TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
Identifieur interne : 000645 ( Main/Merge ); précédent : 000644; suivant : 000646TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data
Auteurs : Hernan A. Lorenzi [États-Unis] ; Jeff Hoover [États-Unis] ; Jason Inman [États-Unis] ; Todd Safford [États-Unis] ; Sean Murphy [États-Unis] ; Leonid Kagan [États-Unis] ; Shannon J. Williamson [États-Unis]Source :
- Standards in Genomic Sciences [ 1944-3277 ] ; 2011.
Abstract
In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel organisms generated by metagenomic projects has triggered the development of specialized databases and tools focused on particular groups of organisms or data types. Here we describe a pipeline for the functional annotation of viral metagenomic sequence data. The Viral MetaGenome Annotation Pipeline (VMGAP) pipeline takes advantage of a number of specialized databases, such as collections of mobile genetic elements and environmental metagenomes to improve the classification and functional prediction of viral gene products. The pipeline assigns a functional term to each predicted protein sequence following a suite of comprehensive analyses whose results are ranked according to a priority rules hierarchy. Additional annotation is provided in the form of enzyme commission (EC) numbers, GO/MeGO terms and Hidden Markov Models together with supporting evidence.
Url:
DOI: 10.4056/sigs.1694706
PubMed: 21886867
PubMed Central: 3156399
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Williamson</name><affiliation wicri:level="2"><nlm:aff id="aff2">J.CraigVenterInstitute,10355 Science Center Drive, San Diego, CA 92121, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>J.CraigVenterInstitute,10355 Science Center Drive, San Diego, CA 92121</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author></analytic><series><title level="j">Standards in Genomic Sciences</title><idno type="eISSN">1944-3277</idno><imprint><date when="2011">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel organisms generated by metagenomic projects has triggered the development of specialized databases and tools focused on particular groups of organisms or data types. Here we describe a pipeline for the functional annotation of viral metagenomic sequence data. The Viral MetaGenome Annotation Pipeline (VMGAP) pipeline takes advantage of a number of specialized databases, such as collections of mobile genetic elements and environmental metagenomes to improve the classification and functional prediction of viral gene products. The pipeline assigns a functional term to each predicted protein sequence following a suite of comprehensive analyses whose results are ranked according to a priority rules hierarchy. Additional annotation is provided in the form of enzyme commission (EC) numbers, GO/MeGO terms and Hidden Markov Models together with supporting evidence.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Weinbauer, Mg" uniqKey="Weinbauer M">MG Weinbauer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edwards, Ra" uniqKey="Edwards R">RA Edwards</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Edwards, R" uniqKey="Edwards R">R Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cole, Jr" uniqKey="Cole J">JR Cole</name></author><author><name sortKey="Wang, Q" uniqKey="Wang Q">Q Wang</name></author><author><name sortKey="Cardenas, E" uniqKey="Cardenas E">E Cardenas</name></author><author><name sortKey="Fish, J" uniqKey="Fish J">J Fish</name></author><author><name sortKey="Chai, B" uniqKey="Chai B">B Chai</name></author><author><name sortKey="Farris, Rj" uniqKey="Farris R">RJ Farris</name></author><author><name sortKey="Kulam, As" uniqKey="Kulam A">AS Kulam</name></author><author><name sortKey="Mcgarrell, Dm" uniqKey="Mcgarrell D">DM McGarrell</name></author><author><name sortKey="Marsh, T" uniqKey="Marsh T">T Marsh</name></author><author><name sortKey="Garrity, Gm" uniqKey="Garrity G">GM Garrity</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Desantis, Tz" uniqKey="Desantis T">TZ DeSantis</name></author><author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name></author><author><name sortKey="Larsen, N" uniqKey="Larsen N">N Larsen</name></author><author><name sortKey="Rojas, M" uniqKey="Rojas M">M Rojas</name></author><author><name sortKey="Brodie, El" uniqKey="Brodie E">EL Brodie</name></author><author><name sortKey="Keller, K" uniqKey="Keller K">K Keller</name></author><author><name sortKey="Huber, T" uniqKey="Huber T">T Huber</name></author><author><name sortKey="Dalevi, D" uniqKey="Dalevi D">D Dalevi</name></author><author><name sortKey="Hu, P" uniqKey="Hu P">P Hu</name></author><author><name sortKey="Andersen, Gl" uniqKey="Andersen G">GL Andersen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huson, Dh" uniqKey="Huson D">DH Huson</name></author><author><name sortKey="Auch, Af" uniqKey="Auch A">AF Auch</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matsen, Fa" uniqKey="Matsen F">FA Matsen</name></author><author><name sortKey="Kodner, Rb" uniqKey="Kodner R">RB Kodner</name></author><author><name sortKey="Armbrust, Ev" uniqKey="Armbrust E">EV Armbrust</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Markowitz, Vm" uniqKey="Markowitz V">VM Markowitz</name></author><author><name sortKey="Ivanova, Nn" uniqKey="Ivanova N">NN Ivanova</name></author><author><name sortKey="Szeto, E" uniqKey="Szeto E">E Szeto</name></author><author><name sortKey="Palaniappan, K" uniqKey="Palaniappan K">K Palaniappan</name></author><author><name sortKey="Chu, K" uniqKey="Chu K">K Chu</name></author><author><name sortKey="Dalevi, D" uniqKey="Dalevi D">D Dalevi</name></author><author><name sortKey="Chen, Im" uniqKey="Chen I">IM Chen</name></author><author><name sortKey="Grechkin, Y" uniqKey="Grechkin Y">Y Grechkin</name></author><author><name sortKey="Dubchak, I" uniqKey="Dubchak I">I Dubchak</name></author><author><name sortKey="Anderson, I" uniqKey="Anderson I">I Anderson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, S" uniqKey="Sun S">S Sun</name></author><author><name sortKey="Chen, J" uniqKey="Chen J">J Chen</name></author><author><name sortKey="Li, W" uniqKey="Li W">W Li</name></author><author><name sortKey="Altintas, I" uniqKey="Altintas I">I Altintas</name></author><author><name sortKey="Lin, A" uniqKey="Lin A">A Lin</name></author><author><name sortKey="Peltier, S" uniqKey="Peltier S">S Peltier</name></author><author><name sortKey="Stocks, K" uniqKey="Stocks K">K Stocks</name></author><author><name sortKey="Allen, Ee" uniqKey="Allen E">EE Allen</name></author><author><name sortKey="Ellisman, M" uniqKey="Ellisman M">M Ellisman</name></author><author><name sortKey="Grethe, J" uniqKey="Grethe J">J Grethe</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name></author><author><name sortKey="Paarmann, D" uniqKey="Paarmann D">D Paarmann</name></author><author><name sortKey="D Souza, M" uniqKey="D Souza M">M D'Souza</name></author><author><name sortKey="Olson, R" uniqKey="Olson R">R Olson</name></author><author><name sortKey="Glass, Em" uniqKey="Glass E">EM Glass</name></author><author><name sortKey="Kubal, M" uniqKey="Kubal M">M Kubal</name></author><author><name sortKey="Paczian, T" uniqKey="Paczian T">T Paczian</name></author><author><name sortKey="Rodriguez, A" uniqKey="Rodriguez A">A Rodriguez</name></author><author><name sortKey="Stevens, R" uniqKey="Stevens R">R Stevens</name></author><author><name sortKey="Wilke, A" uniqKey="Wilke A">A Wilke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ye, Y" uniqKey="Ye Y">Y Ye</name></author><author><name sortKey="Osterman, A" uniqKey="Osterman A">A Osterman</name></author><author><name sortKey="Overbeek, R" uniqKey="Overbeek R">R Overbeek</name></author><author><name sortKey="Godzik, A" uniqKey="Godzik A">A Godzik</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dinsdale, Ea" uniqKey="Dinsdale E">EA Dinsdale</name></author><author><name sortKey="Pantos, O" uniqKey="Pantos O">O Pantos</name></author><author><name sortKey="Smriga, S" uniqKey="Smriga S">S Smriga</name></author><author><name sortKey="Edwards, Ra" uniqKey="Edwards R">RA Edwards</name></author><author><name sortKey="Angly, F" uniqKey="Angly F">F Angly</name></author><author><name sortKey="Wegley, L" uniqKey="Wegley L">L Wegley</name></author><author><name sortKey="Hatay, M" uniqKey="Hatay M">M Hatay</name></author><author><name sortKey="Hall, D" uniqKey="Hall D">D Hall</name></author><author><name sortKey="Brown, E" uniqKey="Brown E">E Brown</name></author><author><name sortKey="Haynes, M" uniqKey="Haynes M">M Haynes</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name></author><author><name sortKey="Overbeek, R" uniqKey="Overbeek R">R Overbeek</name></author><author><name sortKey="Rodriguez, A" uniqKey="Rodriguez A">A Rodriguez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goll, J" uniqKey="Goll J">J Goll</name></author><author><name sortKey="Rusch, Db" uniqKey="Rusch D">DB Rusch</name></author><author><name sortKey="Tanenbaum, Dm" uniqKey="Tanenbaum D">DM Tanenbaum</name></author><author><name sortKey="Thiagarajan, M" uniqKey="Thiagarajan M">M Thiagarajan</name></author><author><name sortKey="Li, K" uniqKey="Li K">K Li</name></author><author><name sortKey="Methe, Ba" uniqKey="Methe B">BA Methe</name></author><author><name sortKey="Yooseph, S" uniqKey="Yooseph S">S Yooseph</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Signal, P" uniqKey="Signal P">P Signal</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Emanuelsson, O" uniqKey="Emanuelsson O">O Emanuelsson</name></author><author><name sortKey="Brunak, S" uniqKey="Brunak S">S Brunak</name></author><author><name sortKey="Von Heijne, G" uniqKey="Von Heijne G">G von Heijne</name></author><author><name sortKey="Nielsen, H" uniqKey="Nielsen H">H Nielsen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krogh, A" uniqKey="Krogh A">A Krogh</name></author><author><name sortKey="Larsson, B" uniqKey="Larsson B">B Larsson</name></author><author><name sortKey="Von Heijne, G" uniqKey="Von Heijne G">G von Heijne</name></author><author><name sortKey="Sonnhammer, El" uniqKey="Sonnhammer E">EL Sonnhammer</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Claudel Renard, C" uniqKey="Claudel Renard C">C Claudel-Renard</name></author><author><name sortKey="Chevalet, C" uniqKey="Chevalet C">C Chevalet</name></author><author><name sortKey="Faraut, T" uniqKey="Faraut T">T Faraut</name></author><author><name sortKey="Kahn, D" uniqKey="Kahn D">D Kahn</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Davidsen, T" uniqKey="Davidsen T">T Davidsen</name></author><author><name sortKey="Beck, E" uniqKey="Beck E">E Beck</name></author><author><name sortKey="Ganapathy, A" uniqKey="Ganapathy A">A Ganapathy</name></author><author><name sortKey="Montgomery, R" uniqKey="Montgomery R">R Montgomery</name></author><author><name sortKey="Zafar, N" uniqKey="Zafar N">N Zafar</name></author><author><name sortKey="Yang, Q" uniqKey="Yang Q">Q Yang</name></author><author><name sortKey="Madupu, R" uniqKey="Madupu R">R Madupu</name></author><author><name sortKey="Goetz, P" uniqKey="Goetz P">P Goetz</name></author><author><name sortKey="Galinsky, K" uniqKey="Galinsky K">K Galinsky</name></author><author><name sortKey="White, O" uniqKey="White O">O White</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Finn, Rd" uniqKey="Finn R">RD Finn</name></author><author><name sortKey="Mistry, J" uniqKey="Mistry J">J Mistry</name></author><author><name sortKey="Tate, J" uniqKey="Tate J">J Tate</name></author><author><name sortKey="Coggill, P" uniqKey="Coggill P">P Coggill</name></author><author><name sortKey="Heger, A" uniqKey="Heger A">A Heger</name></author><author><name sortKey="Pollington, Je" uniqKey="Pollington J">JE Pollington</name></author><author><name sortKey="Gavin, Ol" uniqKey="Gavin O">OL Gavin</name></author><author><name sortKey="Gunasekaran, P" uniqKey="Gunasekaran P">P Gunasekaran</name></author><author><name sortKey="Ceric, G" uniqKey="Ceric G">G Ceric</name></author><author><name sortKey="Forslund, K" uniqKey="Forslund K">K Forslund</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Selengut, Jd" uniqKey="Selengut J">JD Selengut</name></author><author><name sortKey="Haft, Dh" uniqKey="Haft D">DH Haft</name></author><author><name sortKey="Davidsen, T" uniqKey="Davidsen T">T Davidsen</name></author><author><name sortKey="Ganapathy, A" uniqKey="Ganapathy A">A Ganapathy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leplae, R" uniqKey="Leplae R">R Leplae</name></author><author><name sortKey="Hebrant, A" uniqKey="Hebrant A">A Hebrant</name></author><author><name sortKey="Wodak, Sj" uniqKey="Wodak S">SJ Wodak</name></author><author><name sortKey="Toussaint, A" uniqKey="Toussaint A">A Toussaint</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marchler Bauer, A" uniqKey="Marchler Bauer A">A Marchler-Bauer</name></author><author><name sortKey="Lu, S" uniqKey="Lu S">S Lu</name></author><author><name sortKey="Anderson, Jb" uniqKey="Anderson J">JB Anderson</name></author><author><name sortKey="Chitsaz, F" uniqKey="Chitsaz F">F Chitsaz</name></author><author><name sortKey="Derbyshire, Mk" uniqKey="Derbyshire M">MK Derbyshire</name></author><author><name sortKey="Deweese Scott, C" uniqKey="Deweese Scott C">C DeWeese-Scott</name></author><author><name sortKey="Fong, Jh" uniqKey="Fong J">JH Fong</name></author><author><name sortKey="Geer, Ly" uniqKey="Geer L">LY Geer</name></author><author><name sortKey="Geer, Rc" uniqKey="Geer R">RC Geer</name></author><author><name sortKey="Gonzales, Nr" uniqKey="Gonzales N">NR Gonzales</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tanenbaum, Dm" uniqKey="Tanenbaum D">DM Tanenbaum</name></author><author><name sortKey="Goll, J" uniqKey="Goll J">J Goll</name></author><author><name sortKey="Murphy, S" uniqKey="Murphy S">S Murphy</name></author><author><name sortKey="Kumar, P" uniqKey="Kumar P">P Kumar</name></author><author><name sortKey="Zafar, N" uniqKey="Zafar N">N Zafar</name></author><author><name sortKey="Thiagarajan, M" uniqKey="Thiagarajan M">M Thiagarajan</name></author><author><name sortKey="Madupu, R" uniqKey="Madupu R">R Madupu</name></author><author><name sortKey="Davidsen, T" uniqKey="Davidsen T">T Davidsen</name></author><author><name sortKey="Kagan, L" uniqKey="Kagan L">L Kagan</name></author><author><name sortKey="Kravitz, S" uniqKey="Kravitz S">S Kravitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Noguchi, H" uniqKey="Noguchi H">H Noguchi</name></author><author><name sortKey="Taniguchi, T" uniqKey="Taniguchi T">T Taniguchi</name></author><author><name sortKey="Itoh, T" uniqKey="Itoh T">T Itoh</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Schoenfeld, T" uniqKey="Schoenfeld T">T Schoenfeld</name></author><author><name sortKey="Patterson, M" uniqKey="Patterson M">M Patterson</name></author><author><name sortKey="Richardson, Pm" uniqKey="Richardson P">PM Richardson</name></author><author><name sortKey="Wommack, Ke" uniqKey="Wommack K">KE Wommack</name></author><author><name sortKey="Young, M" uniqKey="Young M">M Young</name></author><author><name sortKey="Mead, D" uniqKey="Mead D">D Mead</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, T" uniqKey="Zhang T">T Zhang</name></author><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name></author><author><name sortKey="Lee, Wh" uniqKey="Lee W">WH Lee</name></author><author><name sortKey="Run, Jq" uniqKey="Run J">JQ Run</name></author><author><name sortKey="Wei, Cl" uniqKey="Wei C">CL Wei</name></author><author><name sortKey="Soh, Sw" uniqKey="Soh S">SW Soh</name></author><author><name sortKey="Hibberd, Ml" uniqKey="Hibberd M">ML Hibberd</name></author><author><name sortKey="Liu, Et" uniqKey="Liu E">ET Liu</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author><author><name sortKey="Ruan, Y" uniqKey="Ruan Y">Y Ruan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Breitbart, M" uniqKey="Breitbart 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Kelley</name></author><author><name sortKey="Mahaffy, Jm" uniqKey="Mahaffy J">JM Mahaffy</name></author><author><name sortKey="Nulton, J" uniqKey="Nulton J">J Nulton</name></author><author><name sortKey="Salamon, P" uniqKey="Salamon P">P Salamon</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name></author><author><name sortKey="Salamon, P" uniqKey="Salamon P">P Salamon</name></author><author><name sortKey="Andresen, B" uniqKey="Andresen B">B Andresen</name></author><author><name sortKey="Mahaffy, Jm" uniqKey="Mahaffy J">JM Mahaffy</name></author><author><name sortKey="Segall, Am" uniqKey="Segall A">AM Segall</name></author><author><name sortKey="Mead, D" uniqKey="Mead D">D Mead</name></author><author><name sortKey="Azam, F" uniqKey="Azam F">F Azam</name></author><author><name sortKey="Rohwer, F" uniqKey="Rohwer F">F Rohwer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Culley, Ai" uniqKey="Culley A">AI Culley</name></author><author><name sortKey="Lang, As" uniqKey="Lang A">AS Lang</name></author><author><name sortKey="Suttle, Ca" uniqKey="Suttle C">CA Suttle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bench, Sr" uniqKey="Bench S">SR Bench</name></author><author><name sortKey="Hanson, Te" uniqKey="Hanson T">TE Hanson</name></author><author><name sortKey="Williamson, Ke" uniqKey="Williamson K">KE Williamson</name></author><author><name sortKey="Ghosh, D" uniqKey="Ghosh D">D Ghosh</name></author><author><name sortKey="Radosovich, M" uniqKey="Radosovich M">M Radosovich</name></author><author><name sortKey="Wang, K" uniqKey="Wang K">K Wang</name></author><author><name sortKey="Wommack, Ke" uniqKey="Wommack K">KE Wommack</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cann, Aj" uniqKey="Cann 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uniqKey="Federhen S">S Federhen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name></author><author><name sortKey="Copley, Rr" uniqKey="Copley R">RR Copley</name></author><author><name sortKey="Pils, B" uniqKey="Pils B">B Pils</name></author><author><name sortKey="Pinkert, S" uniqKey="Pinkert S">S Pinkert</name></author><author><name sortKey="Schultz, J" uniqKey="Schultz J">J Schultz</name></author><author><name sortKey="Bork, P" uniqKey="Bork P">P Bork</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tatusov, Rl" uniqKey="Tatusov R">RL Tatusov</name></author><author><name sortKey="Fedorova, Nd" uniqKey="Fedorova N">ND Fedorova</name></author><author><name sortKey="Jackson, Jd" uniqKey="Jackson J">JD Jackson</name></author><author><name sortKey="Jacobs, Ar" uniqKey="Jacobs A">AR Jacobs</name></author><author><name sortKey="Kiryutin, B" uniqKey="Kiryutin B">B Kiryutin</name></author><author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name></author><author><name sortKey="Krylov, Dm" uniqKey="Krylov D">DM Krylov</name></author><author><name sortKey="Mazumder, R" uniqKey="Mazumder R">R Mazumder</name></author><author><name sortKey="Mekhedov, Sl" uniqKey="Mekhedov S">SL Mekhedov</name></author><author><name sortKey="Nikolskaya, An" uniqKey="Nikolskaya A">AN Nikolskaya</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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