SrasV1, PubMed, Curation, bibRecord, 000F45

Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.

Identifieur interne : 000F45 ( PubMed/Curation ); précédent : 000F44; suivant : 000F46

Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.

Auteurs : Christopher Cowled [Australie] ; Cameron R. Stewart ; Vladimir A. Likic ; Marc R. Friedl Nder ; Mary Tachedjian ; Kristie A. Jenkins ; Mark L. Tizard ; Pauline Cottee ; Glenn A. Marsh ; Peng Zhou ; Michelle L. Baker ; Andrew G. Bean ; Lin-Fa Wang

Source :

BMC genomics [ 1471-2164 ] ; 2014.

RBID : pubmed:25128405

Descripteurs français

English descriptors

KwdEn :
- Animals, Base Sequence, Binding Sites, Chiroptera (genetics), Gene Ontology, High-Throughput Nucleotide Sequencing, Introns, Inverted Repeat Sequences, Male, MicroRNAs (genetics), Molecular Sequence Annotation, Molecular Sequence Data, Multigene Family, RNA Interference, Sequence Analysis, RNA, Sequence Homology, Nucleic Acid.
MESH :
- chemical , genetics : MicroRNAs.
- genetics : Chiroptera.
- Animals, Base Sequence, Binding Sites, Gene Ontology, High-Throughput Nucleotide Sequencing, Introns, Inverted Repeat Sequences, Male, Molecular Sequence Annotation, Molecular Sequence Data, Multigene Family, RNA Interference, Sequence Analysis, RNA, Sequence Homology, Nucleic Acid.

Abstract

Bats are a major source of new and emerging viral diseases. Despite the fact that bats carry and shed highly pathogenic viruses including Ebola, Nipah and SARS, they rarely display clinical symptoms of infection. Host factors influencing viral replication are poorly understood in bats and are likely to include both pre- and post-transcriptional regulatory mechanisms. MicroRNAs are a major mechanism of post-transcriptional gene regulation, however very little is known about them in bats.

DOI: 10.1186/1471-2164-15-682
PubMed: 25128405

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Le document en format XML

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<term>Molecular Sequence Annotation</term>
<term>Molecular Sequence Data</term>
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<term>RNA Interference</term>
<term>Sequence Analysis, RNA</term>
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<term>Données de séquences moléculaires</term>
<term>Famille multigénique</term>
<term>Gene Ontology</term>
<term>Interférence par ARN</term>
<term>Introns</term>
<term>Mâle</term>
<term>Similitude de séquences d'acides nucléiques</term>
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<term>Séquence nucléotidique</term>
<term>Séquences répétées inversées</term>
<term>Séquençage nucléotidique à haut débit</term>
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<term>Base Sequence</term>
<term>Binding Sites</term>
<term>Gene Ontology</term>
<term>High-Throughput Nucleotide Sequencing</term>
<term>Introns</term>
<term>Inverted Repeat Sequences</term>
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<term>Molecular Sequence Annotation</term>
<term>Molecular Sequence Data</term>
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<term>Annotation de séquence moléculaire</term>
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<front><div type="abstract" xml:lang="en">Bats are a major source of new and emerging viral diseases. Despite the fact that bats carry and shed highly pathogenic viruses including Ebola, Nipah and SARS, they rarely display clinical symptoms of infection. Host factors influencing viral replication are poorly understood in bats and are likely to include both pre- and post-transcriptional regulatory mechanisms. MicroRNAs are a major mechanism of post-transcriptional gene regulation, however very little is known about them in bats.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25128405</PMID>
<DateCompleted><Year>2015</Year>
<Month>05</Month>
<Day>12</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2164</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>15</Volume>
<PubDate><Year>2014</Year>
<Month>Aug</Month>
<Day>15</Day>
</PubDate>
</JournalIssue>
<Title>BMC genomics</Title>
<ISOAbbreviation>BMC Genomics</ISOAbbreviation>
</Journal>
<ArticleTitle>Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.</ArticleTitle>
<Pagination><MedlinePgn>682</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1186/1471-2164-15-682</ELocationID>
<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Bats are a major source of new and emerging viral diseases. Despite the fact that bats carry and shed highly pathogenic viruses including Ebola, Nipah and SARS, they rarely display clinical symptoms of infection. Host factors influencing viral replication are poorly understood in bats and are likely to include both pre- and post-transcriptional regulatory mechanisms. MicroRNAs are a major mechanism of post-transcriptional gene regulation, however very little is known about them in bats.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">This study describes 399 microRNAs identified by deep sequencing of small RNA isolated from tissues of the Black flying fox, Pteropus alecto, a confirmed natural reservoir of the human pathogens Hendra virus and Australian bat lyssavirus. Of the microRNAs identified, more than 100 are unique amongst vertebrates, including a subset containing mutations in critical seed regions. Clusters of rapidly-evolving microRNAs were identified, as well as microRNAs predicted to target genes involved in antiviral immunity, the DNA damage response, apoptosis and autophagy. Closer inspection of the predicted targets for several highly supported novel miRNA candidates suggests putative roles in host-virus interaction.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">MicroRNAs are likely to play major roles in regulating virus-host interaction in bats, via dampening of inflammatory responses (limiting the effects of immunopathology), and directly limiting the extent of viral replication, either through restricting the availability of essential factors or by controlling apoptosis. Characterisation of the bat microRNA repertoire is an essential step towards understanding transcriptional regulation during viral infection, and will assist in the identification of mechanisms that enable bats to act as natural virus reservoirs. This in turn will facilitate the development of antiviral strategies for use in humans and other species.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cowled</LastName>
<ForeName>Christopher</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>CSIRO Australian Animal Health Laboratory, 5 Portarlington Rd, Geelong East, Victoria 3220, Australia. chris.cowled@csiro.au.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stewart</LastName>
<ForeName>Cameron R</ForeName>
<Initials>CR</Initials>
</Author>
<Author ValidYN="Y"><LastName>Likic</LastName>
<ForeName>Vladimir A</ForeName>
<Initials>VA</Initials>
</Author>
<Author ValidYN="Y"><LastName>Friedländer</LastName>
<ForeName>Marc R</ForeName>
<Initials>MR</Initials>
</Author>
<Author ValidYN="Y"><LastName>Tachedjian</LastName>
<ForeName>Mary</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Jenkins</LastName>
<ForeName>Kristie A</ForeName>
<Initials>KA</Initials>
</Author>
<Author ValidYN="Y"><LastName>Tizard</LastName>
<ForeName>Mark L</ForeName>
<Initials>ML</Initials>
</Author>
<Author ValidYN="Y"><LastName>Cottee</LastName>
<ForeName>Pauline</ForeName>
<Initials>P</Initials>
</Author>
<Author ValidYN="Y"><LastName>Marsh</LastName>
<ForeName>Glenn A</ForeName>
<Initials>GA</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zhou</LastName>
<ForeName>Peng</ForeName>
<Initials>P</Initials>
</Author>
<Author ValidYN="Y"><LastName>Baker</LastName>
<ForeName>Michelle L</ForeName>
<Initials>ML</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bean</LastName>
<ForeName>Andrew G</ForeName>
<Initials>AG</Initials>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Lin-fa</ForeName>
<Initials>LF</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>BioProject</DataBankName>
<AccessionNumberList><AccessionNumber>PRJNA210946</AccessionNumber>
</AccessionNumberList>
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<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>08</Month>
<Day>15</Day>
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<MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001665" MajorTopicYN="N">Binding Sites</DescriptorName>
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<MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
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<MeshHeading><DescriptorName UI="D063990" MajorTopicYN="N">Gene Ontology</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D059014" MajorTopicYN="N">High-Throughput Nucleotide Sequencing</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007438" MajorTopicYN="N">Introns</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D055029" MajorTopicYN="N">Inverted Repeat Sequences</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005810" MajorTopicYN="N">Multigene Family</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D034622" MajorTopicYN="N">RNA Interference</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName>
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Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.

Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing.

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