Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia
Identifieur interne : 000314 ( Main/Merge ); précédent : 000313; suivant : 000315Microbial Life in a Fjord: Metagenomic Analysis of a Microbial Mat in Chilean Patagonia
Auteurs : Juan A. Ugalde [États-Unis] ; Maria J. Gallardo [Chili] ; Camila Belmar [Chili] ; Práxedes Mu Oz [Chili] ; Nathaly Ruiz-Tagle [Chili] ; Sandra Ferrada-Fuentes [Chili] ; Carola Espinoza [Chili] ; Eric E. Allen [États-Unis] ; Victor A. Gallardo [Chili]Source :
- PLoS ONE [ 1932-6203 ] ; 2013.
Abstract
The current study describes the taxonomic and functional composition of metagenomic sequences obtained from a filamentous microbial mat isolated from the Comau fjord, located in the northernmost part of the Chilean Patagonia. The taxonomic composition of the microbial community showed a high proportion of members of the
Url:
DOI: 10.1371/journal.pone.0071952
PubMed: 24015199
PubMed Central: 3756073
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Allen</name><affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="aff9"><addr-line>Division of Biological Sciences, University of California San Diego, La Jolla, California, United States of America</addr-line></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Division of Biological Sciences, University of California San Diego, La Jolla, California</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Gallardo, Victor A" sort="Gallardo, Victor A" uniqKey="Gallardo V" first="Victor A." last="Gallardo">Victor A. Gallardo</name><affiliation wicri:level="1"><nlm:aff id="aff8"><addr-line>Laboratorio de Bentos, Departamento de Oceanografía, Universidad de Concepción, Concepcion, Chile</addr-line></nlm:aff><country xml:lang="fr">Chili</country><wicri:regionArea>Laboratorio de Bentos, Departamento de Oceanografía, Universidad de Concepción, Concepcion</wicri:regionArea><wicri:noRegion>Concepcion</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The current study describes the taxonomic and functional composition of metagenomic sequences obtained from a filamentous microbial mat isolated from the Comau fjord, located in the northernmost part of the Chilean Patagonia. The taxonomic composition of the microbial community showed a high proportion of members of the <italic><named-content content-type="order">Gammaproteobacteria</named-content></italic>, including a high number of sequences that were recruited to the genomes of <italic><named-content content-type="genus-species">Moritella marina</named-content></italic> MP-1 and <named-content content-type="genus-species"><named-content content-type="genus">Colwellia</named-content><italic><named-content content-type="species">psycherythraea</named-content></italic></named-content> 34H, suggesting the presence of populations related to these two psychrophilic bacterial species. Functional analysis of the community indicated a high proportion of genes coding for the transport and metabolism of amino acids, as well as in energy production. Among the energy production functions, we found protein-coding genes for sulfate and nitrate reduction, both processes associated with <italic><named-content content-type="order">Gammaproteobacteria</named-content></italic>-related sequences. This report provides the first examination of the taxonomic composition and genetic diversity associated with these conspicuous microbial mat communities and provides a framework for future microbial studies in the Comau fjord.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Sobarzo, M" uniqKey="Sobarzo M">M Sobarzo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Silva, N" uniqKey="Silva N">N Silva</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hauser, A" uniqKey="Hauser A">A Hauser</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="H Ussermann, V" uniqKey="H Ussermann V">V Häussermann</name></author><author><name sortKey="Forsterra, G" uniqKey="Forsterra G">G Försterra</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kalanetra, Km" uniqKey="Kalanetra K">KM 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Clarke</name></author><author><name sortKey="Cockell, Cs" uniqKey="Cockell C">CS Cockell</name></author><author><name sortKey="Convey, P" uniqKey="Convey P">P Convey</name></author><author><name sortKey="Detrich, Hw" uniqKey="Detrich H">HW Detrich</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanchez, N" uniqKey="Sanchez N">N Sanchez</name></author><author><name sortKey="Gonzalez, He" uniqKey="Gonzalez H">HE González</name></author><author><name sortKey="Iriarte, Jl" uniqKey="Iriarte J">JL Iriarte</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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