CyberinfraV1, Ncbi, Checkpoint, bibRecord, 000586

Genome Annotation and Curation Using MAKER and MAKER-P

Identifieur interne : 000586 ( Ncbi/Checkpoint ); précédent : 000585; suivant : 000587

Genome Annotation and Curation Using MAKER and MAKER-P

Auteurs : Michael S. Campbell [États-Unis] ; Carson Holt [États-Unis] ; Barry Moore [États-Unis] ; Mark Yandell [États-Unis]

Source :

Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] [ 1934-3396 ] ; 2014.

RBID : PMC:4286374

Abstract

This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286374

DOI: 10.1002/0471250953.bi0411s48
PubMed: 25501943
PubMed Central: 4286374

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Pmc, to step Corpus: 000431
to stream Pmc, to step Curation: 000431
to stream Pmc, to step Checkpoint: 000198
to stream Ncbi, to step Merge: 000586
to stream Ncbi, to step Curation: 000586

Links to Exploration step

PMC:4286374

Le document en format XML

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<author><name sortKey="Campbell, Michael S" sort="Campbell, Michael S" uniqKey="Campbell M" first="Michael S." last="Campbell">Michael S. Campbell</name>
<affiliation wicri:level="2"><nlm:aff id="A1"> Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
</placeName>
<wicri:cityArea> Eccles Institute of Human Genetics, University of Utah, Salt Lake City</wicri:cityArea>
</affiliation>
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<author><name sortKey="Holt, Carson" sort="Holt, Carson" uniqKey="Holt C" first="Carson" last="Holt">Carson Holt</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
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<wicri:cityArea> Eccles Institute of Human Genetics, University of Utah, Salt Lake City</wicri:cityArea>
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<affiliation wicri:level="2"><nlm:aff id="A2"> USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT 84112 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Utah</region>
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<author><name sortKey="Moore, Barry" sort="Moore, Barry" uniqKey="Moore B" first="Barry" last="Moore">Barry Moore</name>
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<author><name sortKey="Holt, Carson" sort="Holt, Carson" uniqKey="Holt C" first="Carson" last="Holt">Carson Holt</name>
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<country xml:lang="fr">États-Unis</country>
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<affiliation wicri:level="2"><nlm:aff id="A2"> USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT 84112 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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</placeName>
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<front><div type="abstract" xml:lang="en"><p id="P1">This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.</p>
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Genome Annotation and Curation Using MAKER and MAKER-P

Genome Annotation and Curation Using MAKER and MAKER-P

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki