Contrasted patterns of variation and evolutionary convergence at the antiviral OAS1 gene in old world primates.
Identifieur interne : 002A94 ( Ncbi/Merge ); précédent : 002A93; suivant : 002A95Contrasted patterns of variation and evolutionary convergence at the antiviral OAS1 gene in old world primates.
Auteurs : Ian Fish [États-Unis] ; Stéphane BoissinotSource :
- Immunogenetics [ 1432-1211 ] ; 2015.
Descripteurs français
- KwdFr :
- 2',5'-Oligoadenylate synthetase (génétique), Alignement de séquences, Analyse de séquence d'ADN, Animaux, Haplotypes (génétique), Macaca fascicularis (génétique), Macaca fascicularis (immunologie), Macaca mulatta (génétique), Macaca mulatta (immunologie), Papio anubis (génétique), Papio anubis (immunologie), Papio papio (génétique), Papio papio (immunologie), Polymorphisme génétique (génétique), Résistance à la maladie (génétique), Structure tertiaire des protéines, Séquence d'acides aminés, Séquence nucléotidique, Évolution moléculaire.
- MESH :
- génétique : 2',5'-Oligoadenylate synthetase, Haplotypes, Macaca fascicularis, Macaca mulatta, Papio anubis, Papio papio, Polymorphisme génétique, Résistance à la maladie.
- immunologie : Macaca fascicularis, Macaca mulatta, Papio anubis, Papio papio.
- Alignement de séquences, Analyse de séquence d'ADN, Animaux, Structure tertiaire des protéines, Séquence d'acides aminés, Séquence nucléotidique, Évolution moléculaire.
English descriptors
- KwdEn :
- 2',5'-Oligoadenylate Synthetase (genetics), Amino Acid Sequence, Animals, Base Sequence, Disease Resistance (genetics), Evolution, Molecular, Haplotypes (genetics), Macaca fascicularis (genetics), Macaca fascicularis (immunology), Macaca mulatta (genetics), Macaca mulatta (immunology), Papio anubis (genetics), Papio anubis (immunology), Papio papio (genetics), Papio papio (immunology), Polymorphism, Genetic (genetics), Protein Structure, Tertiary, Sequence Alignment, Sequence Analysis, DNA.
- MESH :
- chemical , genetics : 2',5'-Oligoadenylate Synthetase.
- genetics : Disease Resistance, Haplotypes, Macaca fascicularis, Macaca mulatta, Papio anubis, Papio papio, Polymorphism, Genetic.
- immunology : Macaca fascicularis, Macaca mulatta, Papio anubis, Papio papio.
- Amino Acid Sequence, Animals, Base Sequence, Evolution, Molecular, Protein Structure, Tertiary, Sequence Alignment, Sequence Analysis, DNA.
Abstract
The oligoadenylate synthetase 1 (OAS1) enzyme acts as an innate sensor of viral infection and plays a major role in the defense against a wide diversity of viruses. Polymorphisms at OAS1 have been shown to correlate with differential susceptibility to several infections of great public health significance, including hepatitis C virus, SARS coronavirus, and West Nile virus. Population genetics analyses in hominoids have revealed interesting evolutionary patterns. In Central African chimpanzee, OAS1 has evolved under long-term balancing selection, resulting in the persistence of polymorphisms since the origin of hominoids, whereas human populations have acquired and retained OAS1 alleles from Neanderthal and Denisovan origin. We decided to further investigate the evolution of OAS1 in primates by characterizing intra-specific variation in four species commonly used as models in infectious disease research: the rhesus macaque, the cynomolgus macaque, the olive baboon, and the Guinea baboon. In baboons, OAS1 harbors a very low level of variation. In contrast, OAS1 in macaques exhibits a level of polymorphism far greater than the genomic average, which is consistent with the action of balancing selection. The region of the enzyme that directly interacts with viral RNA, the RNA-binding domain, contains a number of polymorphisms likely to affect the RNA-binding affinity of OAS1. This strongly suggests that pathogen-driven balancing selection acting on the RNA-binding domain of OAS1 is maintaining variation at this locus. Interestingly, we found that a number of polymorphisms involved in RNA-binding were shared between macaques and chimpanzees. This represents an unusual case of convergent polymorphism.
DOI: 10.1007/s00251-015-0855-0
PubMed: 26156123
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fascicularis (immunology)</term><term>Macaca mulatta (genetics)</term><term>Macaca mulatta (immunology)</term><term>Papio anubis (genetics)</term><term>Papio anubis (immunology)</term><term>Papio papio (genetics)</term><term>Papio papio (immunology)</term><term>Polymorphism, Genetic (genetics)</term><term>Protein Structure, Tertiary</term><term>Sequence Alignment</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>2',5'-Oligoadenylate synthetase (génétique)</term><term>Alignement de séquences</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Haplotypes (génétique)</term><term>Macaca fascicularis (génétique)</term><term>Macaca fascicularis (immunologie)</term><term>Macaca mulatta (génétique)</term><term>Macaca mulatta (immunologie)</term><term>Papio anubis (génétique)</term><term>Papio anubis (immunologie)</term><term>Papio papio (génétique)</term><term>Papio papio (immunologie)</term><term>Polymorphisme génétique (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Structure tertiaire des protéines</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Évolution moléculaire</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>2',5'-Oligoadenylate Synthetase</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Haplotypes</term><term>Macaca fascicularis</term><term>Macaca mulatta</term><term>Papio anubis</term><term>Papio papio</term><term>Polymorphism, Genetic</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>2',5'-Oligoadenylate synthetase</term><term>Haplotypes</term><term>Macaca fascicularis</term><term>Macaca mulatta</term><term>Papio anubis</term><term>Papio papio</term><term>Polymorphisme génétique</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Macaca fascicularis</term><term>Macaca mulatta</term><term>Papio anubis</term><term>Papio papio</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Macaca fascicularis</term><term>Macaca mulatta</term><term>Papio anubis</term><term>Papio papio</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Evolution, Molecular</term><term>Protein Structure, Tertiary</term><term>Sequence Alignment</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Structure tertiaire des protéines</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The oligoadenylate synthetase 1 (OAS1) enzyme acts as an innate sensor of viral infection and plays a major role in the defense against a wide diversity of viruses. Polymorphisms at OAS1 have been shown to correlate with differential susceptibility to several infections of great public health significance, including hepatitis C virus, SARS coronavirus, and West Nile virus. Population genetics analyses in hominoids have revealed interesting evolutionary patterns. In Central African chimpanzee, OAS1 has evolved under long-term balancing selection, resulting in the persistence of polymorphisms since the origin of hominoids, whereas human populations have acquired and retained OAS1 alleles from Neanderthal and Denisovan origin. We decided to further investigate the evolution of OAS1 in primates by characterizing intra-specific variation in four species commonly used as models in infectious disease research: the rhesus macaque, the cynomolgus macaque, the olive baboon, and the Guinea baboon. In baboons, OAS1 harbors a very low level of variation. In contrast, OAS1 in macaques exhibits a level of polymorphism far greater than the genomic average, which is consistent with the action of balancing selection. The region of the enzyme that directly interacts with viral RNA, the RNA-binding domain, contains a number of polymorphisms likely to affect the RNA-binding affinity of OAS1. This strongly suggests that pathogen-driven balancing selection acting on the RNA-binding domain of OAS1 is maintaining variation at this locus. Interestingly, we found that a number of polymorphisms involved in RNA-binding were shared between macaques and chimpanzees. This represents an unusual case of convergent polymorphism. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26156123</PMID><DateCompleted><Year>2016</Year><Month>05</Month><Day>02</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>25</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1211</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>9</Issue><PubDate><Year>2015</Year><Month>Sep</Month></PubDate></JournalIssue><Title>Immunogenetics</Title><ISOAbbreviation>Immunogenetics</ISOAbbreviation></Journal><ArticleTitle>Contrasted patterns of variation and evolutionary convergence at the antiviral OAS1 gene in old world primates.</ArticleTitle><Pagination><MedlinePgn>487-99</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00251-015-0855-0</ELocationID><Abstract><AbstractText>The oligoadenylate synthetase 1 (OAS1) enzyme acts as an innate sensor of viral infection and plays a major role in the defense against a wide diversity of viruses. Polymorphisms at OAS1 have been shown to correlate with differential susceptibility to several infections of great public health significance, including hepatitis C virus, SARS coronavirus, and West Nile virus. Population genetics analyses in hominoids have revealed interesting evolutionary patterns. In Central African chimpanzee, OAS1 has evolved under long-term balancing selection, resulting in the persistence of polymorphisms since the origin of hominoids, whereas human populations have acquired and retained OAS1 alleles from Neanderthal and Denisovan origin. We decided to further investigate the evolution of OAS1 in primates by characterizing intra-specific variation in four species commonly used as models in infectious disease research: the rhesus macaque, the cynomolgus macaque, the olive baboon, and the Guinea baboon. In baboons, OAS1 harbors a very low level of variation. In contrast, OAS1 in macaques exhibits a level of polymorphism far greater than the genomic average, which is consistent with the action of balancing selection. The region of the enzyme that directly interacts with viral RNA, the RNA-binding domain, contains a number of polymorphisms likely to affect the RNA-binding affinity of OAS1. This strongly suggests that pathogen-driven balancing selection acting on the RNA-binding domain of OAS1 is maintaining variation at this locus. Interestingly, we found that a number of polymorphisms involved in RNA-binding were shared between macaques and chimpanzees. This represents an unusual case of convergent polymorphism. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fish</LastName><ForeName>Ian</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Biology Department, Queens College, the City University of New York, Flushing, NY, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boissinot</LastName><ForeName>Stéphane</ForeName><Initials>S</Initials></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>P51 OD011133</GrantID><Acronym>OD</Acronym><Agency>NIH HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>P51 RR013986</GrantID><Acronym>RR</Acronym><Agency>NCRR NIH HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>07</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Immunogenetics</MedlineTA><NlmUniqueID>0420404</NlmUniqueID><ISSNLinking>0093-7711</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>EC 2.7.7.84</RegistryNumber><NameOfSubstance UI="D015088">2',5'-Oligoadenylate Synthetase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015088" MajorTopicYN="N">2',5'-Oligoadenylate Synthetase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008252" MajorTopicYN="N">Macaca fascicularis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008253" MajorTopicYN="N">Macaca mulatta</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D048530" MajorTopicYN="N">Papio anubis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D048531" MajorTopicYN="N">Papio papio</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011110" MajorTopicYN="N">Polymorphism, Genetic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017434" MajorTopicYN="N">Protein Structure, Tertiary</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" 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