An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
Identifieur interne : 000232 ( Pmc/Corpus ); précédent : 000231; suivant : 000233An International Bioinformatics Infrastructure to Underpin the Arabidopsis Community
Auteurs :Source :
- The Plant Cell [ 1040-4651 ] ; 2010.
Abstract
The future bioinformatics needs of the
Url:
DOI: 10.1105/tpc.110.078519
PubMed: 20807877
PubMed Central: 2947164
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PMC:2947164Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">An International Bioinformatics Infrastructure to Underpin the <italic>Arabidopsis</italic>
Community</title>
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<series><title level="j">The Plant Cell</title>
<idno type="ISSN">1040-4651</idno>
<idno type="eISSN">1532-298X</idno>
<imprint><date when="2010">2010</date>
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<front><div type="abstract" xml:lang="en"><p>The future bioinformatics needs of the <italic>Arabidopsis</italic>
community as well as those of other scientific communities that depend on <italic>Arabidopsis</italic>
resources were discussed at a pair of recent meetings held by the Multinational Arabidopsis Steering Committee and the North American Arabidopsis Steering Committee. There are extensive tools and resources for information storage, curation, and retrieval of <italic>Arabidopsis</italic>
data that have been developed over recent years primarily through the activities of The Arabidopsis Information Resource, the Nottingham Arabidopsis Stock Centre, and the Arabidopsis Biological Resource Center, among others. However, the rapid expansion in many data types, the international basis of the <italic>Arabidopsis</italic>
community, and changing priorities of the funding agencies all suggest the need for changes in the way informatics infrastructure is developed and maintained. We propose that there is a need for a single core resource that is integrated into a larger international consortium of investigators. We envision this to consist of a distributed system of data, tools, and resources, accessed via a single information portal and funded by a variety of sources, under shared international management of an International Arabidopsis Informatics Consortium (IAIC). This article outlines the proposal for the development, management, operations, and continued funding for the IAIC.</p>
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</front>
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<pmc article-type="article-commentary"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Plant Cell</journal-id>
<journal-id journal-id-type="hwp">plantcell</journal-id>
<journal-id journal-id-type="publisher-id">aspb</journal-id>
<journal-title-group><journal-title>The Plant Cell</journal-title>
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<issn pub-type="ppub">1040-4651</issn>
<issn pub-type="epub">1532-298X</issn>
<publisher><publisher-name>American Society of Plant Biologists</publisher-name>
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<article-meta><article-id pub-id-type="pmid">20807877</article-id>
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<article-id pub-id-type="publisher-id">078519</article-id>
<article-id pub-id-type="doi">10.1105/tpc.110.078519</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Commentary</subject>
</subj-group>
</article-categories>
<title-group><article-title>An International Bioinformatics Infrastructure to Underpin the <italic>Arabidopsis</italic>
Community</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><collab><xref ref-type="sec" rid="sec1">International Arabidopsis Informatics Consortium</xref>
</collab>
<xref ref-type="author-notes" rid="fn1"><sup>1</sup>
</xref>
<xref ref-type="corresp" rid="cor1"><sup>2</sup>
</xref>
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<author-notes><corresp id="cor1"><label>2</label>
Address correspondence to <email>arabidopsisinformatics@gmail.com</email>
.</corresp>
<fn id="fn1"><label>1</label>
<p>A list of participants and their affiliations is provided at the end of this article.</p>
</fn>
<fn><p><ext-link ext-link-type="uri" xlink:href="www.plantcell.org/cgi/doi/10.1105/tpc.110.078519">www.plantcell.org/cgi/doi/10.1105/tpc.110.078519</ext-link>
</p>
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</author-notes>
<pmc-comment>Fake ppub date generated by PMC from publisher pub-date/@pub-type='epub-ppub' </pmc-comment>
<pub-date pub-type="ppub"><month>8</month>
<year>2010</year>
</pub-date>
<pub-date pub-type="epub"><day>20</day>
<month>8</month>
<year>2010</year>
</pub-date>
<volume>22</volume>
<issue>8</issue>
<fpage>2530</fpage>
<lpage>2536</lpage>
<permissions><copyright-statement>© 2010 American Society of Plant Biologists</copyright-statement>
<copyright-year>2010</copyright-year>
</permissions>
<abstract><p>The future bioinformatics needs of the <italic>Arabidopsis</italic>
community as well as those of other scientific communities that depend on <italic>Arabidopsis</italic>
resources were discussed at a pair of recent meetings held by the Multinational Arabidopsis Steering Committee and the North American Arabidopsis Steering Committee. There are extensive tools and resources for information storage, curation, and retrieval of <italic>Arabidopsis</italic>
data that have been developed over recent years primarily through the activities of The Arabidopsis Information Resource, the Nottingham Arabidopsis Stock Centre, and the Arabidopsis Biological Resource Center, among others. However, the rapid expansion in many data types, the international basis of the <italic>Arabidopsis</italic>
community, and changing priorities of the funding agencies all suggest the need for changes in the way informatics infrastructure is developed and maintained. We propose that there is a need for a single core resource that is integrated into a larger international consortium of investigators. We envision this to consist of a distributed system of data, tools, and resources, accessed via a single information portal and funded by a variety of sources, under shared international management of an International Arabidopsis Informatics Consortium (IAIC). This article outlines the proposal for the development, management, operations, and continued funding for the IAIC.</p>
</abstract>
</article-meta>
</front>
</pmc>
</record>
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