Haptically assisted connection procedure for the reconstruction of dendritic spines.
Identifieur interne : 00B148 ( Main/Merge ); précédent : 00B147; suivant : 00B149Haptically assisted connection procedure for the reconstruction of dendritic spines.
Auteurs : Loic Corenthy ; Marcos Garcia ; Sofia Bayona ; Andrea Santuy ; Jose San Martin ; Ruth Benavides-Piccione ; Javier Defelipe ; Luis PastorSource :
- IEEE transactions on haptics [ 2329-4051 ]
English descriptors
- KwdEn :
- MESH :
Abstract
Dendritic spines are thin protrusions that cover the dendritic surface of numerous neurons in the brain and whose function seems to play a key role in neural circuits. The correct segmentation of those structures is difficult due to their small size and the resulting spines can appear incomplete. This paper presents a four-step procedure for the complete reconstruction of dendritic spines. The haptically driven procedure is intended to work as an image processing stage before the automatic segmentation step giving the final representation of the dendritic spines. The procedure is designed to allow both the navigation and the volume image editing to be carried out using a haptic device. A use case employing our procedure together with a commercial software package for the segmentation stage is illustrated. Finally, the haptic editing is evaluated in two experiments; the first experiment concerns the benefits of the force feedback and the second checks the suitability of the use of a haptic device as input. In both cases, the results shows that the procedure improves the editing accuracy.
DOI: 10.1109/TOH.2014.2354041
PubMed: 25203994
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000557
- to stream PubMed, to step Curation: 000557
- to stream PubMed, to step Checkpoint: 002352
- to stream Ncbi, to step Merge: 003276
- to stream Ncbi, to step Curation: 003276
- to stream Ncbi, to step Checkpoint: 003276
Links to Exploration step
pubmed:25203994Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Haptically assisted connection procedure for the reconstruction of dendritic spines.</title>
<author><name sortKey="Corenthy, Loic" sort="Corenthy, Loic" uniqKey="Corenthy L" first="Loic" last="Corenthy">Loic Corenthy</name>
</author>
<author><name sortKey="Garcia, Marcos" sort="Garcia, Marcos" uniqKey="Garcia M" first="Marcos" last="Garcia">Marcos Garcia</name>
</author>
<author><name sortKey="Bayona, Sofia" sort="Bayona, Sofia" uniqKey="Bayona S" first="Sofia" last="Bayona">Sofia Bayona</name>
</author>
<author><name sortKey="Santuy, Andrea" sort="Santuy, Andrea" uniqKey="Santuy A" first="Andrea" last="Santuy">Andrea Santuy</name>
</author>
<author><name sortKey="Martin, Jose San" sort="Martin, Jose San" uniqKey="Martin J" first="Jose San" last="Martin">Jose San Martin</name>
</author>
<author><name sortKey="Benavides Piccione, Ruth" sort="Benavides Piccione, Ruth" uniqKey="Benavides Piccione R" first="Ruth" last="Benavides-Piccione">Ruth Benavides-Piccione</name>
</author>
<author><name sortKey="Defelipe, Javier" sort="Defelipe, Javier" uniqKey="Defelipe J" first="Javier" last="Defelipe">Javier Defelipe</name>
</author>
<author><name sortKey="Pastor, Luis" sort="Pastor, Luis" uniqKey="Pastor L" first="Luis" last="Pastor">Luis Pastor</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="????"><PubDate><MedlineDate>2014 Oct-Dec</MedlineDate>
</PubDate>
</date>
<idno type="doi">10.1109/TOH.2014.2354041</idno>
<idno type="RBID">pubmed:25203994</idno>
<idno type="pmid">25203994</idno>
<idno type="wicri:Area/PubMed/Corpus">000557</idno>
<idno type="wicri:Area/PubMed/Curation">000557</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002352</idno>
<idno type="wicri:Area/Ncbi/Merge">003276</idno>
<idno type="wicri:Area/Ncbi/Curation">003276</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">003276</idno>
<idno type="wicri:Area/Main/Merge">00B148</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Haptically assisted connection procedure for the reconstruction of dendritic spines.</title>
<author><name sortKey="Corenthy, Loic" sort="Corenthy, Loic" uniqKey="Corenthy L" first="Loic" last="Corenthy">Loic Corenthy</name>
</author>
<author><name sortKey="Garcia, Marcos" sort="Garcia, Marcos" uniqKey="Garcia M" first="Marcos" last="Garcia">Marcos Garcia</name>
</author>
<author><name sortKey="Bayona, Sofia" sort="Bayona, Sofia" uniqKey="Bayona S" first="Sofia" last="Bayona">Sofia Bayona</name>
</author>
<author><name sortKey="Santuy, Andrea" sort="Santuy, Andrea" uniqKey="Santuy A" first="Andrea" last="Santuy">Andrea Santuy</name>
</author>
<author><name sortKey="Martin, Jose San" sort="Martin, Jose San" uniqKey="Martin J" first="Jose San" last="Martin">Jose San Martin</name>
</author>
<author><name sortKey="Benavides Piccione, Ruth" sort="Benavides Piccione, Ruth" uniqKey="Benavides Piccione R" first="Ruth" last="Benavides-Piccione">Ruth Benavides-Piccione</name>
</author>
<author><name sortKey="Defelipe, Javier" sort="Defelipe, Javier" uniqKey="Defelipe J" first="Javier" last="Defelipe">Javier Defelipe</name>
</author>
<author><name sortKey="Pastor, Luis" sort="Pastor, Luis" uniqKey="Pastor L" first="Luis" last="Pastor">Luis Pastor</name>
</author>
</analytic>
<series><title level="j">IEEE transactions on haptics</title>
<idno type="eISSN">2329-4051</idno>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adult</term>
<term>Algorithms</term>
<term>Dendritic Spines</term>
<term>Feedback, Physiological</term>
<term>Female</term>
<term>Humans</term>
<term>Image Processing, Computer-Assisted (methods)</term>
<term>Imaging, Three-Dimensional</term>
<term>Male</term>
<term>Microscopy, Polarization</term>
<term>Software</term>
<term>Touch (physiology)</term>
<term>User-Computer Interface</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Image Processing, Computer-Assisted</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Touch</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Adult</term>
<term>Algorithms</term>
<term>Dendritic Spines</term>
<term>Feedback, Physiological</term>
<term>Female</term>
<term>Humans</term>
<term>Imaging, Three-Dimensional</term>
<term>Male</term>
<term>Microscopy, Polarization</term>
<term>Software</term>
<term>User-Computer Interface</term>
<term>Young Adult</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Dendritic spines are thin protrusions that cover the dendritic surface of numerous neurons in the brain and whose function seems to play a key role in neural circuits. The correct segmentation of those structures is difficult due to their small size and the resulting spines can appear incomplete. This paper presents a four-step procedure for the complete reconstruction of dendritic spines. The haptically driven procedure is intended to work as an image processing stage before the automatic segmentation step giving the final representation of the dendritic spines. The procedure is designed to allow both the navigation and the volume image editing to be carried out using a haptic device. A use case employing our procedure together with a commercial software package for the segmentation stage is illustrated. Finally, the haptic editing is evaluated in two experiments; the first experiment concerns the benefits of the force feedback and the second checks the suitability of the use of a haptic device as input. In both cases, the results shows that the procedure improves the editing accuracy.</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/HapticV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 00B148 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 00B148 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= HapticV1 |flux= Main |étape= Merge |type= RBID |clé= pubmed:25203994 |texte= Haptically assisted connection procedure for the reconstruction of dendritic spines. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:25203994" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \ | NlmPubMed2Wicri -a HapticV1
This area was generated with Dilib version V0.6.23. |