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Marine Metagenomics: New Tools for the Study and Exploitation of Marine Microbial Metabolism

Identifieur interne : 000885 ( Main/Exploration ); précédent : 000884; suivant : 000886

Marine Metagenomics: New Tools for the Study and Exploitation of Marine Microbial Metabolism

Auteurs : Jonathan Kennedy ; Burkhardt Flemer ; Stephen A. Jackson ; David P. H. Lejon ; John P. Morrissey [Irlande (pays)] ; Fergal O Ara [Irlande (pays)] ; Alan D. W. Dobson [Irlande (pays)]

Source :

RBID : PMC:2857354

Abstract

The marine environment is extremely diverse, with huge variations in pressure and temperature. Nevertheless, life, especially microbial life, thrives throughout the marine biosphere and microbes have adapted to all the divergent environments present. Large scale DNA sequence based approaches have recently been used to investigate the marine environment and these studies have revealed that the oceans harbor unprecedented microbial diversity. Novel gene families with representatives only within such metagenomic datasets represent a large proportion of the ocean metagenome. The presence of so many new gene families from these uncultured and highly diverse microbial populations represents a challenge for the understanding of and exploitation of the biology and biochemistry of the ocean environment. The application of new metagenomic and single cell genomics tools offers new ways to explore the complete metabolic diversity of the marine biome.


Url:
DOI: 10.3390/md8030608
PubMed: 20411118
PubMed Central: 2857354


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<nlm:aff id="af1-marinedrugs-08-00608"> Marine Biotechnology Centre, Environmental Research Institute, University College Cork, Cork, Ireland; E-Mails:
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<p>The marine environment is extremely diverse, with huge variations in pressure and temperature. Nevertheless, life, especially microbial life, thrives throughout the marine biosphere and microbes have adapted to all the divergent environments present. Large scale DNA sequence based approaches have recently been used to investigate the marine environment and these studies have revealed that the oceans harbor unprecedented microbial diversity. Novel gene families with representatives only within such metagenomic datasets represent a large proportion of the ocean metagenome. The presence of so many new gene families from these uncultured and highly diverse microbial populations represents a challenge for the understanding of and exploitation of the biology and biochemistry of the ocean environment. The application of new metagenomic and single cell genomics tools offers new ways to explore the complete metabolic diversity of the marine biome.</p>
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<name sortKey="Li, X" uniqKey="Li X">X Li</name>
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<name sortKey="Chi, Z" uniqKey="Chi Z">Z Chi</name>
</author>
<author>
<name sortKey="Liu, Z" uniqKey="Liu Z">Z Liu</name>
</author>
<author>
<name sortKey="Li, J" uniqKey="Li J">J Li</name>
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<author>
<name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
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<author>
<name sortKey="Hirimuthugoda, Ny" uniqKey="Hirimuthugoda N">NY Hirimuthugoda</name>
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<analytic>
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<name sortKey="Zhang, R" uniqKey="Zhang R">R Zhang</name>
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<author>
<name sortKey="Zhao, J" uniqKey="Zhao J">J Zhao</name>
</author>
<author>
<name sortKey="Lin, N" uniqKey="Lin N">N Lin</name>
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</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Acevedo, Jp" uniqKey="Acevedo J">JP Acevedo</name>
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<author>
<name sortKey="Reyes, F" uniqKey="Reyes F">F Reyes</name>
</author>
<author>
<name sortKey="Parra, Lp" uniqKey="Parra L">LP Parra</name>
</author>
<author>
<name sortKey="Salazar, O" uniqKey="Salazar O">O Salazar</name>
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<author>
<name sortKey="Andrews, Ba" uniqKey="Andrews B">BA Andrews</name>
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<author>
<name sortKey="Asenjo, Ja" uniqKey="Asenjo J">JA Asenjo</name>
</author>
</analytic>
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<analytic>
<author>
<name sortKey="Chavez Croocker, P" uniqKey="Chavez Croocker P">P Chavez Croocker</name>
</author>
<author>
<name sortKey="Sako, Y" uniqKey="Sako Y">Y Sako</name>
</author>
<author>
<name sortKey="Uchida, A" uniqKey="Uchida A">A Uchida</name>
</author>
</analytic>
</biblStruct>
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<analytic>
<author>
<name sortKey="Collins, T" uniqKey="Collins T">T Collins</name>
</author>
<author>
<name sortKey="Meuwis, Ma" uniqKey="Meuwis M">MA Meuwis</name>
</author>
<author>
<name sortKey="Stals, I" uniqKey="Stals I">I Stals</name>
</author>
<author>
<name sortKey="Claeyssens, M" uniqKey="Claeyssens M">M Claeyssens</name>
</author>
<author>
<name sortKey="Feller, G" uniqKey="Feller G">G Feller</name>
</author>
<author>
<name sortKey="Gerday, C" uniqKey="Gerday C">C Gerday</name>
</author>
</analytic>
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</TEI>
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<list>
<country>
<li>Irlande (pays)</li>
</country>
</list>
<tree>
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<name sortKey="Flemer, Burkhardt" sort="Flemer, Burkhardt" uniqKey="Flemer B" first="Burkhardt" last="Flemer">Burkhardt Flemer</name>
<name sortKey="Jackson, Stephen A" sort="Jackson, Stephen A" uniqKey="Jackson S" first="Stephen A." last="Jackson">Stephen A. Jackson</name>
<name sortKey="Kennedy, Jonathan" sort="Kennedy, Jonathan" uniqKey="Kennedy J" first="Jonathan" last="Kennedy">Jonathan Kennedy</name>
<name sortKey="Lejon, David P H" sort="Lejon, David P H" uniqKey="Lejon D" first="David P. H." last="Lejon">David P. H. Lejon</name>
</noCountry>
<country name="Irlande (pays)">
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<name sortKey="Morrissey, John P" sort="Morrissey, John P" uniqKey="Morrissey J" first="John P." last="Morrissey">John P. Morrissey</name>
</noRegion>
<name sortKey="Dobson, Alan D W" sort="Dobson, Alan D W" uniqKey="Dobson A" first="Alan D. W." last="Dobson">Alan D. W. Dobson</name>
<name sortKey="O Ara, Fergal" sort="O Ara, Fergal" uniqKey="O Ara F" first="Fergal" last="O Ara">Fergal O Ara</name>
<name sortKey="O Ara, Fergal" sort="O Ara, Fergal" uniqKey="O Ara F" first="Fergal" last="O Ara">Fergal O Ara</name>
</country>
</tree>
</affiliations>
</record>

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