CyberinfraV1, Pmc, Curation, bibRecord, 000431

Genome Annotation and Curation Using MAKER and MAKER-P

Identifieur interne : 000431 ( Pmc/Curation ); précédent : 000430; suivant : 000432

Genome Annotation and Curation Using MAKER and MAKER-P

Auteurs : Michael S. Campbell [États-Unis] ; Carson Holt [États-Unis] ; Barry Moore [États-Unis] ; Mark Yandell [États-Unis]

Source :

Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] [ 1934-3396 ] ; 2014.

RBID : PMC:4286374

Abstract

This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4286374

DOI: 10.1002/0471250953.bi0411s48
PubMed: 25501943
PubMed Central: 4286374

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PMC:4286374

Le document en format XML

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<author><name sortKey="Campbell, Michael S" sort="Campbell, Michael S" uniqKey="Campbell M" first="Michael S." last="Campbell">Michael S. Campbell</name>
<affiliation wicri:level="2"><nlm:aff id="A1"> Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112 USA</nlm:aff>
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<placeName><region type="state">Utah</region>
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<wicri:cityArea> Eccles Institute of Human Genetics, University of Utah, Salt Lake City</wicri:cityArea>
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<author><name sortKey="Moore, Barry" sort="Moore, Barry" uniqKey="Moore B" first="Barry" last="Moore">Barry Moore</name>
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<author><name sortKey="Yandell, Mark" sort="Yandell, Mark" uniqKey="Yandell M" first="Mark" last="Yandell">Mark Yandell</name>
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<front><div type="abstract" xml:lang="en"><p id="P1">This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.</p>
</div>
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<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
  <pmc-dir>properties manuscript</pmc-dir>
  <front><journal-meta><journal-id journal-id-type="nlm-journal-id">101157830</journal-id>
<journal-id journal-id-type="pubmed-jr-id">34237</journal-id>
<journal-id journal-id-type="nlm-ta">Curr Protoc Bioinformatics</journal-id>
<journal-id journal-id-type="iso-abbrev">Curr Protoc Bioinformatics</journal-id>
<journal-title-group><journal-title>Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]</journal-title>
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<issn pub-type="ppub">1934-3396</issn>
<issn pub-type="epub">1934-340X</issn>
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<article-id pub-id-type="manuscript">NIHMS649996</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
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<title-group><article-title>Genome Annotation and Curation Using MAKER and MAKER-P</article-title>
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<contrib-group><contrib contrib-type="author"><name><surname>Campbell</surname>
<given-names>Michael S.</given-names>
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<xref ref-type="aff" rid="A1">1</xref>
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<contrib contrib-type="author"><name><surname>Holt</surname>
<given-names>Carson</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Moore</surname>
<given-names>Barry</given-names>
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<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Yandell</surname>
<given-names>Mark</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="corresp" rid="CR1">*</xref>
</contrib>
</contrib-group>
<aff id="A1"><label>1</label>
 Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT 84112 USA</aff>
<aff id="A2"><label>2</label>
 USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT 84112 USA</aff>
<author-notes><corresp id="CR1"><label>*</label>
 Corresponding author, <email>myandell@genetics.utah.edu</email>
</corresp>
</author-notes>
<pub-date pub-type="nihms-submitted"><day>19</day>
<month>12</month>
<year>2014</year>
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<pub-date pub-type="epub"><day>12</day>
<month>12</month>
<year>2014</year>
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<pub-date pub-type="collection"><year>2014</year>
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<pub-date pub-type="pmc-release"><day>12</day>
<month>12</month>
<year>2015</year>
</pub-date>
<volume>48</volume>
<fpage>4.11.1</fpage>
<lpage>4.11.39</lpage>
<pmc-comment>elocation-id from pubmed: 10.1002/0471250953.bi0411s48</pmc-comment>
      <abstract><p id="P1">This unit describes how to use the genome annotation and curation tools MAKER and MAKER-P to annotate protein coding and non-coding RNA genes in newly assembled genomes, update/combine legacy annotations in light of new evidence, add quality metrics to annotations from other pipelines, and map existing annotations to a new assembly. MAKER and MAKER-P can rapidly annotate genomes of any size, and scale to match available computational resources.</p>
</abstract>
<kwd-group><kwd>genome annotation</kwd>
<kwd>comparative genomics</kwd>
<kwd>gene finding</kwd>
<kwd>Plants</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
</record>

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Genome Annotation and Curation Using MAKER and MAKER-P

Genome Annotation and Curation Using MAKER and MAKER-P

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

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