Serveur d'exploration Cyberinfrastructure

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

MouseBook: an integrated portal of mouse resources

Identifieur interne : 000B91 ( Main/Exploration ); précédent : 000B90; suivant : 000B92

MouseBook: an integrated portal of mouse resources

Auteurs : Andrew Blake ; Karen Pickford ; Simon Greenaway ; Steve Thomas ; Amanda Pickard ; Christine M. Williamson ; Niels C. Adams ; Alison Walling ; Tim Beck ; Martin Fray ; Jo Peters ; Tom Weaver ; Steve D. M. Brown ; John M. Hancock ; Ann-Marie Mallon

Source :

RBID : PMC:2808969

Abstract

The MouseBook (http://www.mousebook.org) databases and web portal provide access to information about mutant mouse lines held as live or cryopreserved stocks at MRC Harwell. The MouseBook portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide value-added information above and beyond what is available through other routes such as International Mouse Stain Resource (IMSR). MouseBook can be searched either using an intuitive Google style free text search or using the Mammalian Phenotype (MP) ontology tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual result lines from each catalog include information on gene, allele, chromosomal location and phenotype, and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added and enabling other sites to make their data directly available through MouseBook.


Url:
DOI: 10.1093/nar/gkp867
PubMed: 19854936
PubMed Central: 2808969


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">MouseBook: an integrated portal of mouse resources</title>
<author>
<name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name>
</author>
<author>
<name sortKey="Pickford, Karen" sort="Pickford, Karen" uniqKey="Pickford K" first="Karen" last="Pickford">Karen Pickford</name>
</author>
<author>
<name sortKey="Greenaway, Simon" sort="Greenaway, Simon" uniqKey="Greenaway S" first="Simon" last="Greenaway">Simon Greenaway</name>
</author>
<author>
<name sortKey="Thomas, Steve" sort="Thomas, Steve" uniqKey="Thomas S" first="Steve" last="Thomas">Steve Thomas</name>
</author>
<author>
<name sortKey="Pickard, Amanda" sort="Pickard, Amanda" uniqKey="Pickard A" first="Amanda" last="Pickard">Amanda Pickard</name>
</author>
<author>
<name sortKey="Williamson, Christine M" sort="Williamson, Christine M" uniqKey="Williamson C" first="Christine M." last="Williamson">Christine M. Williamson</name>
</author>
<author>
<name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name>
</author>
<author>
<name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name>
</author>
<author>
<name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name>
</author>
<author>
<name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name>
</author>
<author>
<name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name>
</author>
<author>
<name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name>
</author>
<author>
<name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name>
</author>
<author>
<name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name>
</author>
<author>
<name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">19854936</idno>
<idno type="pmc">2808969</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808969</idno>
<idno type="RBID">PMC:2808969</idno>
<idno type="doi">10.1093/nar/gkp867</idno>
<date when="2009">2009</date>
<idno type="wicri:Area/Pmc/Corpus">000577</idno>
<idno type="wicri:Area/Pmc/Curation">000577</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000626</idno>
<idno type="wicri:Area/Ncbi/Merge">000113</idno>
<idno type="wicri:Area/Ncbi/Curation">000113</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000113</idno>
<idno type="wicri:doubleKey">0305-1048:2009:Blake A:mousebook:an:integrated</idno>
<idno type="wicri:Area/Main/Merge">000B97</idno>
<idno type="wicri:Area/Main/Curation">000B91</idno>
<idno type="wicri:Area/Main/Exploration">000B91</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">MouseBook: an integrated portal of mouse resources</title>
<author>
<name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name>
</author>
<author>
<name sortKey="Pickford, Karen" sort="Pickford, Karen" uniqKey="Pickford K" first="Karen" last="Pickford">Karen Pickford</name>
</author>
<author>
<name sortKey="Greenaway, Simon" sort="Greenaway, Simon" uniqKey="Greenaway S" first="Simon" last="Greenaway">Simon Greenaway</name>
</author>
<author>
<name sortKey="Thomas, Steve" sort="Thomas, Steve" uniqKey="Thomas S" first="Steve" last="Thomas">Steve Thomas</name>
</author>
<author>
<name sortKey="Pickard, Amanda" sort="Pickard, Amanda" uniqKey="Pickard A" first="Amanda" last="Pickard">Amanda Pickard</name>
</author>
<author>
<name sortKey="Williamson, Christine M" sort="Williamson, Christine M" uniqKey="Williamson C" first="Christine M." last="Williamson">Christine M. Williamson</name>
</author>
<author>
<name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name>
</author>
<author>
<name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name>
</author>
<author>
<name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name>
</author>
<author>
<name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name>
</author>
<author>
<name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name>
</author>
<author>
<name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name>
</author>
<author>
<name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name>
</author>
<author>
<name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name>
</author>
<author>
<name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name>
</author>
</analytic>
<series>
<title level="j">Nucleic Acids Research</title>
<idno type="ISSN">0305-1048</idno>
<idno type="eISSN">1362-4962</idno>
<imprint>
<date when="2009">2009</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>The MouseBook (
<ext-link ext-link-type="uri" xlink:href="http://www.mousebook.org">http://www.mousebook.org</ext-link>
) databases and web portal provide access to information about mutant mouse lines held as live or cryopreserved stocks at MRC Harwell. The MouseBook portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide value-added information above and beyond what is available through other routes such as International Mouse Stain Resource (IMSR). MouseBook can be searched either using an intuitive Google style free text search or using the Mammalian Phenotype (MP) ontology tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual result lines from each catalog include information on gene, allele, chromosomal location and phenotype, and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added and enabling other sites to make their data directly available through MouseBook.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Rosenthal, N" uniqKey="Rosenthal N">N Rosenthal</name>
</author>
<author>
<name sortKey="Brown, S" uniqKey="Brown S">S Brown</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Waterston, Rh" uniqKey="Waterston R">RH Waterston</name>
</author>
<author>
<name sortKey="Lindblad Toh, K" uniqKey="Lindblad Toh K">K Lindblad-Toh</name>
</author>
<author>
<name sortKey="Birney, E" uniqKey="Birney E">E Birney</name>
</author>
<author>
<name sortKey="Rogers, J" uniqKey="Rogers J">J Rogers</name>
</author>
<author>
<name sortKey="Abril, Jf" uniqKey="Abril J">JF Abril</name>
</author>
<author>
<name sortKey="Agarwal, P" uniqKey="Agarwal P">P Agarwal</name>
</author>
<author>
<name sortKey="Agarwala, R" uniqKey="Agarwala R">R Agarwala</name>
</author>
<author>
<name sortKey="Ainscough, R" uniqKey="Ainscough R">R Ainscough</name>
</author>
<author>
<name sortKey="Alexandersson, M" uniqKey="Alexandersson M">M Alexandersson</name>
</author>
<author>
<name sortKey="An, P" uniqKey="An P">P An</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Brown, Sd" uniqKey="Brown S">SD Brown</name>
</author>
<author>
<name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
<author>
<name sortKey="Gates, H" uniqKey="Gates H">H Gates</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
<author>
<name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Stein, L" uniqKey="Stein L">L Stein</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Stein, Ld" uniqKey="Stein L">LD Stein</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Smedley, D" uniqKey="Smedley D">D Smedley</name>
</author>
<author>
<name sortKey="Swertz, Ma" uniqKey="Swertz M">MA Swertz</name>
</author>
<author>
<name sortKey="Wolstencroft, K" uniqKey="Wolstencroft K">K Wolstencroft</name>
</author>
<author>
<name sortKey="Proctor, G" uniqKey="Proctor G">G Proctor</name>
</author>
<author>
<name sortKey="Zouberakis, M" uniqKey="Zouberakis M">M Zouberakis</name>
</author>
<author>
<name sortKey="Bard, J" uniqKey="Bard J">J Bard</name>
</author>
<author>
<name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
<author>
<name sortKey="Schofield, P" uniqKey="Schofield P">P Schofield</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name>
</author>
<author>
<name sortKey="Strivens, M" uniqKey="Strivens M">M Strivens</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Collins, Fs" uniqKey="Collins F">FS Collins</name>
</author>
<author>
<name sortKey="Rossant, J" uniqKey="Rossant J">J Rossant</name>
</author>
<author>
<name sortKey="Wurst, W" uniqKey="Wurst W">W Wurst</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Hagn, M" uniqKey="Hagn M">M Hagn</name>
</author>
<author>
<name sortKey="Marschall, S" uniqKey="Marschall S">S Marschall</name>
</author>
<author>
<name sortKey="Hrabe De Angelis, M" uniqKey="Hrabe De Angelis M">M Hrabe de Angelis</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Blake, Ja" uniqKey="Blake J">JA Blake</name>
</author>
<author>
<name sortKey="Bult, Cj" uniqKey="Bult C">CJ Bult</name>
</author>
<author>
<name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name>
</author>
<author>
<name sortKey="Kadin, Ja" uniqKey="Kadin J">JA Kadin</name>
</author>
<author>
<name sortKey="Richardson, Je" uniqKey="Richardson J">JE Richardson</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Smith, Cl" uniqKey="Smith C">CL Smith</name>
</author>
<author>
<name sortKey="Goldsmith, Ca" uniqKey="Goldsmith C">CA Goldsmith</name>
</author>
<author>
<name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name>
</author>
<author>
<name sortKey="Blake, A" uniqKey="Blake A">A Blake</name>
</author>
<author>
<name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Gkoutos, Gv" uniqKey="Gkoutos G">GV Gkoutos</name>
</author>
<author>
<name sortKey="Green, Ec" uniqKey="Green E">EC Green</name>
</author>
<author>
<name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name>
</author>
<author>
<name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
<author>
<name sortKey="Davidson, D" uniqKey="Davidson D">D Davidson</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Hubbard, Tj" uniqKey="Hubbard T">TJ Hubbard</name>
</author>
<author>
<name sortKey="Aken, Bl" uniqKey="Aken B">BL Aken</name>
</author>
<author>
<name sortKey="Ayling, S" uniqKey="Ayling S">S Ayling</name>
</author>
<author>
<name sortKey="Ballester, B" uniqKey="Ballester B">B Ballester</name>
</author>
<author>
<name sortKey="Beal, K" uniqKey="Beal K">K Beal</name>
</author>
<author>
<name sortKey="Bragin, E" uniqKey="Bragin E">E Bragin</name>
</author>
<author>
<name sortKey="Brent, S" uniqKey="Brent S">S Brent</name>
</author>
<author>
<name sortKey="Chen, Y" uniqKey="Chen Y">Y Chen</name>
</author>
<author>
<name sortKey="Clapham, P" uniqKey="Clapham P">P Clapham</name>
</author>
<author>
<name sortKey="Clarke, L" uniqKey="Clarke L">L Clarke</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Cote, Rg" uniqKey="Cote R">RG Cote</name>
</author>
<author>
<name sortKey="Jones, P" uniqKey="Jones P">P Jones</name>
</author>
<author>
<name sortKey="Martens, L" uniqKey="Martens L">L Martens</name>
</author>
<author>
<name sortKey="Apweiler, R" uniqKey="Apweiler R">R Apweiler</name>
</author>
<author>
<name sortKey="Hermjakob, H" uniqKey="Hermjakob H">H Hermjakob</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Peters, J" uniqKey="Peters J">J Peters</name>
</author>
<author>
<name sortKey="Holmes, R" uniqKey="Holmes R">R Holmes</name>
</author>
<author>
<name sortKey="Monk, D" uniqKey="Monk D">D Monk</name>
</author>
<author>
<name sortKey="Beechey, Cv" uniqKey="Beechey C">CV Beechey</name>
</author>
<author>
<name sortKey="Moore, Ge" uniqKey="Moore G">GE Moore</name>
</author>
<author>
<name sortKey="Williamson, Cm" uniqKey="Williamson C">CM Williamson</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations>
<list></list>
<tree>
<noCountry>
<name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name>
<name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name>
<name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name>
<name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name>
<name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name>
<name sortKey="Greenaway, Simon" sort="Greenaway, Simon" uniqKey="Greenaway S" first="Simon" last="Greenaway">Simon Greenaway</name>
<name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name>
<name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name>
<name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name>
<name sortKey="Pickard, Amanda" sort="Pickard, Amanda" uniqKey="Pickard A" first="Amanda" last="Pickard">Amanda Pickard</name>
<name sortKey="Pickford, Karen" sort="Pickford, Karen" uniqKey="Pickford K" first="Karen" last="Pickford">Karen Pickford</name>
<name sortKey="Thomas, Steve" sort="Thomas, Steve" uniqKey="Thomas S" first="Steve" last="Thomas">Steve Thomas</name>
<name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name>
<name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name>
<name sortKey="Williamson, Christine M" sort="Williamson, Christine M" uniqKey="Williamson C" first="Christine M." last="Williamson">Christine M. Williamson</name>
</noCountry>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000B91 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000B91 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:2808969
   |texte=   MouseBook: an integrated portal of mouse resources
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:19854936" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1 

Wicri

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024