Full genome characterization of two novel Alpha-coronavirus species from Italian bats
Identifieur interne : 002F88 ( Ncbi/Merge ); précédent : 002F87; suivant : 002F89Full genome characterization of two novel Alpha-coronavirus species from Italian bats
Auteurs : Luca De Sabato [Italie] ; Davide Lelli [Italie] ; Francesca Faccin [Italie] ; Sabrina Canziani [Italie] ; Ilaria Di Bartolo [Italie] ; Gabriele Vaccari [Italie] ; Ana Moreno [Italie]Source :
- Virus Research [ 0168-1702 ] ; 2018.
Descripteurs français
- KwdFr :
- Animaux, Biologie informatique, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Génome viral, Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Italie, Phylogénie, Similitude de séquences, Séquençage nucléotidique à haut débit.
- MESH :
- génétique : Coronavirus.
- isolement et purification : Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- Animaux, Biologie informatique, Coronavirus, Génome viral, Italie, Phylogénie, Similitude de séquences, Séquençage nucléotidique à haut débit.
- Wicri :
- geographic : Italie.
English descriptors
- KwdEn :
- Animals, Chiroptera (virology), Computational Biology, Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Genome, Viral, High-Throughput Nucleotide Sequencing, Italy, Phylogeny, Sequence Homology.
- MESH :
- geographic : Italy.
- classification : Coronavirus.
- genetics : Coronavirus.
- isolation & purification : Coronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Computational Biology, Genome, Viral, High-Throughput Nucleotide Sequencing, Phylogeny, Sequence Homology.
Abstract
Three Alpha-CoV strains were fully sequenced by NGS method. The Italian strains were classified into two novel Alpha-CoV species. The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.
Url:
DOI: 10.1016/j.virusres.2018.11.007
PubMed: 30447246
PubMed Central: 7114869
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PMC:7114869Le document en format XML
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wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus Research</title><idno type="ISSN">0168-1702</idno><idno type="eISSN">1872-7492</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Computational Biology</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Italy</term><term>Phylogeny</term><term>Sequence Homology</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Biologie informatique</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Italie</term><term>Phylogénie</term><term>Similitude de séquences</term><term>Séquençage nucléotidique à haut débit</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Computational Biology</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Phylogeny</term><term>Sequence Homology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Biologie informatique</term><term>Coronavirus</term><term>Génome viral</term><term>Italie</term><term>Phylogénie</term><term>Similitude de séquences</term><term>Séquençage nucléotidique à haut débit</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Italie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">Three Alpha-CoV strains were fully sequenced by NGS method.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">The Italian strains were classified into two novel Alpha-CoV species.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ancillotto, L" uniqKey="Ancillotto L">L. Ancillotto</name></author><author><name sortKey="Santini, L" uniqKey="Santini L">L. Santini</name></author><author><name sortKey="Ranc, N" uniqKey="Ranc N">N. Ranc</name></author><author><name sortKey="Maiorano, L" uniqKey="Maiorano L">L. Maiorano</name></author><author><name sortKey="Russo, D" uniqKey="Russo D">D. Russo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Annan, A" uniqKey="Annan A">A. Annan</name></author><author><name sortKey="Baldwin, H J" uniqKey="Baldwin H">H.J. Baldwin</name></author><author><name sortKey="Corman, V M" uniqKey="Corman V">V.M. Corman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Apweiler, R" uniqKey="Apweiler R">R. Apweiler</name></author><author><name sortKey="Attwood, T K" uniqKey="Attwood T">T.K. Attwood</name></author><author><name sortKey="Bairoch, A" uniqKey="Bairoch A">A. 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Yuen</name></author></analytic></biblStruct></listBibl></div1></back></TEI><double pmid="30447246"><pmc><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Full genome characterization of two novel Alpha-coronavirus species from Italian bats</title><author><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">30447246</idno><idno type="pmc">7114869</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7114869</idno><idno type="RBID">PMC:7114869</idno><idno type="doi">10.1016/j.virusres.2018.11.007</idno><date when="2018">2018</date><idno type="wicri:Area/Pmc/Corpus">001607</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001607</idno><idno type="wicri:Area/Pmc/Curation">001607</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001607</idno><idno type="wicri:Area/Pmc/Checkpoint">000542</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000542</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Full genome characterization of two novel Alpha-coronavirus species from Italian bats</title><author><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus Research</title><idno type="ISSN">0168-1702</idno><idno type="eISSN">1872-7492</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">Three Alpha-CoV strains were fully sequenced by NGS method.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">The Italian strains were classified into two novel Alpha-CoV species.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ancillotto, L" uniqKey="Ancillotto L">L. 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Yuen</name></author></analytic></biblStruct></listBibl></div1></back></TEI></pmc><pubmed><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Full genome characterization of two novel Alpha-coronavirus species from Italian bats.</title><author><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><affiliation wicri:level="3"><nlm:affiliation>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy; Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy; Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><affiliation wicri:level="3"><nlm:affiliation>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name><affiliation wicri:level="3"><nlm:affiliation>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy. Electronic address: gabriele.vaccari@iss.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30447246</idno><idno type="pmid">30447246</idno><idno type="doi">10.1016/j.virusres.2018.11.007</idno><idno type="wicri:Area/PubMed/Corpus">000957</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000957</idno><idno type="wicri:Area/PubMed/Curation">000957</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000957</idno><idno type="wicri:Area/PubMed/Checkpoint">000896</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000896</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Full genome characterization of two novel Alpha-coronavirus species from Italian bats.</title><author><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><affiliation wicri:level="3"><nlm:affiliation>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy; Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy; Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><affiliation wicri:level="3"><nlm:affiliation>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name><affiliation wicri:level="3"><nlm:affiliation>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy. Electronic address: gabriele.vaccari@iss.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus research</title><idno type="eISSN">1872-7492</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Computational Biology</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Italy</term><term>Phylogeny</term><term>Sequence Homology</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Biologie informatique</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Génome viral</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Italie</term><term>Phylogénie</term><term>Similitude de séquences</term><term>Séquençage nucléotidique à haut débit</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Computational Biology</term><term>Genome, Viral</term><term>High-Throughput Nucleotide Sequencing</term><term>Phylogeny</term><term>Sequence Homology</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Biologie informatique</term><term>Coronavirus</term><term>Génome viral</term><term>Italie</term><term>Phylogénie</term><term>Similitude de séquences</term><term>Séquençage nucléotidique à haut débit</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Italie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Coronaviruses (CoVs) have been detected worldwide in several bat species, which are considered the main reservoir. The attention to the high diversity of CoVs hosted by bats has increased during the last decade due to the high number of human infections caused by two zoonotic Beta-CoVs, SARS-CoV and MERS-CoV, that cause several respiratory diseases. Among coronaviruses, two Alpha-CoV strains (HuCoV-229E and HuCoV-NL63) cause mild respiratory disease that can change to severe disease in children, elderly and individuals affected by illnesses. Phylogenetic analysis conducted on bat Alpha-CoV strains revealed their evolutive correlation to human strains, suggesting their origin in bats. The genome of CoVs is characterized by a high frequency of mutations and recombination events, increasing their ability to switch hosts and their zoonotic potential. In this study, three strains of Alpha-CoV genera detected in Italian bats (Pipistrellus kuhlii) were fully sequenced by Next Generation Sequencing (NGS) and characterized. The complete genome analysis showed the correlation of the Italians strains with a Chinese strain detected in 2013 and, based on CoV molecular species demarcation, two new Alpha-CoV species were established. The analysis of a fragment of the RNA-dependent RNA polymerase (RdRp) showed the correlation of the Italian strains with CoVs that was only detected in the bat Pipistrellus genera (Pipistrellus kuhlii and Pipistrellus Pipistrellus) in European countries.</div></front></TEI></pubmed></double></record>Pour manipuler ce document sous Unix (Dilib)
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