Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis
Identifieur interne : 001133 ( Pmc/Checkpoint ); précédent : 001132; suivant : 001134Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis
Auteurs : Peng Shi [République populaire de Chine] ; Li Yu [République populaire de Chine] ; Yun-Xin Fu ; Jing-Fei Huang [République populaire de Chine] ; Ke-Qin Zhang [République populaire de Chine] ; Ya-Ping Zhang [République populaire de Chine]Source :
- Cell Research [ 1001-0602 ] ; 2006.
Abstract
For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS
Url:
DOI: 10.1038/sj.cr.7310041
PubMed: 16541132
PubMed Central: 7091586
Affiliations:
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7072</institution-id><institution>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences,</institution></institution-wrap>Kunming, 650223 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.440773.3</institution-id><institution>Laboratory for Conservation and Utilization of Bio-resource, Yunnan University,</institution></institution-wrap>Kunming, 650091 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id 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Huang</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.419010.d</institution-id><institution-id institution-id-type="ISNI">0000 0004 1792 7072</institution-id><institution>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences,</institution></institution-wrap>Kunming, 650223 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.440773.3</institution-id><institution>Laboratory for Conservation and Utilization of Bio-resource, Yunnan University,</institution></institution-wrap>Kunming, 650091 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation></author><author><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.419010.d</institution-id><institution-id institution-id-type="ISNI">0000 0004 1792 7072</institution-id><institution>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences,</institution></institution-wrap>Kunming, 650223 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.440773.3</institution-id><institution>Laboratory for Conservation and Utilization of Bio-resource, Yunnan University,</institution></institution-wrap>Kunming, 650091 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Kunming</wicri:regionArea></affiliation></author></analytic><series><title level="j">Cell Research</title><idno type="ISSN">1001-0602</idno><idno type="eISSN">1748-7838</idno><imprint><date when="2006">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS <italic>Coronavirus</italic> (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="King, Dj" uniqKey="King D">DJ King</name></author><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Collisson, Ew" uniqKey="Collisson E">EW Collisson</name></author><author><name sortKey="Parr, Rl" uniqKey="Parr R">RL Parr</name></author><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name></author><author><name sortKey="Williams, Ak" uniqKey="Williams A">AK Williams</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author><author><name sortKey="Naqii, Sa" uniqKey="Naqii S">SA NaqiI</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author><author><name sortKey="Davis, Pj" uniqKey="Davis P">PJ Davis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author><author><name sortKey="Davis, Pj" uniqKey="Davis P">PJ Davis</name></author><author><name sortKey="Mockett, Ap" uniqKey="Mockett A">AP Mockett</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lee, Cw" uniqKey="Lee C">CW Lee</name></author><author><name sortKey="Jackwood, Mw" uniqKey="Jackwood M">MW Jackwood</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pei, J" uniqKey="Pei J">J Pei</name></author><author><name sortKey="Briles, We" uniqKey="Briles W">WE Briles</name></author><author><name sortKey="Collisson, Ew" uniqKey="Collisson E">EW Collisson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chinese, Smec" uniqKey="Chinese S">SMEC Chinese</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Song, Hd" uniqKey="Song H">HD Song</name></author><author><name sortKey="Tu, Cc" uniqKey="Tu C">CC Tu</name></author><author><name sortKey="Zhang, Gw" uniqKey="Zhang G">GW Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thompson, Jd" uniqKey="Thompson J">JD Thompson</name></author><author><name sortKey="Higgins, Dg" uniqKey="Higgins D">DG Higgins</name></author><author><name sortKey="Gibson, Tj" uniqKey="Gibson T">TJ Gibson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Jakobsen, Ib" uniqKey="Jakobsen I">IB Jakobsen</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Felsenstein" uniqKey="Felsenstein">Felsenstein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, Z" uniqKey="Yang Z">Z Yang</name></author><author><name sortKey="Nielsen, R" uniqKey="Nielsen R">R Nielsen</name></author><author><name sortKey="Goldman, N" uniqKey="Goldman N">N Goldman</name></author><author><name sortKey="Pedersen, Am" uniqKey="Pedersen A">AM Pedersen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, Z" uniqKey="Yang Z">Z Yang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Karaca, K" uniqKey="Karaca K">K Karaca</name></author><author><name sortKey="Naqi, S" uniqKey="Naqi S">S Naqi</name></author><author><name sortKey="Gelb, J" uniqKey="Gelb J">J 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Cell Res</journal-id><journal-id journal-id-type="iso-abbrev">Cell Res</journal-id><journal-title-group><journal-title>Cell Research</journal-title></journal-title-group><issn pub-type="ppub">1001-0602</issn><issn pub-type="epub">1748-7838</issn><publisher><publisher-name>Nature Publishing Group UK</publisher-name><publisher-loc>London</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">16541132</article-id><article-id pub-id-type="pmc">7091586</article-id><article-id pub-id-type="publisher-id">BF7310041</article-id><article-id pub-id-type="doi">10.1038/sj.cr.7310041</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Evolutionary implications of Avian Infectious Bronchitis Virus (AIBV) analysis</article-title></title-group><contrib-group><contrib contrib-type="author" equal-contrib="yes"><name><surname>Shi</surname><given-names>Peng</given-names></name><xref ref-type="aff" rid="Aff1">1</xref><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author" equal-contrib="yes"><name><surname>Yu</surname><given-names>Li</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Fu</surname><given-names>Yun-xin</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Huang</surname><given-names>Jing-Fei</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Zhang</surname><given-names>Ke-Qin</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Zhang</surname><given-names>Ya-ping</given-names></name><address><phone>+86-871-5190761</phone><fax>+86-871-5195430</fax><email>zhangyp1@263.net.cn</email></address><xref ref-type="aff" rid="Aff1">1</xref><xref ref-type="aff" rid="Aff2">2</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="GRID">grid.419010.d</institution-id><institution-id institution-id-type="ISNI">0000 0004 1792 7072</institution-id><institution>Laboratory of Cellular and Molecular Evolution, and Molecular Biology of Domestic Animals, Kunming Institute of Zoology, Chinese Academy of Sciences,</institution></institution-wrap>Kunming, 650223 China</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="GRID">grid.440773.3</institution-id><institution>Laboratory for Conservation and Utilization of Bio-resource, Yunnan University,</institution></institution-wrap>Kunming, 650091 China</aff><aff id="Aff3"><label>3</label><institution-wrap><institution-id institution-id-type="GRID">grid.267308.8</institution-id><institution-id institution-id-type="ISNI">0000 0000 9206 2401</institution-id><institution>Human Genetics Center, University of Texas at Houston,</institution></institution-wrap>Houston, 77030 Texas USA</aff></contrib-group><pub-date pub-type="epub"><day>16</day><month>3</month><year>2006</year></pub-date><pub-date pub-type="ppub"><month>3</month><year>2006</year></pub-date><volume>16</volume><issue>3</issue><fpage>323</fpage><lpage>327</lpage><history><date date-type="received"><day>2</day><month>9</month><year>2005</year></date><date date-type="rev-recd"><day>3</day><month>11</month><year>2005</year></date><date date-type="accepted"><day>23</day><month>12</month><year>2005</year></date></history><permissions><copyright-statement>© Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 2006</copyright-statement><license><license-p>This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.</license-p></license></permissions><abstract id="Abs1"><p id="Par1">For developing efficient vaccines, it is essential to identify which amino acid changes are most important to the survival of the virus. We investigate the amino acid substitution features in the Avian Infectious Bronchitis Virus (AIBV) antigenic domain of a vaccine serotype (DE072) and a virulent viral strain (GA98) to better understand adaptive evolution of AIBV. In addition, the SARS <italic>Coronavirus</italic> (SARS-CoV) was also analyzed in the same way. It is interesting to find that extreme comparability exists between AIBV and SARS in amino acid substitution pattern. It suggests that amino acid changes that result in overall shift of residue charge and polarity should be paid special attention to during the development of vaccines.</p></abstract><kwd-group xml:lang="en"><title>Keywords</title><kwd>Avian Infectious Bronchitis Virus</kwd><kwd>SARS Coronavirus</kwd><kwd>positive selection</kwd><kwd>adaptive evolution</kwd><kwd>vaccine development</kwd></kwd-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© IBCB, SIBS, CAS 2006</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><noCountry><name sortKey="Fu, Yun Xin" sort="Fu, Yun Xin" uniqKey="Fu Y" first="Yun-Xin" last="Fu">Yun-Xin Fu</name></noCountry><country name="République populaire de Chine"><noRegion><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name></noRegion><name sortKey="Huang, Jing Fei" sort="Huang, Jing Fei" uniqKey="Huang J" first="Jing-Fei" last="Huang">Jing-Fei Huang</name><name sortKey="Shi, Peng" sort="Shi, Peng" uniqKey="Shi P" first="Peng" last="Shi">Peng Shi</name><name sortKey="Yu, Li" sort="Yu, Li" uniqKey="Yu L" first="Li" last="Yu">Li Yu</name><name sortKey="Zhang, Ke Qin" sort="Zhang, Ke Qin" uniqKey="Zhang K" first="Ke-Qin" last="Zhang">Ke-Qin Zhang</name><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name><name sortKey="Zhang, Ya Ping" sort="Zhang, Ya Ping" uniqKey="Zhang Y" first="Ya-Ping" last="Zhang">Ya-Ping Zhang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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