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A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium

Identifieur interne : 001403 ( Pmc/Checkpoint ); précédent : 001402; suivant : 001404

A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium

Auteurs : Elien Moës ; Leen Vijgen ; Els Keyaerts ; Kalina Zlateva ; Sandra Li ; Piet Maes ; Krzysztof Pyrc ; Ben Berkhout ; Lia Van Der Hoek ; Marc Van Ranst

Source :

RBID : PMC:549190

Abstract

Background

Four human coronaviruses are currently known to infect the respiratory tract: human coronaviruses OC43 (HCoV-OC43) and 229E (HCoV-229E), SARS associated coronavirus (SARS-CoV) and the recently identified human coronavirus NL63 (HCoV-NL63). In this study we explored the incidence of HCoV-NL63 infection in children diagnosed with respiratory tract infections in Belgium.

Methods

Samples from children hospitalized with respiratory diseases during the winter seasons of 2003 and 2004 were evaluated for the presence of HCoV-NL63 using a optimized pancoronavirus RT-PCR assay.

Results

Seven HCoV-NL63 positive samples were identified, six were collected during January/February 2003 and one at the end of February 2004.

Conclusions

Our results support the notation that HCoV-NL63 can cause serious respiratory symptoms in children. Sequence analysis of the S gene showed that our isolates could be classified into two subtypes corresponding to the two prototype HCoV-NL63 sequences isolated in The Netherlands in 1988 and 2003, indicating that these two subtypes may currently be cocirculating.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2334-5-6) contains supplementary material, which is available to authorized users.


Url:
DOI: 10.1186/1471-2334-5-6
PubMed: 15686594
PubMed Central: 549190


Affiliations:


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PMC:549190

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<title>Background</title>
<p>Four human coronaviruses are currently known to infect the respiratory tract: human coronaviruses OC43 (HCoV-OC43) and 229E (HCoV-229E), SARS associated coronavirus (SARS-CoV) and the recently identified human coronavirus NL63 (HCoV-NL63). In this study we explored the incidence of HCoV-NL63 infection in children diagnosed with respiratory tract infections in Belgium.</p>
</sec>
<sec>
<title>Methods</title>
<p>Samples from children hospitalized with respiratory diseases during the winter seasons of 2003 and 2004 were evaluated for the presence of HCoV-NL63 using a optimized pancoronavirus RT-PCR assay.</p>
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<title>Results</title>
<p>Seven HCoV-NL63 positive samples were identified, six were collected during January/February 2003 and one at the end of February 2004.</p>
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<sec>
<title>Conclusions</title>
<p>Our results support the notation that HCoV-NL63 can cause serious respiratory symptoms in children. Sequence analysis of the S gene showed that our isolates could be classified into two subtypes corresponding to the two prototype HCoV-NL63 sequences isolated in The Netherlands in 1988 and 2003, indicating that these two subtypes may currently be cocirculating.</p>
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<name sortKey="Nicholas, Kb" uniqKey="Nicholas K">KB Nicholas</name>
</author>
<author>
<name sortKey="Nicholas, Hb" uniqKey="Nicholas H">HB Nicholas</name>
</author>
<author>
<name sortKey="Deerfield, Dw" uniqKey="Deerfield D">DW Deerfield</name>
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<author>
<name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name>
</author>
<author>
<name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name>
</author>
<author>
<name sortKey="Jakobsen, Ib" uniqKey="Jakobsen I">IB Jakobsen</name>
</author>
<author>
<name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
</analytic>
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</listBibl>
</div1>
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</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">BMC Infect Dis</journal-id>
<journal-id journal-id-type="iso-abbrev">BMC Infect. Dis</journal-id>
<journal-title-group>
<journal-title>BMC Infectious Diseases</journal-title>
</journal-title-group>
<issn pub-type="epub">1471-2334</issn>
<publisher>
<publisher-name>BioMed Central</publisher-name>
<publisher-loc>London</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">15686594</article-id>
<article-id pub-id-type="pmc">549190</article-id>
<article-id pub-id-type="publisher-id">154</article-id>
<article-id pub-id-type="doi">10.1186/1471-2334-5-6</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>A novel pancoronavirus RT-PCR assay: frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Moës</surname>
<given-names>Elien</given-names>
</name>
<address>
<email>elien.moes@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Vijgen</surname>
<given-names>Leen</given-names>
</name>
<address>
<email>leen.vijgen@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Keyaerts</surname>
<given-names>Els</given-names>
</name>
<address>
<email>els.keyaerts@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zlateva</surname>
<given-names>Kalina</given-names>
</name>
<address>
<email>kalina.zlateva@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Sandra</given-names>
</name>
<address>
<email>sandra.li@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Maes</surname>
<given-names>Piet</given-names>
</name>
<address>
<email>piet.3.maes@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pyrc</surname>
<given-names>Krzysztof</given-names>
</name>
<address>
<email>k.a.pyrc@amc.uva.nl</email>
</address>
<xref ref-type="aff" rid="Aff2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Berkhout</surname>
<given-names>Ben</given-names>
</name>
<address>
<email>b.berkhout@amc.uva.nl</email>
</address>
<xref ref-type="aff" rid="Aff2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>van der Hoek</surname>
<given-names>Lia</given-names>
</name>
<address>
<email>c.m.vanderhoek@amc.uva.nl</email>
</address>
<xref ref-type="aff" rid="Aff2">2</xref>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Van Ranst</surname>
<given-names>Marc</given-names>
</name>
<address>
<email>marc.vanranst@uz.kuleuven.ac.be</email>
</address>
<xref ref-type="aff" rid="Aff1">1</xref>
</contrib>
<aff id="Aff1">
<label>1</label>
<institution-wrap>
<institution-id institution-id-type="GRID">grid.5596.f</institution-id>
<institution-id institution-id-type="ISNI">0000000106687884</institution-id>
<institution>Laboratory of Clinical & Epidemiological Virology, Department of Microbiology & Immunology, Rega Institute for Medical Research,</institution>
<institution>University of Leuven,</institution>
</institution-wrap>
Belgium</aff>
<aff id="Aff2">
<label>2</label>
<institution-wrap>
<institution-id institution-id-type="GRID">grid.7177.6</institution-id>
<institution-id institution-id-type="ISNI">0000000084992262</institution-id>
<institution>Department of Human Retrovirology, Academic Medical Center,</institution>
<institution>University of Amsterdam,</institution>
</institution-wrap>
The Netherlands</aff>
</contrib-group>
<pub-date pub-type="epub">
<day>01</day>
<month>2</month>
<year>2005</year>
</pub-date>
<pub-date pub-type="pmc-release">
<day>01</day>
<month>2</month>
<year>2005</year>
</pub-date>
<pub-date pub-type="collection">
<year>2005</year>
</pub-date>
<volume>5</volume>
<elocation-id>6</elocation-id>
<history>
<date date-type="received">
<day>13</day>
<month>10</month>
<year>2004</year>
</date>
<date date-type="accepted">
<day>01</day>
<month>2</month>
<year>2005</year>
</date>
</history>
<permissions>
<copyright-statement>© Moës et al; licensee BioMed Central Ltd. 2005</copyright-statement>
<license>
<license-p>This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.</license-p>
</license>
</permissions>
<abstract id="Abs1">
<sec>
<title>Background</title>
<p>Four human coronaviruses are currently known to infect the respiratory tract: human coronaviruses OC43 (HCoV-OC43) and 229E (HCoV-229E), SARS associated coronavirus (SARS-CoV) and the recently identified human coronavirus NL63 (HCoV-NL63). In this study we explored the incidence of HCoV-NL63 infection in children diagnosed with respiratory tract infections in Belgium.</p>
</sec>
<sec>
<title>Methods</title>
<p>Samples from children hospitalized with respiratory diseases during the winter seasons of 2003 and 2004 were evaluated for the presence of HCoV-NL63 using a optimized pancoronavirus RT-PCR assay.</p>
</sec>
<sec>
<title>Results</title>
<p>Seven HCoV-NL63 positive samples were identified, six were collected during January/February 2003 and one at the end of February 2004.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>Our results support the notation that HCoV-NL63 can cause serious respiratory symptoms in children. Sequence analysis of the S gene showed that our isolates could be classified into two subtypes corresponding to the two prototype HCoV-NL63 sequences isolated in The Netherlands in 1988 and 2003, indicating that these two subtypes may currently be cocirculating.</p>
</sec>
<sec>
<title>Electronic supplementary material</title>
<p>The online version of this article (doi:10.1186/1471-2334-5-6) contains supplementary material, which is available to authorized users.</p>
</sec>
</abstract>
<kwd-group xml:lang="en">
<title>Keywords</title>
<kwd>Respiratory Syncytial Virus</kwd>
<kwd>Severe Acute Respiratory Syndrome</kwd>
<kwd>Porcine Epidemic Diarrhea Virus</kwd>
<kwd>Severe Acute Respiratory Syndrome</kwd>
<kwd>Nasopharyngeal Aspirate</kwd>
</kwd-group>
<custom-meta-group>
<custom-meta>
<meta-name>issue-copyright-statement</meta-name>
<meta-value>© The Author(s) 2005</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
</front>
</pmc>
<affiliations>
<list></list>
<tree>
<noCountry>
<name sortKey="Berkhout, Ben" sort="Berkhout, Ben" uniqKey="Berkhout B" first="Ben" last="Berkhout">Ben Berkhout</name>
<name sortKey="Keyaerts, Els" sort="Keyaerts, Els" uniqKey="Keyaerts E" first="Els" last="Keyaerts">Els Keyaerts</name>
<name sortKey="Li, Sandra" sort="Li, Sandra" uniqKey="Li S" first="Sandra" last="Li">Sandra Li</name>
<name sortKey="Maes, Piet" sort="Maes, Piet" uniqKey="Maes P" first="Piet" last="Maes">Piet Maes</name>
<name sortKey="Moes, Elien" sort="Moes, Elien" uniqKey="Moes E" first="Elien" last="Moës">Elien Moës</name>
<name sortKey="Pyrc, Krzysztof" sort="Pyrc, Krzysztof" uniqKey="Pyrc K" first="Krzysztof" last="Pyrc">Krzysztof Pyrc</name>
<name sortKey="Van Der Hoek, Lia" sort="Van Der Hoek, Lia" uniqKey="Van Der Hoek L" first="Lia" last="Van Der Hoek">Lia Van Der Hoek</name>
<name sortKey="Van Ranst, Marc" sort="Van Ranst, Marc" uniqKey="Van Ranst M" first="Marc" last="Van Ranst">Marc Van Ranst</name>
<name sortKey="Vijgen, Leen" sort="Vijgen, Leen" uniqKey="Vijgen L" first="Leen" last="Vijgen">Leen Vijgen</name>
<name sortKey="Zlateva, Kalina" sort="Zlateva, Kalina" uniqKey="Zlateva K" first="Kalina" last="Zlateva">Kalina Zlateva</name>
</noCountry>
</tree>
</affiliations>
</record>

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