The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis
Identifieur interne : 000170 ( Ncbi/Merge ); précédent : 000169; suivant : 000171The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis
Auteurs : Koenraad Van Doorslaer ; Qina Tan [États-Unis] ; Sandhya Xirasagar [États-Unis] ; Sandya Bandaru [États-Unis] ; Vivek Gopalan [États-Unis] ; Yasmin Mohamoud [États-Unis] ; Yentram Huyen [États-Unis] ; Alison A. McbrideSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2012.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Viral Proteins.
- genetics : Papillomaviridae, Viral Proteins.
- Databases, Genetic, Genome, Viral, Genomics, Internet, Molecular Sequence Annotation, Sequence Analysis, User-Computer Interface.
Abstract
The goal of the Papillomavirus Episteme (PaVE) is to provide an integrated resource for the analysis of papillomavirus (PV) genome sequences and related information. The PaVE is a freely accessible, web-based tool (
Url:
DOI: 10.1093/nar/gks984
PubMed: 23093593
PubMed Central: 3531071
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PMC:3531071Le document en format XML
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Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Gopalan, Vivek" sort="Gopalan, Vivek" uniqKey="Gopalan V" first="Vivek" last="Gopalan">Vivek Gopalan</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mohamoud, Yasmin" sort="Mohamoud, Yasmin" uniqKey="Mohamoud Y" first="Yasmin" last="Mohamoud">Yasmin Mohamoud</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Huyen, Yentram" sort="Huyen, Yentram" uniqKey="Huyen Y" first="Yentram" last="Huyen">Yentram Huyen</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mcbride, Alison A" sort="Mcbride, Alison A" uniqKey="Mcbride A" first="Alison A." last="Mcbride">Alison A. Mcbride</name><affiliation><nlm:aff wicri:cut=" and" id="gks984-AFF1">DNA Tumor Virus Section, Laboratory of Viral Diseases</nlm:aff><wicri:noCountry code="subfield">Laboratory of Viral Diseases</wicri:noCountry></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Genetic</term><term>Genome, Viral</term><term>Genomics</term><term>Internet</term><term>Molecular Sequence Annotation</term><term>Papillomaviridae (genetics)</term><term>Sequence Analysis</term><term>User-Computer Interface</term><term>Viral Proteins (chemistry)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence</term><term>Annotation de séquence moléculaire</term><term>Bases de données génétiques</term><term>Génome viral</term><term>Génomique</term><term>Interface utilisateur</term><term>Internet</term><term>Papillomaviridae (génétique)</term><term>Protéines virales ()</term><term>Protéines virales (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Papillomaviridae</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Papillomaviridae</term><term>Protéines virales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Genome, Viral</term><term>Genomics</term><term>Internet</term><term>Molecular Sequence Annotation</term><term>Sequence Analysis</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term><term>Annotation de séquence moléculaire</term><term>Bases de données génétiques</term><term>Génome viral</term><term>Génomique</term><term>Interface utilisateur</term><term>Internet</term><term>Protéines virales</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The goal of the Papillomavirus Episteme (PaVE) is to provide an integrated resource for the analysis of papillomavirus (PV) genome sequences and related information. The PaVE is a freely accessible, web-based tool (<ext-link ext-link-type="uri" xlink:href="http://pave.niaid.nih.gov">http://pave.niaid.nih.gov</ext-link>) created around a relational database, which enables storage, analysis and exchange of sequence information. From a design perspective, the PaVE adopts an Open Source software approach and stresses the integration and reuse of existing tools. Reference PV genome sequences have been extracted from publicly available databases and reannotated using a custom-created tool. To date, the PaVE contains 241 annotated PV genomes, 2245 genes and regions, 2004 protein sequences and 47 protein structures, which users can explore, analyze or download. The PaVE provides scientists with the data and tools needed to accelerate scientific progress for the study and treatment of diseases caused by PVs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="De Villiers, Em" uniqKey="De Villiers E">EM de Villiers</name></author><author><name sortKey="Fauquet, C" uniqKey="Fauquet C">C Fauquet</name></author><author><name sortKey="Broker, Tr" uniqKey="Broker T">TR Broker</name></author><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Zur Hausen, H" uniqKey="Zur Hausen H">H zur Hausen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van 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sortKey="Maes, P" uniqKey="Maes P">P Maes</name></author><author><name sortKey="Matthijnssens, J" uniqKey="Matthijnssens J">J Matthijnssens</name></author><author><name sortKey="Rahman, M" uniqKey="Rahman M">M Rahman</name></author><author><name sortKey="Van Ranst, M" uniqKey="Van Ranst M">M Van Ranst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wilkinson, De" uniqKey="Wilkinson D">DE Wilkinson</name></author><author><name sortKey="Baylis, Sa" uniqKey="Baylis S">SA Baylis</name></author><author><name sortKey="Padley, D" uniqKey="Padley D">D Padley</name></author><author><name sortKey="Heath, Ab" uniqKey="Heath A">AB Heath</name></author><author><name sortKey="Ferguson, M" uniqKey="Ferguson M">M Ferguson</name></author><author><name sortKey="Pagliusi, Sr" uniqKey="Pagliusi S">SR Pagliusi</name></author><author><name sortKey="Quint, Wg" uniqKey="Quint W">WG Quint</name></author><author><name sortKey="Wheeler, Cm" uniqKey="Wheeler C">CM Wheeler</name></author></analytic></biblStruct></listBibl></div1></back></TEI><double pmid="23093593"><pmc><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis</title><author><name sortKey="Van Doorslaer, Koenraad" sort="Van Doorslaer, Koenraad" uniqKey="Van Doorslaer K" first="Koenraad" last="Van Doorslaer">Koenraad Van Doorslaer</name><affiliation><nlm:aff wicri:cut=" and" id="gks984-AFF1">DNA Tumor Virus Section, Laboratory of Viral Diseases</nlm:aff><wicri:noCountry code="subfield">Laboratory of Viral Diseases</wicri:noCountry></affiliation></author><author><name sortKey="Tan, Qina" sort="Tan, Qina" uniqKey="Tan Q" first="Qina" last="Tan">Qina Tan</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Xirasagar, Sandhya" sort="Xirasagar, Sandhya" uniqKey="Xirasagar S" first="Sandhya" last="Xirasagar">Sandhya Xirasagar</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Bandaru, Sandya" sort="Bandaru, Sandya" uniqKey="Bandaru S" first="Sandya" last="Bandaru">Sandya Bandaru</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Gopalan, Vivek" sort="Gopalan, Vivek" uniqKey="Gopalan V" first="Vivek" last="Gopalan">Vivek Gopalan</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mohamoud, Yasmin" sort="Mohamoud, Yasmin" uniqKey="Mohamoud Y" first="Yasmin" last="Mohamoud">Yasmin Mohamoud</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Huyen, Yentram" sort="Huyen, Yentram" uniqKey="Huyen Y" first="Yentram" last="Huyen">Yentram Huyen</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mcbride, Alison A" sort="Mcbride, Alison A" uniqKey="Mcbride A" first="Alison A." last="Mcbride">Alison A. Mcbride</name><affiliation><nlm:aff wicri:cut=" and" id="gks984-AFF1">DNA Tumor Virus Section, Laboratory of Viral Diseases</nlm:aff><wicri:noCountry code="subfield">Laboratory of Viral Diseases</wicri:noCountry></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23093593</idno><idno type="pmc">3531071</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531071</idno><idno type="RBID">PMC:3531071</idno><idno type="doi">10.1093/nar/gks984</idno><date when="2012">2012</date><idno type="wicri:Area/Pmc/Corpus">000123</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000123</idno><idno type="wicri:Area/Pmc/Curation">000123</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000123</idno><idno type="wicri:Area/Pmc/Checkpoint">000087</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000087</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis</title><author><name sortKey="Van Doorslaer, Koenraad" sort="Van Doorslaer, Koenraad" uniqKey="Van Doorslaer K" first="Koenraad" last="Van Doorslaer">Koenraad Van Doorslaer</name><affiliation><nlm:aff wicri:cut=" and" id="gks984-AFF1">DNA Tumor Virus Section, Laboratory of Viral Diseases</nlm:aff><wicri:noCountry code="subfield">Laboratory of Viral Diseases</wicri:noCountry></affiliation></author><author><name sortKey="Tan, Qina" sort="Tan, Qina" uniqKey="Tan Q" first="Qina" last="Tan">Qina Tan</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Xirasagar, Sandhya" sort="Xirasagar, Sandhya" uniqKey="Xirasagar S" first="Sandhya" last="Xirasagar">Sandhya Xirasagar</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Bandaru, Sandya" sort="Bandaru, Sandya" uniqKey="Bandaru S" first="Sandya" last="Bandaru">Sandya Bandaru</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Gopalan, Vivek" sort="Gopalan, Vivek" uniqKey="Gopalan V" first="Vivek" last="Gopalan">Vivek Gopalan</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mohamoud, Yasmin" sort="Mohamoud, Yasmin" uniqKey="Mohamoud Y" first="Yasmin" last="Mohamoud">Yasmin Mohamoud</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Huyen, Yentram" sort="Huyen, Yentram" uniqKey="Huyen Y" first="Yentram" last="Huyen">Yentram Huyen</name><affiliation wicri:level="2"><nlm:aff id="gks984-AFF1">Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Mcbride, Alison A" sort="Mcbride, Alison A" uniqKey="Mcbride A" first="Alison A." last="Mcbride">Alison A. Mcbride</name><affiliation><nlm:aff wicri:cut=" and" id="gks984-AFF1">DNA Tumor Virus Section, Laboratory of Viral Diseases</nlm:aff><wicri:noCountry code="subfield">Laboratory of Viral Diseases</wicri:noCountry></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The goal of the Papillomavirus Episteme (PaVE) is to provide an integrated resource for the analysis of papillomavirus (PV) genome sequences and related information. The PaVE is a freely accessible, web-based tool (<ext-link ext-link-type="uri" xlink:href="http://pave.niaid.nih.gov">http://pave.niaid.nih.gov</ext-link>) created around a relational database, which enables storage, analysis and exchange of sequence information. From a design perspective, the PaVE adopts an Open Source software approach and stresses the integration and reuse of existing tools. Reference PV genome sequences have been extracted from publicly available databases and reannotated using a custom-created tool. To date, the PaVE contains 241 annotated PV genomes, 2245 genes and regions, 2004 protein sequences and 47 protein structures, which users can explore, analyze or download. The PaVE provides scientists with the data and tools needed to accelerate scientific progress for the study and treatment of diseases caused by PVs.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="De Villiers, Em" uniqKey="De Villiers E">EM de Villiers</name></author><author><name sortKey="Fauquet, C" uniqKey="Fauquet C">C Fauquet</name></author><author><name sortKey="Broker, Tr" uniqKey="Broker T">TR Broker</name></author><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Zur Hausen, H" uniqKey="Zur Hausen H">H zur Hausen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bernard, Hu" uniqKey="Bernard H">HU Bernard</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author><author><name sortKey="Chen, Z" uniqKey="Chen Z">Z Chen</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van Doorslaer</name></author><author><name sortKey="Zur Hausen, H" uniqKey="Zur Hausen H">H zur Hausen</name></author><author><name sortKey="De Villiers, Em" uniqKey="De Villiers E">EM de Villiers</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Trottier, H" uniqKey="Trottier H">H Trottier</name></author><author><name sortKey="Franco, El" uniqKey="Franco E">EL Franco</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bouvard, V" uniqKey="Bouvard V">V Bouvard</name></author><author><name sortKey="Baan, R" uniqKey="Baan R">R Baan</name></author><author><name sortKey="Straif, K" uniqKey="Straif K">K Straif</name></author><author><name sortKey="Grosse, Y" uniqKey="Grosse Y">Y Grosse</name></author><author><name sortKey="Secretan, B" uniqKey="Secretan B">B Secretan</name></author><author><name sortKey="El, Gf" uniqKey="El G">GF El</name></author><author><name sortKey="Benbrahim Tallaa, L" uniqKey="Benbrahim Tallaa L">L Benbrahim-Tallaa</name></author><author><name sortKey="Guha, N" uniqKey="Guha N">N Guha</name></author><author><name sortKey="Freeman, C" uniqKey="Freeman C">C Freeman</name></author><author><name sortKey="Galichet, L" uniqKey="Galichet L">L Galichet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Garcia Vallve, S" uniqKey="Garcia Vallve S">S Garcia-Vallve</name></author><author><name sortKey="Alonso, A" uniqKey="Alonso A">A Alonso</name></author><author><name sortKey="Bravo, Ig" uniqKey="Bravo I">IG Bravo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Klingelhutz, Aj" uniqKey="Klingelhutz A">AJ Klingelhutz</name></author><author><name sortKey="Roman, A" uniqKey="Roman A">A Roman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rector, A" uniqKey="Rector A">A Rector</name></author><author><name sortKey="Lemey, P" uniqKey="Lemey P">P Lemey</name></author><author><name sortKey="Tachezy, R" uniqKey="Tachezy R">R Tachezy</name></author><author><name sortKey="Mostmans, S" uniqKey="Mostmans S">S Mostmans</name></author><author><name sortKey="Ghim, Sj" uniqKey="Ghim S">SJ Ghim</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van Doorslaer</name></author><author><name sortKey="Roelke, M" uniqKey="Roelke M">M Roelke</name></author><author><name sortKey="Bush, M" uniqKey="Bush M">M Bush</name></author><author><name sortKey="Montali, Rj" uniqKey="Montali R">RJ Montali</name></author><author><name sortKey="Joslin, J" uniqKey="Joslin J">J Joslin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rector, A" uniqKey="Rector A">A Rector</name></author><author><name sortKey="Stevens, H" uniqKey="Stevens H">H Stevens</name></author><author><name sortKey="Lacave, G" uniqKey="Lacave G">G Lacave</name></author><author><name sortKey="Lemey, P" uniqKey="Lemey P">P Lemey</name></author><author><name sortKey="Mostmans, S" uniqKey="Mostmans S">S Mostmans</name></author><author><name sortKey="Salbany, A" uniqKey="Salbany A">A Salbany</name></author><author><name sortKey="Vos, M" uniqKey="Vos M">M Vos</name></author><author><name sortKey="Van Doorslaer, K" uniqKey="Van Doorslaer K">K Van Doorslaer</name></author><author><name sortKey="Ghim, Sj" uniqKey="Ghim S">SJ Ghim</name></author><author><name sortKey="Rehtanz, M" uniqKey="Rehtanz M">M Rehtanz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ho, L" uniqKey="Ho L">L Ho</name></author><author><name sortKey="Chan, Sy" uniqKey="Chan S">SY Chan</name></author><author><name sortKey="Burk, Rd" uniqKey="Burk R">RD Burk</name></author><author><name sortKey="Das, Bc" uniqKey="Das B">BC Das</name></author><author><name sortKey="Fujinaga, K" uniqKey="Fujinaga K">K Fujinaga</name></author><author><name sortKey="Icenogle, Jp" uniqKey="Icenogle J">JP Icenogle</name></author><author><name sortKey="Kahn, T" uniqKey="Kahn T">T Kahn</name></author><author><name sortKey="Kiviat, N" uniqKey="Kiviat N">N Kiviat</name></author><author><name sortKey="Lancaster, W" uniqKey="Lancaster W">W Lancaster</name></author><author><name sortKey="Mavromara Nazos, P" uniqKey="Mavromara Nazos P">P Mavromara-Nazos</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bao, Y" uniqKey="Bao Y">Y Bao</name></author><author><name sortKey="Federhen, S" uniqKey="Federhen S">S Federhen</name></author><author><name sortKey="Leipe, D" uniqKey="Leipe D">D Leipe</name></author><author><name sortKey="Pham, V" uniqKey="Pham V">V Pham</name></author><author><name sortKey="Resenchuk, S" uniqKey="Resenchuk S">S Resenchuk</name></author><author><name sortKey="Rozanov, M" uniqKey="Rozanov M">M Rozanov</name></author><author><name sortKey="Tatusova, R" uniqKey="Tatusova R">R Tatusova</name></author><author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T Tatusova</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, Sf" uniqKey="Altschul S">SF Altschul</name></author><author><name sortKey="Gish, W" uniqKey="Gish W">W Gish</name></author><author><name sortKey="Miller, W" uniqKey="Miller W">W Miller</name></author><author><name sortKey="Myers, Ew" uniqKey="Myers E">EW Myers</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Katoh, K" uniqKey="Katoh K">K Katoh</name></author><author><name sortKey="Misawa, K" uniqKey="Misawa K">K Misawa</name></author><author><name sortKey="Kuma, K" uniqKey="Kuma K">K Kuma</name></author><author><name sortKey="Miyata, T" uniqKey="Miyata T">T Miyata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meissner, Jd" uniqKey="Meissner J">JD Meissner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maes, P" uniqKey="Maes P">P Maes</name></author><author><name sortKey="Matthijnssens, J" uniqKey="Matthijnssens J">J Matthijnssens</name></author><author><name sortKey="Rahman, M" uniqKey="Rahman M">M Rahman</name></author><author><name sortKey="Van Ranst, M" uniqKey="Van Ranst M">M Van Ranst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wilkinson, De" uniqKey="Wilkinson D">DE Wilkinson</name></author><author><name sortKey="Baylis, Sa" uniqKey="Baylis S">SA Baylis</name></author><author><name sortKey="Padley, D" uniqKey="Padley D">D Padley</name></author><author><name sortKey="Heath, Ab" uniqKey="Heath A">AB Heath</name></author><author><name sortKey="Ferguson, M" uniqKey="Ferguson M">M Ferguson</name></author><author><name sortKey="Pagliusi, Sr" uniqKey="Pagliusi S">SR Pagliusi</name></author><author><name sortKey="Quint, Wg" uniqKey="Quint W">WG Quint</name></author><author><name sortKey="Wheeler, Cm" uniqKey="Wheeler C">CM Wheeler</name></author></analytic></biblStruct></listBibl></div1></back></TEI></pmc><pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis.</title><author><name sortKey="Van Doorslaer, Koenraad" sort="Van Doorslaer, Koenraad" uniqKey="Van Doorslaer K" first="Koenraad" last="Van Doorslaer">Koenraad Van Doorslaer</name><affiliation wicri:level="2"><nlm:affiliation>DNA Tumor Virus Section, Laboratory of Viral Diseases, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>DNA Tumor Virus Section, Laboratory of Viral Diseases, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Tan, Qina" sort="Tan, Qina" uniqKey="Tan Q" first="Qina" last="Tan">Qina Tan</name></author><author><name sortKey="Xirasagar, Sandhya" sort="Xirasagar, Sandhya" uniqKey="Xirasagar S" first="Sandhya" last="Xirasagar">Sandhya Xirasagar</name></author><author><name sortKey="Bandaru, Sandya" sort="Bandaru, Sandya" uniqKey="Bandaru S" first="Sandya" last="Bandaru">Sandya Bandaru</name></author><author><name sortKey="Gopalan, Vivek" sort="Gopalan, Vivek" uniqKey="Gopalan V" first="Vivek" last="Gopalan">Vivek Gopalan</name></author><author><name sortKey="Mohamoud, Yasmin" sort="Mohamoud, Yasmin" uniqKey="Mohamoud Y" first="Yasmin" last="Mohamoud">Yasmin Mohamoud</name></author><author><name sortKey="Huyen, Yentram" sort="Huyen, Yentram" uniqKey="Huyen Y" first="Yentram" last="Huyen">Yentram Huyen</name></author><author><name sortKey="Mcbride, Alison A" sort="Mcbride, Alison A" uniqKey="Mcbride A" first="Alison A" last="Mcbride">Alison A. Mcbride</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="doi">10.1093/nar/gks984</idno><idno type="RBID">pubmed:23093593</idno><idno type="pmid">23093593</idno><idno type="wicri:Area/PubMed/Corpus">000016</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000016</idno><idno type="wicri:Area/PubMed/Curation">000016</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000016</idno><idno type="wicri:Area/PubMed/Checkpoint">000016</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000016</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis.</title><author><name sortKey="Van Doorslaer, Koenraad" sort="Van Doorslaer, Koenraad" uniqKey="Van Doorslaer K" first="Koenraad" last="Van Doorslaer">Koenraad Van Doorslaer</name><affiliation wicri:level="2"><nlm:affiliation>DNA Tumor Virus Section, Laboratory of Viral Diseases, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>DNA Tumor Virus Section, Laboratory of Viral Diseases, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 209892</wicri:regionArea><placeName><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Tan, Qina" sort="Tan, Qina" uniqKey="Tan Q" first="Qina" last="Tan">Qina Tan</name></author><author><name sortKey="Xirasagar, Sandhya" sort="Xirasagar, Sandhya" uniqKey="Xirasagar S" first="Sandhya" last="Xirasagar">Sandhya Xirasagar</name></author><author><name sortKey="Bandaru, Sandya" sort="Bandaru, Sandya" uniqKey="Bandaru S" first="Sandya" last="Bandaru">Sandya Bandaru</name></author><author><name sortKey="Gopalan, Vivek" sort="Gopalan, Vivek" uniqKey="Gopalan V" first="Vivek" last="Gopalan">Vivek Gopalan</name></author><author><name sortKey="Mohamoud, Yasmin" sort="Mohamoud, Yasmin" uniqKey="Mohamoud Y" first="Yasmin" last="Mohamoud">Yasmin Mohamoud</name></author><author><name sortKey="Huyen, Yentram" sort="Huyen, Yentram" uniqKey="Huyen Y" first="Yentram" last="Huyen">Yentram Huyen</name></author><author><name sortKey="Mcbride, Alison A" sort="Mcbride, Alison A" uniqKey="Mcbride A" first="Alison A" last="Mcbride">Alison A. Mcbride</name></author></analytic><series><title level="j">Nucleic acids research</title><idno type="eISSN">1362-4962</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Databases, Genetic</term><term>Genome, Viral</term><term>Genomics</term><term>Internet</term><term>Molecular Sequence Annotation</term><term>Papillomaviridae (genetics)</term><term>Sequence Analysis</term><term>User-Computer Interface</term><term>Viral Proteins (chemistry)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence</term><term>Annotation de séquence moléculaire</term><term>Bases de données génétiques</term><term>Génome viral</term><term>Génomique</term><term>Interface utilisateur</term><term>Internet</term><term>Papillomaviridae (génétique)</term><term>Protéines virales ()</term><term>Protéines virales (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Papillomaviridae</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Papillomaviridae</term><term>Protéines virales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Genome, Viral</term><term>Genomics</term><term>Internet</term><term>Molecular Sequence Annotation</term><term>Sequence Analysis</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term><term>Annotation de séquence moléculaire</term><term>Bases de données génétiques</term><term>Génome viral</term><term>Génomique</term><term>Interface utilisateur</term><term>Internet</term><term>Protéines virales</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The goal of the Papillomavirus Episteme (PaVE) is to provide an integrated resource for the analysis of papillomavirus (PV) genome sequences and related information. The PaVE is a freely accessible, web-based tool (http://pave.niaid.nih.gov) created around a relational database, which enables storage, analysis and exchange of sequence information. From a design perspective, the PaVE adopts an Open Source software approach and stresses the integration and reuse of existing tools. Reference PV genome sequences have been extracted from publicly available databases and reannotated using a custom-created tool. To date, the PaVE contains 241 annotated PV genomes, 2245 genes and regions, 2004 protein sequences and 47 protein structures, which users can explore, analyze or download. The PaVE provides scientists with the data and tools needed to accelerate scientific progress for the study and treatment of diseases caused by PVs.</div></front></TEI></pubmed></double></record>Pour manipuler ce document sous Unix (Dilib)
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