Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.
Identifieur interne : 002308 ( PubMed/Corpus ); précédent : 002307; suivant : 002309Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.
Auteurs : Peng Shi ; Li Yu ; Yun-Xin Fu ; Jing-Fei Huang ; Ke-Qin Zhang ; Ya-Ping ZhangSource :
- Cell research [ 1001-0602 ] ; 2006.
English descriptors
- KwdEn :
- MESH :
- chemical , chemical synthesis : Viral Vaccines.
- genetics : Amino Acid Substitution, Infectious bronchitis virus, SARS Virus.
- Biological Evolution.
Abstract
For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.
DOI: 10.1038/sj.cr.7310041
PubMed: 16541132
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pubmed:16541132Le document en format XML
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<author><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name>
<affiliation><nlm:affiliation>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation>
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<author><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name>
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<author><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name>
</author>
<author><name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name>
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<author><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name>
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<author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name>
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<affiliation><nlm:affiliation>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation>
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<author><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name>
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<author><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name>
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<author><name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name>
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<author><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name>
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<author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name>
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<series><title level="j">Cell research</title>
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<term>SARS Virus (genetics)</term>
<term>Viral Vaccines (chemical synthesis)</term>
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<front><div type="abstract" xml:lang="en">For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</div>
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<Abstract><AbstractText>For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</AbstractText>
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<ReferenceList><Reference><Citation>Avian Dis. 1992 Oct-Dec;36(4):903-15</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1336663</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Science. 2003 Oct 10;302(5643):276-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12958366</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Science. 2004 Mar 12;303(5664):1666-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14752165</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1981 Jun;78(6):3824-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">6167991</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Genetics. 2000 May;155(1):431-49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10790415</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Comput Appl Biosci. 1997 Oct;13(5):555-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9367129</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virology. 2003 Feb 15;306(2):376-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12642110</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7712-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9223253</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>J Biol Chem. 2004 Jan 30;279(5):3197-201</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14670965</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virus Res. 1988 Sep;11(2):141-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2462314</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>J Gen Virol. 1986 Jul;67 ( Pt 7):1443-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">3014054</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Evolution. 1985 Jul;39(4):783-791</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28561359</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2430-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15695582</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Bioinformatics. 2001 Dec;17(12):1244-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11751241</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7984417</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virus Res. 2001 Nov 28;80(1-2):33-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11597746</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
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