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Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

Identifieur interne : 000306 ( PubMed/Curation ); précédent : 000305; suivant : 000307

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

Auteurs : Paola Stefanelli [Italie] ; Giovanni Faggioni [Italie] ; Alessandra Lo Presti [Italie] ; Stefano Fiore ; Antonella Marchi ; Eleonora Benedetti ; Concetta Fabiani ; Anna Anselmo [Italie] ; Andrea Ciammaruconi [Italie] ; Antonella Fortunato [Italie] ; Riccardo De Santis [Italie] ; Silvia Fillo [Italie] ; Maria Rosaria Capobianchi [Italie] ; Maria Rita Gismondo [Italie] ; Alessandra Ciervo [Italie] ; Giovanni Rezza [Italie] ; Maria Rita Castrucci [Italie] ; Florigio Lista [Italie] ; On Behalf Of Iss Covid-Study Group

Source :

RBID : pubmed:32265007

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English descriptors

Abstract

Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.

DOI: 10.2807/1560-7917.ES.2020.25.13.2000305
PubMed: 32265007

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Stefano Fiore
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Antonella Marchi
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Eleonora Benedetti
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Concetta Fabiani
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On Behalf Of Iss Covid-Study Group
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<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Betacoronavirus</term>
<term>Coronavirus</term>
<term>Genome, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ARN viral</term>
<term>Coronavirus</term>
<term>Génome viral</term>
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<term>Betacoronavirus</term>
<term>Coronavirus</term>
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<term>ARN viral</term>
<term>Coronavirus</term>
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<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Whole Genome Sequencing</term>
</keywords>
<keywords scheme="MESH" qualifier="transmission" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr">
<term>Syndrome respiratoire aigu sévère</term>
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<keywords scheme="MESH" qualifier="virology" xml:lang="en">
<term>Severe Acute Respiratory Syndrome</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Infections à coronavirus</term>
<term>Pneumopathie virale</term>
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<keywords scheme="MESH" xml:lang="en">
<term>Humans</term>
<term>Molecular Epidemiology</term>
<term>Pandemics</term>
<term>Phylogeny</term>
<term>Point Mutation</term>
<term>Travel</term>
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<keywords scheme="MESH" xml:lang="fr">
<term>Allemagne</term>
<term>Chine</term>
<term>Coronavirus</term>
<term>Humains</term>
<term>Italie</term>
<term>Mutation ponctuelle</term>
<term>Pandémies</term>
<term>Phylogénie</term>
<term>Voyage</term>
<term>Épidémiologie moléculaire</term>
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<term>République populaire de Chine</term>
<term>Allemagne</term>
<term>Italie</term>
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<div type="abstract" xml:lang="en">Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.</div>
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<Year>2020</Year>
<Month>04</Month>
<Day>14</Day>
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<Year>2020</Year>
<Month>04</Month>
<Day>14</Day>
</DateRevised>
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<ISSN IssnType="Electronic">1560-7917</ISSN>
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<Volume>25</Volume>
<Issue>13</Issue>
<PubDate>
<Year>2020</Year>
<Month>04</Month>
</PubDate>
</JournalIssue>
<Title>Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin</Title>
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<ArticleTitle>Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.</ArticleTitle>
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<AbstractText>Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.</AbstractText>
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<Author ValidYN="Y">
<LastName>Stefanelli</LastName>
<ForeName>Paola</ForeName>
<Initials>P</Initials>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Faggioni</LastName>
<ForeName>Giovanni</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lo Presti</LastName>
<ForeName>Alessandra</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Fiore</LastName>
<ForeName>Stefano</ForeName>
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<AffiliationInfo>
<Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<LastName>Marchi</LastName>
<ForeName>Antonella</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Benedetti</LastName>
<ForeName>Eleonora</ForeName>
<Initials>E</Initials>
<AffiliationInfo>
<Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fabiani</LastName>
<ForeName>Concetta</ForeName>
<Initials>C</Initials>
<AffiliationInfo>
<Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
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<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
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</AffiliationInfo>
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<LastName>Fortunato</LastName>
<ForeName>Antonella</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>De Santis</LastName>
<ForeName>Riccardo</ForeName>
<Initials>R</Initials>
<AffiliationInfo>
<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Fillo</LastName>
<ForeName>Silvia</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Capobianchi</LastName>
<ForeName>Maria Rosaria</ForeName>
<Initials>MR</Initials>
<AffiliationInfo>
<Affiliation>Laboratory of Virology, National Institute for Infectious Diseases "Lazzaro Spallanzani" IRCCS, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gismondo</LastName>
<ForeName>Maria Rita</ForeName>
<Initials>MR</Initials>
<AffiliationInfo>
<Affiliation>Clinical Microbiology, Virology and Bioemergency, L. Sacco University Hospital, Milan, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Ciervo</LastName>
<ForeName>Alessandra</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<LastName>Rezza</LastName>
<ForeName>Giovanni</ForeName>
<Initials>G</Initials>
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<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
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<LastName>Castrucci</LastName>
<ForeName>Maria Rita</ForeName>
<Initials>MR</Initials>
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<Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<LastName>Lista</LastName>
<ForeName>Florigio</ForeName>
<Initials>F</Initials>
<AffiliationInfo>
<Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>On Behalf Of Iss Covid-Study Group</LastName>
<AffiliationInfo>
<Affiliation>The members of the ISS COVID-19 study group are acknowledged at the end of the article.</Affiliation>
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<Language>eng</Language>
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<Country>Sweden</Country>
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<MeshHeading>
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