Full genome characterization of two novel Alpha-coronavirus species from Italian bats
Identifieur interne : 000542 ( Pmc/Checkpoint ); précédent : 000541; suivant : 000543Full genome characterization of two novel Alpha-coronavirus species from Italian bats
Auteurs : Luca De Sabato [Italie] ; Davide Lelli [Italie] ; Francesca Faccin [Italie] ; Sabrina Canziani [Italie] ; Ilaria Di Bartolo [Italie] ; Gabriele Vaccari [Italie] ; Ana Moreno [Italie]Source :
- Virus Research [ 0168-1702 ] ; 2018.
Abstract
Three Alpha-CoV strains were fully sequenced by NGS method. The Italian strains were classified into two novel Alpha-CoV species. The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.
Url:
DOI: 10.1016/j.virusres.2018.11.007
PubMed: 30447246
PubMed Central: 7114869
Affiliations:
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PMC:7114869Le document en format XML
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Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, 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Italian bats</title><author><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><affiliation wicri:level="3"><nlm:aff id="aff0005">Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author><author><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name><affiliation wicri:level="3"><nlm:aff id="aff0010">Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><affiliation wicri:level="1"><nlm:aff id="aff0015">Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia</wicri:regionArea><wicri:noRegion>Brescia</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus Research</title><idno type="ISSN">0168-1702</idno><idno type="eISSN">1872-7492</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">Three Alpha-CoV strains were fully sequenced by NGS method.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">The Italian strains were classified into two novel Alpha-CoV species.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.</p></list-item></list></p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ancillotto, L" uniqKey="Ancillotto L">L. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Virus Res</journal-id><journal-id journal-id-type="iso-abbrev">Virus Res</journal-id><journal-title-group><journal-title>Virus Research</journal-title></journal-title-group><issn pub-type="ppub">0168-1702</issn><issn pub-type="epub">1872-7492</issn><publisher><publisher-name>Elsevier B.V.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">30447246</article-id><article-id pub-id-type="pmc">7114869</article-id><article-id pub-id-type="publisher-id">S0168-1702(18)30585-9</article-id><article-id pub-id-type="doi">10.1016/j.virusres.2018.11.007</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>Full genome characterization of two novel Alpha-coronavirus species from Italian bats</article-title></title-group><contrib-group><contrib contrib-type="author" id="aut0005"><name><surname>De Sabato</surname><given-names>Luca</given-names></name><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0010" ref-type="aff">b</xref></contrib><contrib contrib-type="author" id="aut0010"><name><surname>Lelli</surname><given-names>Davide</given-names></name><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="aut0015"><name><surname>Faccin</surname><given-names>Francesca</given-names></name><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="aut0020"><name><surname>Canziani</surname><given-names>Sabrina</given-names></name><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="aut0025"><name><surname>Di Bartolo</surname><given-names>Ilaria</given-names></name><xref rid="aff0010" ref-type="aff">b</xref></contrib><contrib contrib-type="author" id="aut0030"><name><surname>Vaccari</surname><given-names>Gabriele</given-names></name><email>gabriele.vaccari@iss.it</email><xref rid="aff0010" ref-type="aff">b</xref><xref rid="cor0005" ref-type="corresp">⁎</xref></contrib><contrib contrib-type="author" id="aut0035"><name><surname>Moreno</surname><given-names>Ana</given-names></name><xref rid="aff0015" ref-type="aff">c</xref></contrib></contrib-group><aff id="aff0005"><label>a</label>Department of Sciences, University Roma Tre, Viale Guglielmo Marconi 446, 00146, Rome, Italy</aff><aff id="aff0010"><label>b</label>Department of Food Safety, Nutrition and Veterinary Public Health, Istituto Superiore di Sanità, Viale Regina Elena 299, 00161, Rome, Italy</aff><aff id="aff0015"><label>c</label>Department of Virology, Istituto Zooprofilattico Sperimentale Lombardia ed Emilia Romagna, Via Antonio Bianchi 9, 25124, Brescia, Italy</aff><author-notes><corresp id="cor0005"><label>⁎</label>Corresponding author at: Istituto Superiore di Sanità, Department of Food Safety, Nutrition and Veterinary Public Health, Viale Regina Elena 299, 00161, Rome Italy. <email>gabriele.vaccari@iss.it</email></corresp></author-notes><pub-date pub-type="pmc-release"><day>15</day><month>11</month><year>2018</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><day>15</day><month>1</month><year>2019</year></pub-date><pub-date pub-type="epub"><day>15</day><month>11</month><year>2018</year></pub-date><volume>260</volume><fpage>60</fpage><lpage>66</lpage><history><date date-type="received"><day>25</day><month>9</month><year>2018</year></date><date date-type="rev-recd"><day>7</day><month>11</month><year>2018</year></date><date date-type="accepted"><day>13</day><month>11</month><year>2018</year></date></history><permissions><copyright-statement>© 2018 Elsevier B.V. All rights reserved.</copyright-statement><copyright-year>2018</copyright-year><copyright-holder>Elsevier B.V.</copyright-holder><license><license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p></license></permissions><abstract abstract-type="author-highlights" id="abs0005"><title>Highlights</title><p><list list-type="simple" id="lis0005"><list-item id="lsti0005"><label>•</label><p id="par0005">Three Alpha-CoV strains were fully sequenced by NGS method.</p></list-item><list-item id="lsti0010"><label>•</label><p id="par0010">The Italian strains were classified into two novel Alpha-CoV species.</p></list-item><list-item id="lsti0015"><label>•</label><p id="par0015">The phylogenetic analysis on RdRp fragment sequences showed correlation to European strains.</p></list-item></list></p></abstract><abstract id="abs0010"><p>Coronaviruses (CoVs) have been detected worldwide in several bat species, which are considered the main reservoir. The attention to the high diversity of CoVs hosted by bats has increased during the last decade due to the high number of human infections caused by two zoonotic Beta-CoVs, SARS-CoV and MERS-CoV, that cause several respiratory diseases. Among coronaviruses, two Alpha-CoV strains (HuCoV-229E and HuCoV-NL63) cause mild respiratory disease that can change to severe disease in children, elderly and individuals affected by illnesses. Phylogenetic analysis conducted on bat Alpha-CoV strains revealed their evolutive correlation to human strains, suggesting their origin in bats. The genome of CoVs is characterized by a high frequency of mutations and recombination events, increasing their ability to switch hosts and their zoonotic potential. In this study, three strains of Alpha-CoV genera detected in Italian bats (<italic>Pipistrellus kuhlii</italic>) were fully sequenced by Next Generation Sequencing (NGS) and characterized. The complete genome analysis showed the correlation of the Italians strains with a Chinese strain detected in 2013 and, based on CoV molecular species demarcation, two new Alpha-CoV species were established. The analysis of a fragment of the <italic>RNA-dependent RNA polymerase</italic> (<italic>RdRp</italic>) showed the correlation of the Italian strains with CoVs that was only detected in the bat <italic>Pipistrellus</italic> genera (<italic>Pipistrellus kuhlii</italic> and <italic>Pipistrellus Pipistrellus</italic>) in European countries.</p></abstract><kwd-group id="kwd0005"><title>Keywords</title><kwd>Bats</kwd><kwd>Full genome sequencing</kwd><kwd>Italy</kwd><kwd>Alpha-CoV viruses</kwd></kwd-group></article-meta></front></pmc><affiliations><list><country><li>Italie</li></country><region><li>Latium</li></region><settlement><li>Rome</li></settlement></list><tree><country name="Italie"><region name="Latium"><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name></region><name sortKey="Canziani, Sabrina" sort="Canziani, Sabrina" uniqKey="Canziani S" first="Sabrina" last="Canziani">Sabrina Canziani</name><name sortKey="De Sabato, Luca" sort="De Sabato, Luca" uniqKey="De Sabato L" first="Luca" last="De Sabato">Luca De Sabato</name><name sortKey="Di Bartolo, Ilaria" sort="Di Bartolo, Ilaria" uniqKey="Di Bartolo I" first="Ilaria" last="Di Bartolo">Ilaria Di Bartolo</name><name sortKey="Faccin, Francesca" sort="Faccin, Francesca" uniqKey="Faccin F" first="Francesca" last="Faccin">Francesca Faccin</name><name sortKey="Lelli, Davide" sort="Lelli, Davide" uniqKey="Lelli D" first="Davide" last="Lelli">Davide Lelli</name><name sortKey="Moreno, Ana" sort="Moreno, Ana" uniqKey="Moreno A" first="Ana" last="Moreno">Ana Moreno</name><name sortKey="Vaccari, Gabriele" sort="Vaccari, Gabriele" uniqKey="Vaccari G" first="Gabriele" last="Vaccari">Gabriele Vaccari</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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