correspondence to
<email>arabidopsisinformatics@gmail.com</email>
.</corresp>
<fn id="fn2">
<label>[OA]</label>
<p>Open Access articles can be viewed online without a subscription.</p>
</fn>
<fn>
<p>
<ext-link ext-link-type="uri" xlink:href="http://www.plantcell.org/cgi/doi/10.1105/tpc.111.093435">www.plantcell.org/cgi/doi/10.1105/tpc.112.100669</ext-link>
</p>
</fn>
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<pub-date pub-type="epub-ppub">
<month>6</month>
<year>2012</year>
</pub-date>
<pmc-comment>Fake ppub date generated by PMC from publisher pub-date/@pub-type='epub-ppub' </pmc-comment>
<pub-date pub-type="ppub">
<month>6</month>
<year>2012</year>
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<month>6</month>
<year>2012</year>
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<pmc-comment> PMC Release delay is 0 months and 0 days and was based on the . </pmc-comment>
<volume>24</volume>
<issue>6</issue>
<fpage>2248</fpage>
<lpage>2256</lpage>
<history>
<date date-type="received">
<day>17</day>
<month>5</month>
<year>2012</year>
</date>
<date date-type="rev-recd">
<day>5</day>
<month>6</month>
<year>2012</year>
</date>
<date date-type="accepted">
<day>13</day>
<month>6</month>
<year>2012</year>
</date>
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<permissions>
<copyright-statement>© 2012 American Society of Plant Biologists. All rights reserved.</copyright-statement>
<copyright-year>2012</copyright-year>
<license license-type="open-access">
<license-p>Open Access articles can be viewed online without a subscription.</license-p>
</license>
</permissions>
<abstract>
<p>The Arabidopsis Information Portal (
<xref ref-type="def" rid="def1">AIP</xref>
), a resource expected to provide access to all community data and combine outputs into a single user-friendly interface, has emerged from community discussions over the last 23 months. These discussions began during two closely linked workshops in early 2010 that established the International Arabidopsis Informatics Consortium (
<xref ref-type="def" rid="def3">IAIC</xref>
). The design of the
<xref ref-type="def" rid="def1">AIP</xref>
will provide core functionality while remaining flexible to encourage multiple contributors and constant innovation. An
<xref ref-type="def" rid="def3">IAIC</xref>
-hosted Design Workshop in December 2011 proposed a structure for the
<xref ref-type="def" rid="def1">AIP</xref>
to provide a framework for the minimal components of a functional community portal while retaining flexibility to rapidly extend the resource to other species. We now invite broader participation in the
<xref ref-type="def" rid="def1">AIP</xref>
development process so that the resource can be implemented in a timely manner.</p>
</abstract>
</article-meta>
<notes>
<glossary>
<title>Glossary</title>
<def-list>
<def-item>
<term id="term1">AIP</term>
<def id="def1">
<p>Arabidopsis Information Portal</p>
</def>
</def-item>
<def-item>
<term id="term2">TAIR</term>
<def id="def2">
<p>The Arabidopsis Information Resource</p>
</def>
</def-item>
<def-item>
<term id="term3">IAIC</term>
<def id="def3">
<p>International Arabidopsis Information Consortium</p>
</def>
</def-item>
<def-item>
<term id="term4">GO</term>
<def id="def4">
<p>Gene Ontology</p>
</def>
</def-item>
<def-item>
<term id="term5">SAB</term>
<def id="def5">
<p>Scientific Advisory Board</p>
</def>
</def-item>
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