Genomic and serological detection of bat coronavirus from bats in the Philippines
Identifieur interne : 002540 ( Ncbi/Curation ); précédent : 002539; suivant : 002541Genomic and serological detection of bat coronavirus from bats in the Philippines
Auteurs : Shumpei Tsuda [Japon] ; Shumpei Watanabe [Japon] ; Joseph S. Masangkay [Philippines] ; Tetsuya Mizutani ; Phillip Alviola [Philippines] ; Naoya Ueda [Japon] ; Koichiro Iha ; Satoshi Taniguchi ; Hikaru Fujii [Japon] ; Kentaro Kato [Japon] ; Taisuke Horimoto [Japon] ; Shigeru Kyuwa [Japon] ; Yasuhiro Yoshikawa ; Hiroomi Akashi [Japon]Source :
- Archives of Virology [ 0304-8608 ] ; 2012.
Descripteurs français
- KwdFr :
- ADN complémentaire (), ARN viral (génétique), ARN viral (isolement et purification), Animaux, Anticorps antiviraux (sang), Chiroptera, Coronavirus (), Coronavirus (génétique), Coronavirus (immunologie), Données de séquences moléculaires, Fèces (virologie), Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Intestins (virologie), Philippines (épidémiologie), Phylogénie, Protéines nucléocapside (génétique), Protéines nucléocapside (métabolisme), Régulation de l'expression des gènes viraux (physiologie), Spécificité d'espèce, Séquence nucléotidique.
- MESH :
- génétique : ARN viral, Coronavirus, Protéines nucléocapside.
- immunologie : Coronavirus.
- isolement et purification : ARN viral.
- médecine vétérinaire : Infections à coronavirus.
- métabolisme : Protéines nucléocapside.
- physiologie : Régulation de l'expression des gènes viraux.
- sang : Anticorps antiviraux.
- virologie : Fèces, Infections à coronavirus, Intestins.
- épidémiologie : Infections à coronavirus, Philippines.
- ADN complémentaire, Animaux, Chiroptera, Coronavirus, Données de séquences moléculaires, Phylogénie, Spécificité d'espèce, Séquence nucléotidique.
- Wicri :
- geographic : Philippines.
English descriptors
- KwdEn :
- Animals, Antibodies, Viral (blood), Base Sequence, Chiroptera, Coronavirus (classification), Coronavirus (genetics), Coronavirus (immunology), Coronavirus Infections (epidemiology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), DNA, Complementary (chemistry), Feces (virology), Gene Expression Regulation, Viral (physiology), Intestines (virology), Molecular Sequence Data, Nucleocapsid Proteins (genetics), Nucleocapsid Proteins (metabolism), Philippines (epidemiology), Phylogeny, RNA, Viral (genetics), RNA, Viral (isolation & purification), Species Specificity.
- MESH :
- chemical , blood : Antibodies, Viral.
- chemical , chemistry : DNA, Complementary.
- geographic , epidemiology : Philippines.
- classification : Coronavirus.
- epidemiology : Coronavirus Infections.
- genetics : Coronavirus, Nucleocapsid Proteins, RNA, Viral.
- immunology : Coronavirus.
- chemical , isolation & purification : RNA, Viral.
- chemical , metabolism : Nucleocapsid Proteins.
- physiology : Gene Expression Regulation, Viral.
- veterinary : Coronavirus Infections.
- virology : Coronavirus Infections, Feces, Intestines.
- Animals, Base Sequence, Chiroptera, Molecular Sequence Data, Phylogeny, Species Specificity.
Abstract
Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus
Url:
DOI: 10.1007/s00705-012-1410-z
PubMed: 22833101
PubMed Central: 7086765
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Tetsuya Mizutani<affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation><affiliation><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.410786.c</institution-id><institution-id institution-id-type="ISNI">0000000092062938</institution-id><institution>Laboratory of Zoonosis, School of Veterinary Medicine,</institution><institution>Kitasato University,</institution></institution-wrap>Higashi 23-bancho, Towada, Aomori 034-8628 Japan</nlm:aff><wicri:noCountry code="subfield">Aomori 034-8628 Japan</wicri:noCountry></affiliation>Le document en format XML
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Kantō</region></placeName></affiliation></author><author><name sortKey="Masangkay, Joseph S" sort="Masangkay, Joseph S" uniqKey="Masangkay J" first="Joseph S." last="Masangkay">Joseph S. Masangkay</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.11176.30</institution-id><institution-id institution-id-type="ISNI">0000000090670374</institution-id><institution>College of Veterinary Medicine,</institution><institution>University of the Philippines Los Baños, College,</institution></institution-wrap>4031 Laguna, Philippines</nlm:aff><country xml:lang="fr">Philippines</country><wicri:regionArea>4031 Laguna</wicri:regionArea></affiliation></author><author><name sortKey="Mizutani, Tetsuya" sort="Mizutani, Tetsuya" uniqKey="Mizutani T" first="Tetsuya" last="Mizutani">Tetsuya Mizutani</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Alviola, Phillip" sort="Alviola, Phillip" uniqKey="Alviola P" first="Phillip" last="Alviola">Phillip Alviola</name><affiliation wicri:level="1"><nlm:aff id="Aff4"><institution-wrap><institution-id institution-id-type="GRID">grid.11176.30</institution-id><institution-id institution-id-type="ISNI">0000000090670374</institution-id><institution>Museum of National History,</institution><institution>University of the Philippines Los Baños, College,</institution></institution-wrap>4031 Laguna, Philippines</nlm:aff><country xml:lang="fr">Philippines</country><wicri:regionArea>4031 Laguna</wicri:regionArea></affiliation></author><author><name sortKey="Ueda, Naoya" sort="Ueda, Naoya" uniqKey="Ueda N" first="Naoya" last="Ueda">Naoya Ueda</name><affiliation wicri:level="3"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Iha, Koichiro" sort="Iha, Koichiro" uniqKey="Iha K" first="Koichiro" last="Iha">Koichiro Iha</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Taniguchi, Satoshi" sort="Taniguchi, Satoshi" uniqKey="Taniguchi S" first="Satoshi" last="Taniguchi">Satoshi Taniguchi</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Fujii, Hikaru" sort="Fujii, Hikaru" uniqKey="Fujii H" first="Hikaru" last="Fujii">Hikaru Fujii</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Kato, Kentaro" sort="Kato, Kentaro" uniqKey="Kato K" first="Kentaro" last="Kato">Kentaro Kato</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Horimoto, Taisuke" sort="Horimoto, Taisuke" uniqKey="Horimoto T" first="Taisuke" last="Horimoto">Taisuke Horimoto</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Kyuwa, Shigeru" sort="Kyuwa, Shigeru" uniqKey="Kyuwa S" first="Shigeru" last="Kyuwa">Shigeru Kyuwa</name><affiliation wicri:level="3"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Yoshikawa, Yasuhiro" sort="Yoshikawa, Yasuhiro" uniqKey="Yoshikawa Y" first="Yasuhiro" last="Yoshikawa">Yasuhiro Yoshikawa</name><affiliation><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.410786.c</institution-id><institution-id institution-id-type="ISNI">0000000092062938</institution-id><institution>Laboratory of Zoonosis, School of Veterinary Medicine,</institution><institution>Kitasato University,</institution></institution-wrap>Higashi 23-bancho, Towada, Aomori 034-8628 Japan</nlm:aff><wicri:noCountry code="subfield">Aomori 034-8628 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Akashi, Hiroomi" sort="Akashi, Hiroomi" uniqKey="Akashi H" first="Hiroomi" last="Akashi">Hiroomi Akashi</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author></analytic><series><title level="j">Archives of Virology</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Antibodies, Viral (blood)</term><term>Base Sequence</term><term>Chiroptera</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (immunology)</term><term>Coronavirus Infections (epidemiology)</term><term>Coronavirus Infections (veterinary)</term><term>Coronavirus Infections (virology)</term><term>DNA, Complementary (chemistry)</term><term>Feces (virology)</term><term>Gene Expression Regulation, Viral (physiology)</term><term>Intestines (virology)</term><term>Molecular Sequence Data</term><term>Nucleocapsid Proteins (genetics)</term><term>Nucleocapsid Proteins (metabolism)</term><term>Philippines (epidemiology)</term><term>Phylogeny</term><term>RNA, Viral (genetics)</term><term>RNA, Viral (isolation & purification)</term><term>Species Specificity</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire ()</term><term>ARN viral (génétique)</term><term>ARN viral (isolement et purification)</term><term>Animaux</term><term>Anticorps antiviraux (sang)</term><term>Chiroptera</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (immunologie)</term><term>Données de séquences moléculaires</term><term>Fèces (virologie)</term><term>Infections à coronavirus (médecine vétérinaire)</term><term>Infections à coronavirus (virologie)</term><term>Infections à coronavirus (épidémiologie)</term><term>Intestins (virologie)</term><term>Philippines (épidémiologie)</term><term>Phylogénie</term><term>Protéines nucléocapside (génétique)</term><term>Protéines nucléocapside (métabolisme)</term><term>Régulation de l'expression des gènes viraux (physiologie)</term><term>Spécificité d'espèce</term><term>Séquence nucléotidique</term></keywords><keywords scheme="MESH" type="chemical" qualifier="blood" xml:lang="en"><term>Antibodies, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Complementary</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Philippines</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term><term>Nucleocapsid Proteins</term><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Coronavirus</term><term>Protéines nucléocapside</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ARN viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Nucleocapsid Proteins</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines nucléocapside</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Régulation de l'expression des gènes viraux</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Gene Expression Regulation, Viral</term></keywords><keywords scheme="MESH" qualifier="sang" xml:lang="fr"><term>Anticorps antiviraux</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Fèces</term><term>Infections à coronavirus</term><term>Intestins</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronavirus Infections</term><term>Feces</term><term>Intestines</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Infections à coronavirus</term><term>Philippines</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Base Sequence</term><term>Chiroptera</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ADN complémentaire</term><term>Animaux</term><term>Chiroptera</term><term>Coronavirus</term><term>Données de séquences moléculaires</term><term>Phylogénie</term><term>Spécificité d'espèce</term><term>Séquence nucléotidique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Philippines</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus <italic>Betacoronavirus</italic>. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. 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