MouseBook: an integrated portal of mouse resources
Identifieur interne : 000113 ( Ncbi/Merge ); précédent : 000112; suivant : 000114MouseBook: an integrated portal of mouse resources
Auteurs : Andrew Blake ; Karen Pickford ; Simon Greenaway ; Steve Thomas ; Amanda Pickard ; Christine M. Williamson ; Niels C. Adams ; Alison Walling ; Tim Beck ; Martin Fray ; Jo Peters ; Tom Weaver ; Steve D. M. Brown ; John M. Hancock ; Ann-Marie MallonSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2009.
Abstract
The MouseBook (
Url:
DOI: 10.1093/nar/gkp867
PubMed: 19854936
PubMed Central: 2808969
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PMC:2808969Le document en format XML
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Williamson</name></author><author><name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name></author><author><name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name></author><author><name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name></author><author><name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name></author><author><name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name></author><author><name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name></author><author><name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name></author><author><name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name></author><author><name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">19854936</idno><idno type="pmc">2808969</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808969</idno><idno type="RBID">PMC:2808969</idno><idno type="doi">10.1093/nar/gkp867</idno><date when="2009">2009</date><idno type="wicri:Area/Pmc/Corpus">000577</idno><idno type="wicri:Area/Pmc/Curation">000577</idno><idno type="wicri:Area/Pmc/Checkpoint">000626</idno><idno type="wicri:Area/Ncbi/Merge">000113</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">MouseBook: an integrated portal of mouse resources</title><author><name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name></author><author><name sortKey="Pickford, Karen" sort="Pickford, Karen" uniqKey="Pickford K" first="Karen" last="Pickford">Karen Pickford</name></author><author><name sortKey="Greenaway, Simon" sort="Greenaway, Simon" uniqKey="Greenaway S" first="Simon" last="Greenaway">Simon Greenaway</name></author><author><name sortKey="Thomas, Steve" sort="Thomas, Steve" uniqKey="Thomas S" first="Steve" last="Thomas">Steve Thomas</name></author><author><name sortKey="Pickard, Amanda" sort="Pickard, Amanda" uniqKey="Pickard A" first="Amanda" last="Pickard">Amanda Pickard</name></author><author><name sortKey="Williamson, Christine M" sort="Williamson, Christine M" uniqKey="Williamson C" first="Christine M." last="Williamson">Christine M. Williamson</name></author><author><name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name></author><author><name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name></author><author><name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name></author><author><name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name></author><author><name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name></author><author><name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name></author><author><name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name></author><author><name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name></author><author><name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The MouseBook (<ext-link ext-link-type="uri" xlink:href="http://www.mousebook.org">http://www.mousebook.org</ext-link>) databases and web portal provide access to information about mutant mouse lines held as live or cryopreserved stocks at MRC Harwell. The MouseBook portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide value-added information above and beyond what is available through other routes such as International Mouse Stain Resource (IMSR). MouseBook can be searched either using an intuitive Google style free text search or using the Mammalian Phenotype (MP) ontology tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual result lines from each catalog include information on gene, allele, chromosomal location and phenotype, and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added and enabling other sites to make their data directly available through MouseBook.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Rosenthal, N" uniqKey="Rosenthal N">N Rosenthal</name></author><author><name sortKey="Brown, S" uniqKey="Brown S">S Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Waterston, Rh" uniqKey="Waterston R">RH Waterston</name></author><author><name sortKey="Lindblad Toh, K" uniqKey="Lindblad Toh K">K Lindblad-Toh</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author><author><name sortKey="Rogers, J" uniqKey="Rogers J">J Rogers</name></author><author><name sortKey="Abril, Jf" uniqKey="Abril J">JF Abril</name></author><author><name sortKey="Agarwal, P" uniqKey="Agarwal P">P Agarwal</name></author><author><name sortKey="Agarwala, R" uniqKey="Agarwala R">R Agarwala</name></author><author><name sortKey="Ainscough, R" uniqKey="Ainscough R">R Ainscough</name></author><author><name sortKey="Alexandersson, M" uniqKey="Alexandersson M">M Alexandersson</name></author><author><name sortKey="An, P" uniqKey="An P">P An</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Brown, Sd" uniqKey="Brown S">SD Brown</name></author><author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name></author><author><name sortKey="Gates, H" uniqKey="Gates H">H Gates</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name></author><author><name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Stein, L" uniqKey="Stein L">L Stein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stein, Ld" uniqKey="Stein L">LD Stein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smedley, D" uniqKey="Smedley D">D Smedley</name></author><author><name sortKey="Swertz, Ma" uniqKey="Swertz M">MA Swertz</name></author><author><name sortKey="Wolstencroft, K" uniqKey="Wolstencroft K">K Wolstencroft</name></author><author><name sortKey="Proctor, G" uniqKey="Proctor G">G Proctor</name></author><author><name sortKey="Zouberakis, M" uniqKey="Zouberakis M">M Zouberakis</name></author><author><name sortKey="Bard, J" uniqKey="Bard J">J Bard</name></author><author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name></author><author><name sortKey="Schofield, P" uniqKey="Schofield P">P Schofield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name></author><author><name sortKey="Strivens, M" uniqKey="Strivens M">M Strivens</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Collins, Fs" uniqKey="Collins F">FS Collins</name></author><author><name sortKey="Rossant, J" uniqKey="Rossant J">J Rossant</name></author><author><name sortKey="Wurst, W" uniqKey="Wurst W">W Wurst</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Hagn, M" uniqKey="Hagn M">M Hagn</name></author><author><name sortKey="Marschall, S" uniqKey="Marschall S">S Marschall</name></author><author><name sortKey="Hrabe De Angelis, M" uniqKey="Hrabe De Angelis M">M Hrabe de Angelis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Blake, Ja" uniqKey="Blake J">JA Blake</name></author><author><name sortKey="Bult, Cj" uniqKey="Bult C">CJ Bult</name></author><author><name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name></author><author><name sortKey="Kadin, Ja" uniqKey="Kadin J">JA Kadin</name></author><author><name sortKey="Richardson, Je" uniqKey="Richardson J">JE Richardson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, Cl" uniqKey="Smith C">CL Smith</name></author><author><name sortKey="Goldsmith, Ca" uniqKey="Goldsmith C">CA Goldsmith</name></author><author><name sortKey="Eppig, Jt" uniqKey="Eppig J">JT Eppig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name></author><author><name sortKey="Blake, A" uniqKey="Blake A">A Blake</name></author><author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gkoutos, Gv" uniqKey="Gkoutos G">GV Gkoutos</name></author><author><name sortKey="Green, Ec" uniqKey="Green E">EC Green</name></author><author><name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name></author><author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name></author><author><name sortKey="Davidson, D" uniqKey="Davidson D">D Davidson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hubbard, Tj" uniqKey="Hubbard T">TJ Hubbard</name></author><author><name sortKey="Aken, Bl" uniqKey="Aken B">BL Aken</name></author><author><name sortKey="Ayling, S" uniqKey="Ayling S">S Ayling</name></author><author><name sortKey="Ballester, B" uniqKey="Ballester B">B Ballester</name></author><author><name sortKey="Beal, K" uniqKey="Beal K">K Beal</name></author><author><name sortKey="Bragin, E" uniqKey="Bragin E">E Bragin</name></author><author><name sortKey="Brent, S" uniqKey="Brent S">S Brent</name></author><author><name sortKey="Chen, Y" uniqKey="Chen Y">Y Chen</name></author><author><name sortKey="Clapham, P" uniqKey="Clapham P">P Clapham</name></author><author><name sortKey="Clarke, L" uniqKey="Clarke L">L Clarke</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Cote, Rg" uniqKey="Cote R">RG Cote</name></author><author><name sortKey="Jones, P" uniqKey="Jones P">P Jones</name></author><author><name sortKey="Martens, L" uniqKey="Martens L">L Martens</name></author><author><name sortKey="Apweiler, R" uniqKey="Apweiler R">R Apweiler</name></author><author><name sortKey="Hermjakob, H" uniqKey="Hermjakob H">H Hermjakob</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Peters, J" uniqKey="Peters J">J Peters</name></author><author><name sortKey="Holmes, R" uniqKey="Holmes R">R Holmes</name></author><author><name sortKey="Monk, D" uniqKey="Monk D">D Monk</name></author><author><name sortKey="Beechey, Cv" uniqKey="Beechey C">CV Beechey</name></author><author><name sortKey="Moore, Ge" uniqKey="Moore G">GE Moore</name></author><author><name sortKey="Williamson, Cm" uniqKey="Williamson C">CM Williamson</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Nucleic Acids Res</journal-id><journal-id journal-id-type="iso-abbrev">Nucleic Acids Res</journal-id><journal-id journal-id-type="publisher-id">nar</journal-id><journal-id journal-id-type="hwp">nar</journal-id><journal-title-group><journal-title>Nucleic Acids Research</journal-title></journal-title-group><issn pub-type="ppub">0305-1048</issn><issn pub-type="epub">1362-4962</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">19854936</article-id><article-id pub-id-type="pmc">2808969</article-id><article-id pub-id-type="doi">10.1093/nar/gkp867</article-id><article-id pub-id-type="publisher-id">gkp867</article-id><article-categories><subj-group subj-group-type="heading"><subject>Articles</subject></subj-group></article-categories><title-group><article-title>MouseBook: an integrated portal of mouse resources</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Blake</surname><given-names>Andrew</given-names></name></contrib><contrib contrib-type="author"><name><surname>Pickford</surname><given-names>Karen</given-names></name></contrib><contrib contrib-type="author"><name><surname>Greenaway</surname><given-names>Simon</given-names></name></contrib><contrib contrib-type="author"><name><surname>Thomas</surname><given-names>Steve</given-names></name></contrib><contrib contrib-type="author"><name><surname>Pickard</surname><given-names>Amanda</given-names></name></contrib><contrib contrib-type="author"><name><surname>Williamson</surname><given-names>Christine M.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Adams</surname><given-names>Niels C.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Walling</surname><given-names>Alison</given-names></name></contrib><contrib contrib-type="author"><name><surname>Beck</surname><given-names>Tim</given-names></name></contrib><contrib contrib-type="author"><name><surname>Fray</surname><given-names>Martin</given-names></name></contrib><contrib contrib-type="author"><name><surname>Peters</surname><given-names>Jo</given-names></name></contrib><contrib contrib-type="author"><name><surname>Weaver</surname><given-names>Tom</given-names></name></contrib><contrib contrib-type="author"><name><surname>Brown</surname><given-names>Steve D. M.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Hancock</surname><given-names>John M.</given-names></name></contrib><contrib contrib-type="author"><name><surname>Mallon</surname><given-names>Ann-Marie</given-names></name><xref ref-type="corresp" rid="COR1">*</xref></contrib></contrib-group><aff>MRC Harwell, Mammalian Genetics Unit and the Mary Lyon Centre, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK</aff><author-notes><corresp id="COR1">*To whom correspondence should be addressed. Tel: +44 01235 525278; Fax: +44 01235 841210; Email: <email>a.mallon@har.mrc.ac.uk</email></corresp></author-notes><pub-date pub-type="ppub"><month>1</month><year>2010</year></pub-date><pub-date pub-type="epub"><day>23</day><month>10</month><year>2009</year></pub-date><pub-date pub-type="pmc-release"><day>23</day><month>10</month><year>2009</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>38</volume><issue>Database issue</issue><issue-title>Database issue</issue-title><fpage>D593</fpage><lpage>D599</lpage><history><date date-type="received"><day>14</day><month>8</month><year>2009</year></date><date date-type="accepted"><day>28</day><month>9</month><year>2009</year></date></history><permissions><copyright-statement>© The Author(s) 2009. Published by Oxford University Press.</copyright-statement><copyright-year>2009</copyright-year><license license-type="creative-commons" xlink:href="http://creativecommons.org/licenses/by-nc/2.5/uk/"><license-p><pmc-comment>CREATIVE COMMONS</pmc-comment>This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/2.5/uk/">http://creativecommons.org/licenses/by-nc/2.5/uk/</ext-link>) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p></license></permissions><abstract><p>The MouseBook (<ext-link ext-link-type="uri" xlink:href="http://www.mousebook.org">http://www.mousebook.org</ext-link>) databases and web portal provide access to information about mutant mouse lines held as live or cryopreserved stocks at MRC Harwell. The MouseBook portal integrates curated information from the MRC Harwell stock resource, and other Harwell databases, with information from external data resources to provide value-added information above and beyond what is available through other routes such as International Mouse Stain Resource (IMSR). MouseBook can be searched either using an intuitive Google style free text search or using the Mammalian Phenotype (MP) ontology tree structure. Text searches can be on gene, allele, strain identifier (e.g. MGI ID) or phenotype term and are assisted by automatic recognition of term types and autocompletion of gene and allele names covered by the database. Results are returned in a tabbed format providing categorized results identified from each of the catalogs in MouseBook. Individual result lines from each catalog include information on gene, allele, chromosomal location and phenotype, and provide a simple click-through link to further information as well as ordering the strain. The infrastructure underlying MouseBook has been designed to be extensible, allowing additional data sources to be added and enabling other sites to make their data directly available through MouseBook.</p></abstract></article-meta></front></pmc><affiliations><list></list><tree><noCountry><name sortKey="Adams, Niels C" sort="Adams, Niels C" uniqKey="Adams N" first="Niels C." last="Adams">Niels C. Adams</name><name sortKey="Beck, Tim" sort="Beck, Tim" uniqKey="Beck T" first="Tim" last="Beck">Tim Beck</name><name sortKey="Blake, Andrew" sort="Blake, Andrew" uniqKey="Blake A" first="Andrew" last="Blake">Andrew Blake</name><name sortKey="Brown, Steve D M" sort="Brown, Steve D M" uniqKey="Brown S" first="Steve D. M." last="Brown">Steve D. M. Brown</name><name sortKey="Fray, Martin" sort="Fray, Martin" uniqKey="Fray M" first="Martin" last="Fray">Martin Fray</name><name sortKey="Greenaway, Simon" sort="Greenaway, Simon" uniqKey="Greenaway S" first="Simon" last="Greenaway">Simon Greenaway</name><name sortKey="Hancock, John M" sort="Hancock, John M" uniqKey="Hancock J" first="John M." last="Hancock">John M. Hancock</name><name sortKey="Mallon, Ann Marie" sort="Mallon, Ann Marie" uniqKey="Mallon A" first="Ann-Marie" last="Mallon">Ann-Marie Mallon</name><name sortKey="Peters, Jo" sort="Peters, Jo" uniqKey="Peters J" first="Jo" last="Peters">Jo Peters</name><name sortKey="Pickard, Amanda" sort="Pickard, Amanda" uniqKey="Pickard A" first="Amanda" last="Pickard">Amanda Pickard</name><name sortKey="Pickford, Karen" sort="Pickford, Karen" uniqKey="Pickford K" first="Karen" last="Pickford">Karen Pickford</name><name sortKey="Thomas, Steve" sort="Thomas, Steve" uniqKey="Thomas S" first="Steve" last="Thomas">Steve Thomas</name><name sortKey="Walling, Alison" sort="Walling, Alison" uniqKey="Walling A" first="Alison" last="Walling">Alison Walling</name><name sortKey="Weaver, Tom" sort="Weaver, Tom" uniqKey="Weaver T" first="Tom" last="Weaver">Tom Weaver</name><name sortKey="Williamson, Christine M" sort="Williamson, Christine M" uniqKey="Williamson C" first="Christine M." last="Williamson">Christine M. Williamson</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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