SrasV1, PubMed, Corpus, bibRecord, 000306

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

Identifieur interne : 000306 ( PubMed/Corpus ); précédent : 000305; suivant : 000307

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

Auteurs : Paola Stefanelli ; Giovanni Faggioni ; Alessandra Lo Presti ; Stefano Fiore ; Antonella Marchi ; Eleonora Benedetti ; Concetta Fabiani ; Anna Anselmo ; Andrea Ciammaruconi ; Antonella Fortunato ; Riccardo De Santis ; Silvia Fillo ; Maria Rosaria Capobianchi ; Maria Rita Gismondo ; Alessandra Ciervo ; Giovanni Rezza ; Maria Rita Castrucci ; Florigio Lista ; On Behalf Of Iss Covid-Study Group

Source :

Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin [ 1560-7917 ] ; 2020.

RBID : pubmed:32265007

English descriptors

KwdEn :
- Betacoronavirus (genetics), Betacoronavirus (isolation & purification), China, Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (diagnosis), Coronavirus Infections (epidemiology), Coronavirus Infections (transmission), Genome, Viral (genetics), Germany, Humans, Italy, Molecular Epidemiology, Pandemics, Phylogeny, Pneumonia, Viral (diagnosis), Pneumonia, Viral (epidemiology), Pneumonia, Viral (transmission), Point Mutation, RNA, Viral (genetics), RNA, Viral (isolation & purification), Severe Acute Respiratory Syndrome (diagnosis), Severe Acute Respiratory Syndrome (virology), Travel, Whole Genome Sequencing (methods).
MESH :
- chemical , genetics : RNA, Viral.
- chemical , isolation & purification : RNA, Viral.
- geographic : China, Germany, Italy.
- classification : Coronavirus.
- diagnosis : Coronavirus Infections, Pneumonia, Viral, Severe Acute Respiratory Syndrome.
- epidemiology : Coronavirus Infections, Pneumonia, Viral.
- genetics : Betacoronavirus, Coronavirus, Genome, Viral.
- isolation & purification : Betacoronavirus, Coronavirus.
- methods : Whole Genome Sequencing.
- transmission : Coronavirus Infections, Pneumonia, Viral.
- virology : Severe Acute Respiratory Syndrome.
- Humans, Molecular Epidemiology, Pandemics, Phylogeny, Point Mutation, Travel.

Abstract

Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.

DOI: 10.2807/1560-7917.ES.2020.25.13.2000305
PubMed: 32265007

Links to Exploration step

pubmed:32265007

Le document en format XML

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<author><name sortKey="Stefanelli, Paola" sort="Stefanelli, Paola" uniqKey="Stefanelli P" first="Paola" last="Stefanelli">Paola Stefanelli</name>
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<author><name sortKey="Faggioni, Giovanni" sort="Faggioni, Giovanni" uniqKey="Faggioni G" first="Giovanni" last="Faggioni">Giovanni Faggioni</name>
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<author><name sortKey="Fiore, Stefano" sort="Fiore, Stefano" uniqKey="Fiore S" first="Stefano" last="Fiore">Stefano Fiore</name>
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<author><name sortKey="Marchi, Antonella" sort="Marchi, Antonella" uniqKey="Marchi A" first="Antonella" last="Marchi">Antonella Marchi</name>
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<author><name sortKey="Benedetti, Eleonora" sort="Benedetti, Eleonora" uniqKey="Benedetti E" first="Eleonora" last="Benedetti">Eleonora Benedetti</name>
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<author><name sortKey="Fabiani, Concetta" sort="Fabiani, Concetta" uniqKey="Fabiani C" first="Concetta" last="Fabiani">Concetta Fabiani</name>
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<author><name sortKey="Capobianchi, Maria Rosaria" sort="Capobianchi, Maria Rosaria" uniqKey="Capobianchi M" first="Maria Rosaria" last="Capobianchi">Maria Rosaria Capobianchi</name>
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<author><name sortKey="Gismondo, Maria Rita" sort="Gismondo, Maria Rita" uniqKey="Gismondo M" first="Maria Rita" last="Gismondo">Maria Rita Gismondo</name>
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<author><name sortKey="Rezza, Giovanni" sort="Rezza, Giovanni" uniqKey="Rezza G" first="Giovanni" last="Rezza">Giovanni Rezza</name>
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<author><name sortKey="Castrucci, Maria Rita" sort="Castrucci, Maria Rita" uniqKey="Castrucci M" first="Maria Rita" last="Castrucci">Maria Rita Castrucci</name>
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<author><name sortKey="Lista, Florigio" sort="Lista, Florigio" uniqKey="Lista F" first="Florigio" last="Lista">Florigio Lista</name>
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<front><div type="abstract" xml:lang="en">Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.</div>
</front>
</TEI>
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<DateCompleted><Year>2020</Year>
<Month>04</Month>
<Day>14</Day>
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<DateRevised><Year>2020</Year>
<Month>04</Month>
<Day>14</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1560-7917</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>25</Volume>
<Issue>13</Issue>
<PubDate><Year>2020</Year>
<Month>04</Month>
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<Title>Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin</Title>
<ISOAbbreviation>Euro Surveill.</ISOAbbreviation>
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<ArticleTitle>Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.</ArticleTitle>
<ELocationID EIdType="doi" ValidYN="Y">10.2807/1560-7917.ES.2020.25.13.2000305</ELocationID>
<Abstract><AbstractText>Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. In a phylogenetic tree, the Italian patient's sequence clustered with sequences from Germany while the tourist's sequence clustered with other European sequences. Some additional European sequences in the tree segregated outside the two clusters containing the patients' sequences. This suggests multiple SARS-CoV-2 introductions in Europe or virus evolution during circulation.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Stefanelli</LastName>
<ForeName>Paola</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Faggioni</LastName>
<ForeName>Giovanni</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lo Presti</LastName>
<ForeName>Alessandra</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fiore</LastName>
<ForeName>Stefano</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Marchi</LastName>
<ForeName>Antonella</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Benedetti</LastName>
<ForeName>Eleonora</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fabiani</LastName>
<ForeName>Concetta</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>These authors contributed equally to the work.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Anselmo</LastName>
<ForeName>Anna</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ciammaruconi</LastName>
<ForeName>Andrea</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Fortunato</LastName>
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<Initials>A</Initials>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>De Santis</LastName>
<ForeName>Riccardo</ForeName>
<Initials>R</Initials>
<AffiliationInfo><Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fillo</LastName>
<ForeName>Silvia</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Scientific Department Army Medical Center, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Capobianchi</LastName>
<ForeName>Maria Rosaria</ForeName>
<Initials>MR</Initials>
<AffiliationInfo><Affiliation>Laboratory of Virology, National Institute for Infectious Diseases "Lazzaro Spallanzani" IRCCS, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gismondo</LastName>
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<Initials>MR</Initials>
<AffiliationInfo><Affiliation>Clinical Microbiology, Virology and Bioemergency, L. Sacco University Hospital, Milan, Italy.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Ciervo</LastName>
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<Initials>A</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
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<Initials>G</Initials>
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<Initials>MR</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lista</LastName>
<ForeName>Florigio</ForeName>
<Initials>F</Initials>
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</AffiliationInfo>
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Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.

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