Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.
Identifieur interne : 002195 ( PubMed/Checkpoint ); précédent : 002194; suivant : 002196Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.
Auteurs : Peng Shi [République populaire de Chine] ; Li Yu ; Yun-Xin Fu ; Jing-Fei Huang ; Ke-Qin Zhang ; Ya-Ping ZhangSource :
- Cell research [ 1001-0602 ] ; 2006.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Substitution d'acide aminé, Virus de la bronchite infectieuse, Virus du SRAS.
- synthèse chimique : Vaccins antiviraux.
- Évolution biologique.
English descriptors
- KwdEn :
- MESH :
- chemical , chemical synthesis : Viral Vaccines.
- genetics : Amino Acid Substitution, Infectious bronchitis virus, SARS Virus.
- Biological Evolution.
Abstract
For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.
DOI: 10.1038/sj.cr.7310041
PubMed: 16541132
Affiliations:
Links toward previous steps (curation, corpus...)
Links to Exploration step
pubmed:16541132Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.</title>
<author><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea>
<wicri:noRegion>Kunming 650223</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name>
</author>
<author><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name>
</author>
<author><name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name>
</author>
<author><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name>
</author>
<author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2006">2006</date>
<idno type="RBID">pubmed:16541132</idno>
<idno type="pmid">16541132</idno>
<idno type="doi">10.1038/sj.cr.7310041</idno>
<idno type="wicri:Area/PubMed/Corpus">002308</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002308</idno>
<idno type="wicri:Area/PubMed/Curation">002308</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002308</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002195</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002195</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.</title>
<author><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name>
<affiliation wicri:level="1"><nlm:affiliation>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223</wicri:regionArea>
<wicri:noRegion>Kunming 650223</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name>
</author>
<author><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name>
</author>
<author><name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name>
</author>
<author><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name>
</author>
<author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name>
</author>
</analytic>
<series><title level="j">Cell research</title>
<idno type="ISSN">1001-0602</idno>
<imprint><date when="2006" type="published">2006</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Substitution (genetics)</term>
<term>Biological Evolution</term>
<term>Infectious bronchitis virus (genetics)</term>
<term>SARS Virus (genetics)</term>
<term>Viral Vaccines (chemical synthesis)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Substitution d'acide aminé (génétique)</term>
<term>Vaccins antiviraux (synthèse chimique)</term>
<term>Virus de la bronchite infectieuse (génétique)</term>
<term>Virus du SRAS (génétique)</term>
<term>Évolution biologique</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemical synthesis" xml:lang="en"><term>Viral Vaccines</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Amino Acid Substitution</term>
<term>Infectious bronchitis virus</term>
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Substitution d'acide aminé</term>
<term>Virus de la bronchite infectieuse</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" qualifier="synthèse chimique" xml:lang="fr"><term>Vaccins antiviraux</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biological Evolution</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Évolution biologique</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16541132</PMID>
<DateCompleted><Year>2006</Year>
<Month>06</Month>
<Day>23</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>03</Month>
<Day>25</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Print">1001-0602</ISSN>
<JournalIssue CitedMedium="Print"><Volume>16</Volume>
<Issue>3</Issue>
<PubDate><Year>2006</Year>
<Month>Mar</Month>
</PubDate>
</JournalIssue>
<Title>Cell research</Title>
<ISOAbbreviation>Cell Res.</ISOAbbreviation>
</Journal>
<ArticleTitle>Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis.</ArticleTitle>
<Pagination><MedlinePgn>323-7</MedlinePgn>
</Pagination>
<Abstract><AbstractText>For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS Coronavirus (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Shi</LastName>
<ForeName>Peng</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Li</ForeName>
<Initials>L</Initials>
</Author>
<Author ValidYN="Y"><LastName>Fu</LastName>
<ForeName>Yun-Xin</ForeName>
<Initials>YX</Initials>
</Author>
<Author ValidYN="Y"><LastName>Huang</LastName>
<ForeName>Jing-Fei</ForeName>
<Initials>JF</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Ke-Qin</ForeName>
<Initials>KQ</Initials>
</Author>
<Author ValidYN="Y"><LastName>Zhang</LastName>
<ForeName>Ya-ping</ForeName>
<Initials>YP</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Cell Res</MedlineTA>
<NlmUniqueID>9425763</NlmUniqueID>
<ISSNLinking>1001-0602</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014765">Viral Vaccines</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D019943" MajorTopicYN="N">Amino Acid Substitution</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005075" MajorTopicYN="N">Biological Evolution</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001351" MajorTopicYN="N">Infectious bronchitis virus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D045473" MajorTopicYN="N">SARS Virus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014765" MajorTopicYN="N">Viral Vaccines</DescriptorName>
<QualifierName UI="Q000138" MajorTopicYN="N">chemical synthesis</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2006</Year>
<Month>3</Month>
<Day>17</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2006</Year>
<Month>6</Month>
<Day>24</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2006</Year>
<Month>3</Month>
<Day>17</Day>
<Hour>9</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">16541132</ArticleId>
<ArticleId IdType="pii">7310041</ArticleId>
<ArticleId IdType="doi">10.1038/sj.cr.7310041</ArticleId>
<ArticleId IdType="pmc">PMC7091586</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Avian Dis. 1992 Oct-Dec;36(4):903-15</Citation>
<ArticleIdList><ArticleId IdType="pubmed">1336663</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Science. 2003 Oct 10;302(5643):276-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12958366</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Science. 2004 Mar 12;303(5664):1666-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14752165</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1981 Jun;78(6):3824-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">6167991</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Genetics. 2000 May;155(1):431-49</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10790415</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Comput Appl Biosci. 1997 Oct;13(5):555-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9367129</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virology. 2003 Feb 15;306(2):376-84</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12642110</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7712-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9223253</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>J Biol Chem. 2004 Jan 30;279(5):3197-201</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14670965</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virus Res. 1988 Sep;11(2):141-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">2462314</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>J Gen Virol. 1986 Jul;67 ( Pt 7):1443-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">3014054</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Evolution. 1985 Jul;39(4):783-791</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28561359</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2430-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15695582</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Bioinformatics. 2001 Dec;17(12):1244-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11751241</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</Citation>
<ArticleIdList><ArticleId IdType="pubmed">7984417</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
<ReferenceList><Reference><Citation>Virus Res. 2001 Nov 28;80(1-2):33-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11597746</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
</list>
<tree><noCountry><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name>
<name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name>
<name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name>
<name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name>
<name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name>
</noCountry>
<country name="République populaire de Chine"><noRegion><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/PubMed/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002195 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd -nk 002195 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= PubMed |étape= Checkpoint |type= RBID |clé= pubmed:16541132 |texte= Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Checkpoint/RBID.i -Sk "pubmed:16541132" \ | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Checkpoint/biblio.hfd \ | NlmPubMed2Wicri -a SrasV1
![]() | This area was generated with Dilib version V0.6.33. | ![]() |