Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom ▿
Identifieur interne : 000909 ( Main/Merge ); précédent : 000908; suivant : 000910Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom ▿
Auteurs : Erinn C. Howard ; Shulei Sun ; Christopher R. Reisch ; Daniela A. Del Valle ; Helmut Bürgmann ; Ronald P. Kiene ; Mary Ann MoranSource :
- Applied and Environmental Microbiology [ 0099-2240 ] ; 2010.
Abstract
Over half of the bacterioplankton cells in ocean surface waters are capable of carrying out a demethylation of the phytoplankton metabolite dimethylsulfoniopropionate (DMSP) that routes the sulfur moiety away from the climatically active gas dimethylsulfide (DMS). In this study, we tracked changes in
Url:
DOI: 10.1128/AEM.01457-10
PubMed: 21097583
PubMed Central: 3020546
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000354
- to stream Pmc, to step Curation: 000354
- to stream Pmc, to step Checkpoint: 000593
- to stream Ncbi, to step Merge: 000179
- to stream Ncbi, to step Curation: 000179
- to stream Ncbi, to step Checkpoint: 000179
Links to Exploration step
PMC:3020546Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom <xref ref-type="fn" rid="fn4">▿</xref>
</title>
<author><name sortKey="Howard, Erinn C" sort="Howard, Erinn C" uniqKey="Howard E" first="Erinn C." last="Howard">Erinn C. Howard</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Reisch, Christopher R" sort="Reisch, Christopher R" uniqKey="Reisch C" first="Christopher R." last="Reisch">Christopher R. Reisch</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Del Valle, Daniela A" sort="Del Valle, Daniela A" uniqKey="Del Valle D" first="Daniela A." last="Del Valle">Daniela A. Del Valle</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Burgmann, Helmut" sort="Burgmann, Helmut" uniqKey="Burgmann H" first="Helmut" last="Bürgmann">Helmut Bürgmann</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kiene, Ronald P" sort="Kiene, Ronald P" uniqKey="Kiene R" first="Ronald P." last="Kiene">Ronald P. Kiene</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moran, Mary Ann" sort="Moran, Mary Ann" uniqKey="Moran M" first="Mary Ann" last="Moran">Mary Ann Moran</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">21097583</idno>
<idno type="pmc">3020546</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020546</idno>
<idno type="RBID">PMC:3020546</idno>
<idno type="doi">10.1128/AEM.01457-10</idno>
<date when="2010">2010</date>
<idno type="wicri:Area/Pmc/Corpus">000354</idno>
<idno type="wicri:Area/Pmc/Curation">000354</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000593</idno>
<idno type="wicri:Area/Ncbi/Merge">000179</idno>
<idno type="wicri:Area/Ncbi/Curation">000179</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000179</idno>
<idno type="wicri:doubleKey">0099-2240:2010:Howard E:changes:in:dimethylsulfoniopropionate</idno>
<idno type="wicri:Area/Main/Merge">000909</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom <xref ref-type="fn" rid="fn4">▿</xref>
</title>
<author><name sortKey="Howard, Erinn C" sort="Howard, Erinn C" uniqKey="Howard E" first="Erinn C." last="Howard">Erinn C. Howard</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sun, Shulei" sort="Sun, Shulei" uniqKey="Sun S" first="Shulei" last="Sun">Shulei Sun</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Reisch, Christopher R" sort="Reisch, Christopher R" uniqKey="Reisch C" first="Christopher R." last="Reisch">Christopher R. Reisch</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Del Valle, Daniela A" sort="Del Valle, Daniela A" uniqKey="Del Valle D" first="Daniela A." last="Del Valle">Daniela A. Del Valle</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Burgmann, Helmut" sort="Burgmann, Helmut" uniqKey="Burgmann H" first="Helmut" last="Bürgmann">Helmut Bürgmann</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kiene, Ronald P" sort="Kiene, Ronald P" uniqKey="Kiene R" first="Ronald P." last="Kiene">Ronald P. Kiene</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moran, Mary Ann" sort="Moran, Mary Ann" uniqKey="Moran M" first="Mary Ann" last="Moran">Mary Ann Moran</name>
<affiliation><nlm:aff id="aff1"></nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Applied and Environmental Microbiology</title>
<idno type="ISSN">0099-2240</idno>
<idno type="eISSN">1098-5336</idno>
<imprint><date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Over half of the bacterioplankton cells in ocean surface waters are capable of carrying out a demethylation of the phytoplankton metabolite dimethylsulfoniopropionate (DMSP) that routes the sulfur moiety away from the climatically active gas dimethylsulfide (DMS). In this study, we tracked changes in <italic>dmdA</italic>
, the gene responsible for DMSP demethylation, over the course of an induced phytoplankton bloom in Gulf of Mexico seawater microcosms. Analysis of >91,000 amplicon sequences indicated 578 different <italic>dmdA</italic>
sequence clusters at a conservative clustering criterion of ≥90% nucleotide sequence identity over the 6-day study. The representation of the major clades of <italic>dmdA</italic>
, several of which are linked to specific taxa through genomes of cultured marine bacterioplankton, remained fairly constant. However, the representation of clusters within these major clades shifted significantly in response to the bloom, including two <italic>Roseobacter</italic>
-like clusters and a SAR11-like cluster, and the best correlate with shifts of the dominant <italic>dmdA</italic>
clades was chlorophyll <italic>a</italic>
concentration. Concurrent 16S rRNA amplification and sequencing indicated the presence of <italic>Roseobacter</italic>
, SAR11, OM60, and marine <italic>Rhodospirillales</italic>
populations, all of which are known to harbor <italic>dmdA</italic>
genes, although the largest taxonomic change was an increase in <italic>Flavobacteriaceae</italic>
, a group not yet demonstrated to have DMSP-demethylating capabilities. Sequence heterogeneity in <italic>dmdA</italic>
and other functional gene populations is becoming increasingly evident with the advent of high-throughput sequencing technologies, and understanding the ecological implications of this heterogeneity is a major challenge for marine microbial ecology.</p>
</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000909 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 000909 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= CyberinfraV1 |flux= Main |étape= Merge |type= RBID |clé= PMC:3020546 |texte= Changes in Dimethylsulfoniopropionate Demethylase Gene Assemblages in Response to an Induced Phytoplankton Bloom ▿ }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:21097583" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \ | NlmPubMed2Wicri -a CyberinfraV1
![]() | This area was generated with Dilib version V0.6.25. | ![]() |