Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.
Identifieur interne : 002556 ( PubMed/Corpus ); précédent : 002555; suivant : 002557Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.
Auteurs : Biao Kan ; Ming Wang ; Huaiqi Jing ; Huifang Xu ; Xiugao Jiang ; Meiying Yan ; Weili Liang ; Han Zheng ; Kanglin Wan ; Qiyong Liu ; Buyun Cui ; Yanmei Xu ; Enmin Zhang ; Hongxia Wang ; Jingrong Ye ; Guichang Li ; Machao Li ; Zhigang Cui ; Xiaobao Qi ; Kai Chen ; Lin Du ; Kai Gao ; Yu-Teng Zhao ; Xiao-Zhong Zou ; Yue-Ju Feng ; Yu-Fan Gao ; Rong Hai ; Dongzhen Yu ; Yi Guan ; Jianguo XuSource :
- Journal of virology [ 0022-538X ] ; 2005.
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Animals, Domestic (virology), China (epidemiology), Disease Outbreaks, Disease Reservoirs, Evolution, Molecular, Genetic Variation, Humans, Membrane Glycoproteins (genetics), Molecular Sequence Data, Phylogeny, Raccoon Dogs (virology), SARS Virus (classification), SARS Virus (genetics), SARS Virus (isolation & purification), Sequence Homology, Amino Acid, Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (transmission), Severe Acute Respiratory Syndrome (virology), Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (genetics), Viverridae (virology).
- MESH :
- chemical , genetics : Membrane Glycoproteins, Viral Envelope Proteins.
- geographic , epidemiology : China.
- classification : SARS Virus.
- epidemiology : Severe Acute Respiratory Syndrome.
- genetics : SARS Virus.
- isolation & purification : SARS Virus.
- transmission : Severe Acute Respiratory Syndrome.
- virology : Animals, Domestic, Raccoon Dogs, Severe Acute Respiratory Syndrome, Viverridae.
- Amino Acid Sequence, Animals, Disease Outbreaks, Disease Reservoirs, Evolution, Molecular, Genetic Variation, Humans, Molecular Sequence Data, Phylogeny, Sequence Homology, Amino Acid, Spike Glycoprotein, Coronavirus.
Abstract
Massive numbers of palm civets were culled to remove sources for the reemergence of severe acute respiratory syndrome (SARS) in Guangdong Province, China, in January 2004, following SARS coronavirus detection in market animals. The virus was identified in all 91 palm civets and 15 raccoon dogs of animal market origin sampled prior to culling, but not in 1,107 palm civets later sampled at 25 farms, spread over 12 provinces, which were claimed to be the source of traded animals. Twenty-seven novel signature variation residues (SNVs) were identified on the spike gene and were analyzed for their phylogenetic relationships, based on 17 sequences obtained from animals in our study and from other published studies. Analysis indicated that the virus in palm civets at the live-animal market had evolved to infect humans. The evolutionary starting point was a prototype group consisting of three viral sequences of animal origin. Initially, seven SNV sites caused six amino acid changes, at positions 147, 228, 240, 479, 821, and 1080 of the spike protein, to generate low-pathogenicity viruses. One of these was linked to the first SARS patient in the 2003-2004 period. A further 14 SNVs caused 11 amino acid residue changes, at positions 360, 462, 472, 480, 487, 609, 613, 665, 743, 765, and 1163. The resulting high-pathogenicity groups were responsible for infections during the so-called early-phase epidemic of 2003. Finally, the remaining six SNVs caused four amino acid changes, at positions 227, 244, 344, and 778, which resulted in the group of viruses responsible for the global epidemic.
DOI: 10.1128/JVI.79.18.11892-11900.2005
PubMed: 16140765
Links to Exploration step
pubmed:16140765Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.</title><author><name sortKey="Kan, Biao" sort="Kan, Biao" uniqKey="Kan B" first="Biao" last="Kan">Biao Kan</name><affiliation><nlm:affiliation>State Key Laboratory for Infectious Disease Prevention and Control (China CDC), Chinese Center for Disease Control and Prevention, P.O. Box 5, Changping, Beijing 102206, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name></author><author><name sortKey="Jing, Huaiqi" sort="Jing, Huaiqi" uniqKey="Jing H" first="Huaiqi" last="Jing">Huaiqi Jing</name></author><author><name sortKey="Xu, Huifang" sort="Xu, Huifang" uniqKey="Xu H" first="Huifang" last="Xu">Huifang Xu</name></author><author><name sortKey="Jiang, Xiugao" sort="Jiang, Xiugao" uniqKey="Jiang X" first="Xiugao" last="Jiang">Xiugao Jiang</name></author><author><name sortKey="Yan, Meiying" sort="Yan, Meiying" uniqKey="Yan M" first="Meiying" last="Yan">Meiying Yan</name></author><author><name sortKey="Liang, Weili" sort="Liang, Weili" uniqKey="Liang W" first="Weili" last="Liang">Weili Liang</name></author><author><name sortKey="Zheng, Han" sort="Zheng, Han" uniqKey="Zheng H" first="Han" last="Zheng">Han Zheng</name></author><author><name sortKey="Wan, Kanglin" sort="Wan, Kanglin" uniqKey="Wan K" first="Kanglin" last="Wan">Kanglin Wan</name></author><author><name sortKey="Liu, Qiyong" sort="Liu, Qiyong" uniqKey="Liu Q" first="Qiyong" last="Liu">Qiyong Liu</name></author><author><name sortKey="Cui, Buyun" sort="Cui, Buyun" uniqKey="Cui B" first="Buyun" last="Cui">Buyun Cui</name></author><author><name sortKey="Xu, Yanmei" sort="Xu, Yanmei" uniqKey="Xu Y" first="Yanmei" last="Xu">Yanmei Xu</name></author><author><name sortKey="Zhang, Enmin" sort="Zhang, Enmin" uniqKey="Zhang E" first="Enmin" last="Zhang">Enmin Zhang</name></author><author><name sortKey="Wang, Hongxia" sort="Wang, Hongxia" uniqKey="Wang H" first="Hongxia" last="Wang">Hongxia Wang</name></author><author><name sortKey="Ye, Jingrong" sort="Ye, Jingrong" uniqKey="Ye J" first="Jingrong" last="Ye">Jingrong Ye</name></author><author><name sortKey="Li, Guichang" sort="Li, Guichang" uniqKey="Li G" first="Guichang" last="Li">Guichang Li</name></author><author><name sortKey="Li, Machao" sort="Li, Machao" uniqKey="Li M" first="Machao" last="Li">Machao Li</name></author><author><name sortKey="Cui, Zhigang" sort="Cui, Zhigang" uniqKey="Cui Z" first="Zhigang" last="Cui">Zhigang Cui</name></author><author><name sortKey="Qi, Xiaobao" sort="Qi, Xiaobao" uniqKey="Qi X" first="Xiaobao" last="Qi">Xiaobao Qi</name></author><author><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name></author><author><name sortKey="Du, Lin" sort="Du, Lin" uniqKey="Du L" first="Lin" last="Du">Lin Du</name></author><author><name sortKey="Gao, Kai" sort="Gao, Kai" uniqKey="Gao K" first="Kai" last="Gao">Kai Gao</name></author><author><name sortKey="Zhao, Yu Teng" sort="Zhao, Yu Teng" uniqKey="Zhao Y" first="Yu-Teng" last="Zhao">Yu-Teng Zhao</name></author><author><name sortKey="Zou, Xiao Zhong" sort="Zou, Xiao Zhong" uniqKey="Zou X" first="Xiao-Zhong" last="Zou">Xiao-Zhong Zou</name></author><author><name sortKey="Feng, Yue Ju" sort="Feng, Yue Ju" uniqKey="Feng Y" first="Yue-Ju" last="Feng">Yue-Ju Feng</name></author><author><name sortKey="Gao, Yu Fan" sort="Gao, Yu Fan" uniqKey="Gao Y" first="Yu-Fan" last="Gao">Yu-Fan Gao</name></author><author><name sortKey="Hai, Rong" sort="Hai, Rong" uniqKey="Hai R" first="Rong" last="Hai">Rong Hai</name></author><author><name sortKey="Yu, Dongzhen" sort="Yu, Dongzhen" uniqKey="Yu D" first="Dongzhen" last="Yu">Dongzhen Yu</name></author><author><name sortKey="Guan, Yi" sort="Guan, Yi" uniqKey="Guan Y" first="Yi" last="Guan">Yi Guan</name></author><author><name sortKey="Xu, Jianguo" sort="Xu, Jianguo" uniqKey="Xu J" first="Jianguo" last="Xu">Jianguo Xu</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2005">2005</date><idno type="RBID">pubmed:16140765</idno><idno type="pmid">16140765</idno><idno type="doi">10.1128/JVI.79.18.11892-11900.2005</idno><idno type="wicri:Area/PubMed/Corpus">002556</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002556</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.</title><author><name sortKey="Kan, Biao" sort="Kan, Biao" uniqKey="Kan B" first="Biao" last="Kan">Biao Kan</name><affiliation><nlm:affiliation>State Key Laboratory for Infectious Disease Prevention and Control (China CDC), Chinese Center for Disease Control and Prevention, P.O. Box 5, Changping, Beijing 102206, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Wang, Ming" sort="Wang, Ming" uniqKey="Wang M" first="Ming" last="Wang">Ming Wang</name></author><author><name sortKey="Jing, Huaiqi" sort="Jing, Huaiqi" uniqKey="Jing H" first="Huaiqi" last="Jing">Huaiqi Jing</name></author><author><name sortKey="Xu, Huifang" sort="Xu, Huifang" uniqKey="Xu H" first="Huifang" last="Xu">Huifang Xu</name></author><author><name sortKey="Jiang, Xiugao" sort="Jiang, Xiugao" uniqKey="Jiang X" first="Xiugao" last="Jiang">Xiugao Jiang</name></author><author><name sortKey="Yan, Meiying" sort="Yan, Meiying" uniqKey="Yan M" first="Meiying" last="Yan">Meiying Yan</name></author><author><name sortKey="Liang, Weili" sort="Liang, Weili" uniqKey="Liang W" first="Weili" last="Liang">Weili Liang</name></author><author><name sortKey="Zheng, Han" sort="Zheng, Han" uniqKey="Zheng H" first="Han" last="Zheng">Han Zheng</name></author><author><name sortKey="Wan, Kanglin" sort="Wan, Kanglin" uniqKey="Wan K" first="Kanglin" last="Wan">Kanglin Wan</name></author><author><name sortKey="Liu, Qiyong" sort="Liu, Qiyong" uniqKey="Liu Q" first="Qiyong" last="Liu">Qiyong Liu</name></author><author><name sortKey="Cui, Buyun" sort="Cui, Buyun" uniqKey="Cui B" first="Buyun" last="Cui">Buyun Cui</name></author><author><name sortKey="Xu, Yanmei" sort="Xu, Yanmei" uniqKey="Xu Y" first="Yanmei" last="Xu">Yanmei Xu</name></author><author><name sortKey="Zhang, Enmin" sort="Zhang, Enmin" uniqKey="Zhang E" first="Enmin" last="Zhang">Enmin Zhang</name></author><author><name sortKey="Wang, Hongxia" sort="Wang, Hongxia" uniqKey="Wang H" first="Hongxia" last="Wang">Hongxia Wang</name></author><author><name sortKey="Ye, Jingrong" sort="Ye, Jingrong" uniqKey="Ye J" first="Jingrong" last="Ye">Jingrong Ye</name></author><author><name sortKey="Li, Guichang" sort="Li, Guichang" uniqKey="Li G" first="Guichang" last="Li">Guichang Li</name></author><author><name sortKey="Li, Machao" sort="Li, Machao" uniqKey="Li M" first="Machao" last="Li">Machao Li</name></author><author><name sortKey="Cui, Zhigang" sort="Cui, Zhigang" uniqKey="Cui Z" first="Zhigang" last="Cui">Zhigang Cui</name></author><author><name sortKey="Qi, Xiaobao" sort="Qi, Xiaobao" uniqKey="Qi X" first="Xiaobao" last="Qi">Xiaobao Qi</name></author><author><name sortKey="Chen, Kai" sort="Chen, Kai" uniqKey="Chen K" first="Kai" last="Chen">Kai Chen</name></author><author><name sortKey="Du, Lin" sort="Du, Lin" uniqKey="Du L" first="Lin" last="Du">Lin Du</name></author><author><name sortKey="Gao, Kai" sort="Gao, Kai" uniqKey="Gao K" first="Kai" last="Gao">Kai Gao</name></author><author><name sortKey="Zhao, Yu Teng" sort="Zhao, Yu Teng" uniqKey="Zhao Y" first="Yu-Teng" last="Zhao">Yu-Teng Zhao</name></author><author><name sortKey="Zou, Xiao Zhong" sort="Zou, Xiao Zhong" uniqKey="Zou X" first="Xiao-Zhong" last="Zou">Xiao-Zhong Zou</name></author><author><name sortKey="Feng, Yue Ju" sort="Feng, Yue Ju" uniqKey="Feng Y" first="Yue-Ju" last="Feng">Yue-Ju Feng</name></author><author><name sortKey="Gao, Yu Fan" sort="Gao, Yu Fan" uniqKey="Gao Y" first="Yu-Fan" last="Gao">Yu-Fan Gao</name></author><author><name sortKey="Hai, Rong" sort="Hai, Rong" uniqKey="Hai R" first="Rong" last="Hai">Rong Hai</name></author><author><name sortKey="Yu, Dongzhen" sort="Yu, Dongzhen" uniqKey="Yu D" first="Dongzhen" last="Yu">Dongzhen Yu</name></author><author><name sortKey="Guan, Yi" sort="Guan, Yi" uniqKey="Guan Y" first="Yi" last="Guan">Yi Guan</name></author><author><name sortKey="Xu, Jianguo" sort="Xu, Jianguo" uniqKey="Xu J" first="Jianguo" last="Xu">Jianguo Xu</name></author></analytic><series><title level="j">Journal of virology</title><idno type="ISSN">0022-538X</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Animals, Domestic (virology)</term><term>China (epidemiology)</term><term>Disease Outbreaks</term><term>Disease Reservoirs</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Humans</term><term>Membrane Glycoproteins (genetics)</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Raccoon Dogs (virology)</term><term>SARS Virus (classification)</term><term>SARS Virus (genetics)</term><term>SARS Virus (isolation & purification)</term><term>Sequence Homology, Amino Acid</term><term>Severe Acute Respiratory Syndrome (epidemiology)</term><term>Severe Acute Respiratory Syndrome (transmission)</term><term>Severe Acute Respiratory Syndrome (virology)</term><term>Spike Glycoprotein, Coronavirus</term><term>Viral Envelope Proteins (genetics)</term><term>Viverridae (virology)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Glycoproteins</term><term>Viral Envelope Proteins</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Animals, Domestic</term><term>Raccoon Dogs</term><term>Severe Acute Respiratory Syndrome</term><term>Viverridae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Disease Outbreaks</term><term>Disease Reservoirs</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Humans</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Homology, Amino Acid</term><term>Spike Glycoprotein, Coronavirus</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Massive numbers of palm civets were culled to remove sources for the reemergence of severe acute respiratory syndrome (SARS) in Guangdong Province, China, in January 2004, following SARS coronavirus detection in market animals. The virus was identified in all 91 palm civets and 15 raccoon dogs of animal market origin sampled prior to culling, but not in 1,107 palm civets later sampled at 25 farms, spread over 12 provinces, which were claimed to be the source of traded animals. Twenty-seven novel signature variation residues (SNVs) were identified on the spike gene and were analyzed for their phylogenetic relationships, based on 17 sequences obtained from animals in our study and from other published studies. Analysis indicated that the virus in palm civets at the live-animal market had evolved to infect humans. The evolutionary starting point was a prototype group consisting of three viral sequences of animal origin. Initially, seven SNV sites caused six amino acid changes, at positions 147, 228, 240, 479, 821, and 1080 of the spike protein, to generate low-pathogenicity viruses. One of these was linked to the first SARS patient in the 2003-2004 period. A further 14 SNVs caused 11 amino acid residue changes, at positions 360, 462, 472, 480, 487, 609, 613, 665, 743, 765, and 1163. The resulting high-pathogenicity groups were responsible for infections during the so-called early-phase epidemic of 2003. Finally, the remaining six SNVs caused four amino acid changes, at positions 227, 244, 344, and 778, which resulted in the group of viruses responsible for the global epidemic.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16140765</PMID><DateCompleted><Year>2005</Year><Month>10</Month><Day>05</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0022-538X</ISSN><JournalIssue CitedMedium="Print"><Volume>79</Volume><Issue>18</Issue><PubDate><Year>2005</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Journal of virology</Title><ISOAbbreviation>J. Virol.</ISOAbbreviation></Journal><ArticleTitle>Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.</ArticleTitle><Pagination><MedlinePgn>11892-900</MedlinePgn></Pagination><Abstract><AbstractText>Massive numbers of palm civets were culled to remove sources for the reemergence of severe acute respiratory syndrome (SARS) in Guangdong Province, China, in January 2004, following SARS coronavirus detection in market animals. The virus was identified in all 91 palm civets and 15 raccoon dogs of animal market origin sampled prior to culling, but not in 1,107 palm civets later sampled at 25 farms, spread over 12 provinces, which were claimed to be the source of traded animals. Twenty-seven novel signature variation residues (SNVs) were identified on the spike gene and were analyzed for their phylogenetic relationships, based on 17 sequences obtained from animals in our study and from other published studies. Analysis indicated that the virus in palm civets at the live-animal market had evolved to infect humans. The evolutionary starting point was a prototype group consisting of three viral sequences of animal origin. Initially, seven SNV sites caused six amino acid changes, at positions 147, 228, 240, 479, 821, and 1080 of the spike protein, to generate low-pathogenicity viruses. One of these was linked to the first SARS patient in the 2003-2004 period. A further 14 SNVs caused 11 amino acid residue changes, at positions 360, 462, 472, 480, 487, 609, 613, 665, 743, 765, and 1163. The resulting high-pathogenicity groups were responsible for infections during the so-called early-phase epidemic of 2003. Finally, the remaining six SNVs caused four amino acid changes, at positions 227, 244, 344, and 778, which resulted in the group of viruses responsible for the global epidemic.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kan</LastName><ForeName>Biao</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>State Key Laboratory for Infectious Disease Prevention and Control (China CDC), Chinese Center for Disease Control and Prevention, P.O. Box 5, Changping, Beijing 102206, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Ming</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Jing</LastName><ForeName>Huaiqi</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Huifang</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Xiugao</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Yan</LastName><ForeName>Meiying</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Liang</LastName><ForeName>Weili</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Zheng</LastName><ForeName>Han</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Wan</LastName><ForeName>Kanglin</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Qiyong</ForeName><Initials>Q</Initials></Author><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Buyun</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Yanmei</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Enmin</ForeName><Initials>E</Initials></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Hongxia</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Ye</LastName><ForeName>Jingrong</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Guichang</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Machao</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Zhigang</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Qi</LastName><ForeName>Xiaobao</ForeName><Initials>X</Initials></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Kai</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Du</LastName><ForeName>Lin</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Kai</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Yu-Teng</ForeName><Initials>YT</Initials></Author><Author ValidYN="Y"><LastName>Zou</LastName><ForeName>Xiao-Zhong</ForeName><Initials>XZ</Initials></Author><Author ValidYN="Y"><LastName>Feng</LastName><ForeName>Yue-Ju</ForeName><Initials>YJ</Initials></Author><Author ValidYN="Y"><LastName>Gao</LastName><ForeName>Yu-Fan</ForeName><Initials>YF</Initials></Author><Author ValidYN="Y"><LastName>Hai</LastName><ForeName>Rong</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Yu</LastName><ForeName>Dongzhen</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Guan</LastName><ForeName>Yi</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Jianguo</ForeName><Initials>J</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY304486</AccessionNumber><AccessionNumber>AY572034</AccessionNumber><AccessionNumber>AY572038</AccessionNumber><AccessionNumber>AY686855</AccessionNumber><AccessionNumber>AY686862</AccessionNumber><AccessionNumber>AY686863</AccessionNumber><AccessionNumber>AY686864</AccessionNumber><AccessionNumber>AY686866</AccessionNumber><AccessionNumber>AY686867</AccessionNumber><AccessionNumber>AY686869</AccessionNumber><AccessionNumber>AY686871</AccessionNumber><AccessionNumber>AY686872</AccessionNumber><AccessionNumber>AY687354</AccessionNumber><AccessionNumber>AY687357</AccessionNumber><AccessionNumber>AY687358</AccessionNumber><AccessionNumber>AY687361</AccessionNumber><AccessionNumber>AY687365</AccessionNumber><AccessionNumber>AY687370</AccessionNumber></AccessionNumberList></DataBank></DataBankList><GrantList CompleteYN="Y"><Grant><GrantID>U19 AI051915</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>U19 AI51915</GrantID><Acronym>AI</Acronym><Agency>NIAID NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013487">Research Support, U.S. Gov't, P.H.S.</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Virol</MedlineTA><NlmUniqueID>0113724</NlmUniqueID><ISSNLinking>0022-538X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D008562">Membrane Glycoproteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D064370">Spike Glycoprotein, Coronavirus</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014759">Viral Envelope Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C578557">spike glycoprotein, SARS-CoV</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>J Virol. 2006 Aug;80(15):7786</RefSource></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000829" MajorTopicYN="N">Animals, Domestic</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004197" MajorTopicYN="N">Disease Reservoirs</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008562" MajorTopicYN="N">Membrane Glycoproteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D046031" MajorTopicYN="N">Raccoon Dogs</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045473" MajorTopicYN="N">SARS Virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045169" MajorTopicYN="N">Severe Acute Respiratory Syndrome</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D064370" MajorTopicYN="N">Spike Glycoprotein, Coronavirus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014759" MajorTopicYN="N">Viral Envelope Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045949" MajorTopicYN="N">Viverridae</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>9</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>10</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>9</Month><Day>6</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">16140765</ArticleId><ArticleId IdType="pii">79/18/11892</ArticleId><ArticleId IdType="doi">10.1128/JVI.79.18.11892-11900.2005</ArticleId><ArticleId IdType="pmc">PMC1212604</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Lancet. 2003 Nov 29;362(9398):1807-8</Citation><ArticleIdList><ArticleId IdType="pubmed">14654320</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2003 May 15;348(20):1953-66</Citation><ArticleIdList><ArticleId IdType="pubmed">12690092</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2003 May 30;300(5624):1394-9</Citation><ArticleIdList><ArticleId IdType="pubmed">12730500</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2003 May 30;300(5624):1399-404</Citation><ArticleIdList><ArticleId IdType="pubmed">12730501</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 2003 May 24;361(9371):1767-72</Citation><ArticleIdList><ArticleId IdType="pubmed">12781535</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 2003 May 24;361(9371):1779-85</Citation><ArticleIdList><ArticleId IdType="pubmed">12781537</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2003 Jul 10;349(2):187-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12853594</ArticleId></ArticleIdList></Reference><Reference><Citation>Exp Biol Med (Maywood). 2003 Jul;228(7):866-73</Citation><ArticleIdList><ArticleId IdType="pubmed">12876307</ArticleId></ArticleIdList></Reference><Reference><Citation>Chin Med J (Engl). 2003 Jul;116(7):988-90</Citation><ArticleIdList><ArticleId IdType="pubmed">12890368</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2003 Sep;84(Pt 9):2305-15</Citation><ArticleIdList><ArticleId IdType="pubmed">12917450</ArticleId></ArticleIdList></Reference><Reference><Citation>Chin Med J (Engl). 2003 Sep;116(9):1288-92</Citation><ArticleIdList><ArticleId IdType="pubmed">14527350</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2003 Oct 10;302(5643):276-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12958366</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2003 Oct 30;425(6961):915</Citation><ArticleIdList><ArticleId IdType="pubmed">14586458</ArticleId></ArticleIdList></Reference><Reference><Citation>Clin Chem. 2003 Dec;49(12):1976-80</Citation><ArticleIdList><ArticleId IdType="pubmed">14633867</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2003 Dec 11;426(6967):658-61</Citation><ArticleIdList><ArticleId IdType="pubmed">14668863</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 2004 Jan 10;363(9403):99-104</Citation><ArticleIdList><ArticleId IdType="pubmed">14726162</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2004 Jan 16;303(5656):292</Citation><ArticleIdList><ArticleId IdType="pubmed">14726558</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 2004 Jan 17;363(9404):234-6</Citation><ArticleIdList><ArticleId IdType="pubmed">14738798</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Microbiol. 2003 Sep 21;3:20</Citation><ArticleIdList><ArticleId IdType="pubmed">14499001</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2536-41</Citation><ArticleIdList><ArticleId IdType="pubmed">14983044</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2542-7</Citation><ArticleIdList><ArticleId IdType="pubmed">14983045</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2004 Mar 12;303(5664):1666-9</Citation><ArticleIdList><ArticleId IdType="pubmed">14752165</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Microbiol. 2003 Dec;1(3):209-18</Citation><ArticleIdList><ArticleId IdType="pubmed">15035025</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2004 Jun 15;102(2):215-20</Citation><ArticleIdList><ArticleId IdType="pubmed">15084404</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2004 Oct;10(10):1774-81</Citation><ArticleIdList><ArticleId IdType="pubmed">15504263</ArticleId></ArticleIdList></Reference><Reference><Citation>Genomics Proteomics Bioinformatics. 2003 May;1(2):101-7</Citation><ArticleIdList><ArticleId IdType="pubmed">15626340</ArticleId></ArticleIdList></Reference><Reference><Citation>Genomics Proteomics Bioinformatics. 2003 Aug;1(3):180-92</Citation><ArticleIdList><ArticleId IdType="pubmed">15629030</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2004 Dec;10(12):2244-8</Citation><ArticleIdList><ArticleId IdType="pubmed">15663874</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2005 Feb;79(4):2620-5</Citation><ArticleIdList><ArticleId IdType="pubmed">15681462</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2430-5</Citation><ArticleIdList><ArticleId IdType="pubmed">15695582</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2005 May;79(10):5900-6</Citation><ArticleIdList><ArticleId IdType="pubmed">15857975</ArticleId></ArticleIdList></Reference><Reference><Citation>EMBO J. 2005 Apr 20;24(8):1634-43</Citation><ArticleIdList><ArticleId IdType="pubmed">15791205</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002556 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 002556 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:16140765
|texte= Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:16140765" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a SrasV1
| This area was generated with Dilib version V0.6.33. |  |