Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species
Identifieur interne : 000212 ( Pmc/Checkpoint ); précédent : 000211; suivant : 000213Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by Marinobacter species
Auteurs : Kim M. Handley [États-Unis] ; Jonathan R. Lloyd [Royaume-Uni]Source :
- Frontiers in Microbiology [ 1664-302X ] ; 2013.
Abstract
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Url:
DOI: 10.3389/fmicb.2013.00136
PubMed: 23734151
PubMed Central: 3660661
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by <italic>Marinobacter</italic> species</title><author><name sortKey="Handley, Kim M" sort="Handley, Kim M" uniqKey="Handley K" first="Kim M." last="Handley">Kim M. Handley</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Searle Chemistry Laboratory, Computation Institute, University of Chicago</institution><country>Chicago, IL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Computing, Environment and Life Sciences, Argonne National Laboratory</institution><country>Chicago, IL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lloyd, Jonathan R" sort="Lloyd, Jonathan R" uniqKey="Lloyd J" first="Jonathan R." last="Lloyd">Jonathan R. Lloyd</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>School of Earth, Atmospheric, and Environmental Sciences, University of Manchester</institution><country>Manchester, UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">23734151</idno><idno type="pmc">3660661</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3660661</idno><idno type="RBID">PMC:3660661</idno><idno type="doi">10.3389/fmicb.2013.00136</idno><date when="2013">2013</date><idno type="wicri:Area/Pmc/Corpus">000502</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000502</idno><idno type="wicri:Area/Pmc/Curation">000501</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000501</idno><idno type="wicri:Area/Pmc/Checkpoint">000212</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000212</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by <italic>Marinobacter</italic> species</title><author><name sortKey="Handley, Kim M" sort="Handley, Kim M" uniqKey="Handley K" first="Kim M." last="Handley">Kim M. Handley</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Searle Chemistry Laboratory, Computation Institute, University of Chicago</institution><country>Chicago, IL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Computing, Environment and Life Sciences, Argonne National Laboratory</institution><country>Chicago, IL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Lloyd, Jonathan R" sort="Lloyd, Jonathan R" uniqKey="Lloyd J" first="Jonathan R." last="Lloyd">Jonathan R. Lloyd</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>School of Earth, Atmospheric, and Environmental Sciences, University of Manchester</institution><country>Manchester, UK</country></nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Microbiology</title><idno type="eISSN">1664-302X</idno><imprint><date when="2013">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The <italic>Marinobacter</italic> genus comprises widespread marine bacteria, found in localities as diverse as the deep ocean, coastal seawater and sediment, hydrothermal settings, oceanic basalt, sea-ice, sand, solar salterns, and oil fields. Terrestrial sources include saline soil and wine-barrel-decalcification wastewater. The genus was designated in 1992 for the Gram-negative, hydrocarbon-degrading bacterium <italic>Marinobacter hydrocarbonoclasticus</italic>. Since then, a further 31 type strains have been designated. Nonetheless, the metabolic range of many <italic>Marinobacter</italic> species remains largely unexplored. Most species have been classified as aerobic heterotrophs, and assessed for limited anaerobic pathways (fermentation or nitrate reduction), whereas studies of low-temperature hydrothermal sediments, basalt at oceanic spreading centers, and phytoplankton have identified species that possess a respiratory repertoire with significant biogeochemical implications. Notable physiological traits include nitrate-dependent Fe(II)-oxidation, arsenic and fumarate redox cycling, and Mn(II) oxidation. There is also evidence for Fe(III) reduction, and metal(loid) detoxification. Considering the ubiquity and metabolic capabilities of the genus, <italic>Marinobacter</italic> species may perform an important and underestimated role in the biogeochemical cycling of organics and metals in varied marine habitats, and spanning aerobic-to-anoxic redox gradients.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aguilera, M" uniqKey="Aguilera M">M. Aguilera</name></author><author><name sortKey="Jimenez Pranteda, M L" uniqKey="Jimenez Pranteda M">M. L. Jiménez-Pranteda</name></author><author><name sortKey="Kharroub, K" uniqKey="Kharroub K">K. Kharroub</name></author><author><name sortKey="Gonzalez Paredes, A" uniqKey="Gonzalez Paredes A">A. González-Paredes</name></author><author><name sortKey="Durban, J J" uniqKey="Durban J">J. J. Durban</name></author><author><name sortKey="Russell, N J" uniqKey="Russell N">N. J. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Front Microbiol</journal-id><journal-id journal-id-type="iso-abbrev">Front Microbiol</journal-id><journal-id journal-id-type="publisher-id">Front. Microbiol.</journal-id><journal-title-group><journal-title>Frontiers in Microbiology</journal-title></journal-title-group><issn pub-type="epub">1664-302X</issn><publisher><publisher-name>Frontiers Media S.A.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">23734151</article-id><article-id pub-id-type="pmc">3660661</article-id><article-id pub-id-type="doi">10.3389/fmicb.2013.00136</article-id><article-categories><subj-group subj-group-type="heading"><subject>Microbiology</subject><subj-group><subject>Mini Review Article</subject></subj-group></subj-group></article-categories><title-group><article-title>Biogeochemical implications of the ubiquitous colonization of marine habitats and redox gradients by <italic>Marinobacter</italic> species</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Handley</surname><given-names>Kim M.</given-names></name><xref ref-type="aff" rid="aff1"><sup>1</sup></xref><xref ref-type="aff" rid="aff2"><sup>2</sup></xref><xref ref-type="author-notes" rid="fn001"><sup>*</sup></xref></contrib><contrib contrib-type="author"><name><surname>Lloyd</surname><given-names>Jonathan R.</given-names></name><xref ref-type="aff" rid="aff3"><sup>3</sup></xref></contrib></contrib-group><aff id="aff1"><sup>1</sup><institution>Searle Chemistry Laboratory, Computation Institute, University of Chicago</institution><country>Chicago, IL, USA</country></aff><aff id="aff2"><sup>2</sup><institution>Computing, Environment and Life Sciences, Argonne National Laboratory</institution><country>Chicago, IL, USA</country></aff><aff id="aff3"><sup>3</sup><institution>School of Earth, Atmospheric, and Environmental Sciences, University of Manchester</institution><country>Manchester, UK</country></aff><author-notes><fn fn-type="edited-by"><p>Edited by: Andreas Teske, University of North Carolina at Chapel Hill, USA</p></fn><fn fn-type="edited-by"><p>Reviewed by: Purificacion Lopez-Garcia, Centre National de la Recherche Scientifique, France; Juergen Wiegel, University of Georgia, USA</p></fn><corresp id="fn001">*Correspondence: Kim M. Handley, Searle Chemistry Laboratory, Computation Institute, University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, USA. e-mail: <email xlink:type="simple">kmhandley@uchicago.edu</email></corresp><fn fn-type="other" id="fn002"><p>This article was submitted to Frontiers in Extreme Microbiology, a specialty of Frontiers in Microbiology.</p></fn></author-notes><pub-date pub-type="epub"><day>22</day><month>5</month><year>2013</year></pub-date><pub-date pub-type="collection"><year>2013</year></pub-date><volume>4</volume><elocation-id>136</elocation-id><history><date date-type="received"><day>15</day><month>2</month><year>2013</year></date><date date-type="accepted"><day>07</day><month>5</month><year>2013</year></date></history><permissions><copyright-statement>Copyright © 2013 Handley and Lloyd.</copyright-statement><copyright-year>2013</copyright-year><license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/3.0/"><license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.</license-p></license></permissions><abstract><p>The <italic>Marinobacter</italic> genus comprises widespread marine bacteria, found in localities as diverse as the deep ocean, coastal seawater and sediment, hydrothermal settings, oceanic basalt, sea-ice, sand, solar salterns, and oil fields. Terrestrial sources include saline soil and wine-barrel-decalcification wastewater. The genus was designated in 1992 for the Gram-negative, hydrocarbon-degrading bacterium <italic>Marinobacter hydrocarbonoclasticus</italic>. Since then, a further 31 type strains have been designated. Nonetheless, the metabolic range of many <italic>Marinobacter</italic> species remains largely unexplored. Most species have been classified as aerobic heterotrophs, and assessed for limited anaerobic pathways (fermentation or nitrate reduction), whereas studies of low-temperature hydrothermal sediments, basalt at oceanic spreading centers, and phytoplankton have identified species that possess a respiratory repertoire with significant biogeochemical implications. Notable physiological traits include nitrate-dependent Fe(II)-oxidation, arsenic and fumarate redox cycling, and Mn(II) oxidation. There is also evidence for Fe(III) reduction, and metal(loid) detoxification. Considering the ubiquity and metabolic capabilities of the genus, <italic>Marinobacter</italic> species may perform an important and underestimated role in the biogeochemical cycling of organics and metals in varied marine habitats, and spanning aerobic-to-anoxic redox gradients.</p></abstract><kwd-group><kwd><italic>Marinobacter</italic></kwd><kwd>marine</kwd><kwd>hydrothermal</kwd><kwd>biogeochemical cycling</kwd><kwd>hydrocarbon</kwd><kwd>iron</kwd><kwd>arsenic</kwd><kwd>opportunistic</kwd></kwd-group><counts><fig-count count="1"></fig-count><table-count count="2"></table-count><equation-count count="0"></equation-count><ref-count count="105"></ref-count><page-count count="10"></page-count><word-count count="8369"></word-count></counts></article-meta></front></pmc><affiliations><list><country><li>Royaume-Uni</li><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Handley, Kim M" sort="Handley, Kim M" uniqKey="Handley K" first="Kim M." last="Handley">Kim M. Handley</name></noRegion><name sortKey="Handley, Kim M" sort="Handley, Kim M" uniqKey="Handley K" first="Kim M." last="Handley">Kim M. Handley</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Lloyd, Jonathan R" sort="Lloyd, Jonathan R" uniqKey="Lloyd J" first="Jonathan R." last="Lloyd">Jonathan R. Lloyd</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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