Genomic and serological detection of bat coronavirus from bats in the Philippines
Identifieur interne : 000A62 ( Pmc/Checkpoint ); précédent : 000A61; suivant : 000A63Genomic and serological detection of bat coronavirus from bats in the Philippines
Auteurs : Shumpei Tsuda [Japon] ; Shumpei Watanabe [Japon] ; Joseph S. Masangkay [Philippines] ; Tetsuya Mizutani ; Phillip Alviola [Philippines] ; Naoya Ueda [Japon] ; Koichiro Iha ; Satoshi Taniguchi ; Hikaru Fujii [Japon] ; Kentaro Kato [Japon] ; Taisuke Horimoto [Japon] ; Shigeru Kyuwa [Japon] ; Yasuhiro Yoshikawa ; Hiroomi Akashi [Japon]Source :
- Archives of Virology [ 0304-8608 ] ; 2012.
Abstract
Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus
Url:
DOI: 10.1007/s00705-012-1410-z
PubMed: 22833101
PubMed Central: 7086765
Affiliations:
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Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</nlm:aff><wicri:noCountry code="subfield">Tokyo 208-0011 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Alviola, Phillip" sort="Alviola, Phillip" uniqKey="Alviola P" first="Phillip" last="Alviola">Phillip Alviola</name><affiliation wicri:level="1"><nlm:aff id="Aff4"><institution-wrap><institution-id institution-id-type="GRID">grid.11176.30</institution-id><institution-id institution-id-type="ISNI">0000000090670374</institution-id><institution>Museum of National History,</institution><institution>University of the Philippines Los Baños, College,</institution></institution-wrap>4031 Laguna, Philippines</nlm:aff><country xml:lang="fr">Philippines</country><wicri:regionArea>4031 Laguna</wicri:regionArea></affiliation></author><author><name sortKey="Ueda, Naoya" sort="Ueda, Naoya" uniqKey="Ueda N" first="Naoya" last="Ueda">Naoya Ueda</name><affiliation wicri:level="3"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Iha, Koichiro" sort="Iha, Koichiro" uniqKey="Iha K" first="Koichiro" last="Iha">Koichiro Iha</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of 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first="Hikaru" last="Fujii">Hikaru Fujii</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Kato, Kentaro" sort="Kato, Kentaro" uniqKey="Kato K" first="Kentaro" last="Kato">Kentaro Kato</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Horimoto, Taisuke" sort="Horimoto, Taisuke" uniqKey="Horimoto T" first="Taisuke" last="Horimoto">Taisuke Horimoto</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Kyuwa, Shigeru" sort="Kyuwa, Shigeru" uniqKey="Kyuwa S" first="Shigeru" last="Kyuwa">Shigeru Kyuwa</name><affiliation wicri:level="3"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Yoshikawa, Yasuhiro" sort="Yoshikawa, Yasuhiro" uniqKey="Yoshikawa Y" first="Yasuhiro" last="Yoshikawa">Yasuhiro Yoshikawa</name><affiliation><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.410786.c</institution-id><institution-id institution-id-type="ISNI">0000000092062938</institution-id><institution>Laboratory of Zoonosis, School of Veterinary Medicine,</institution><institution>Kitasato University,</institution></institution-wrap>Higashi 23-bancho, Towada, Aomori 034-8628 Japan</nlm:aff><wicri:noCountry code="subfield">Aomori 034-8628 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Akashi, Hiroomi" sort="Akashi, Hiroomi" uniqKey="Akashi H" first="Hiroomi" last="Akashi">Hiroomi Akashi</name><affiliation wicri:level="3"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>1-1-1 Yayoi, Bunkyo-ku, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author></analytic><series><title level="j">Archives of Virology</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus <italic>Betacoronavirus</italic>. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Arch Virol</journal-id><journal-id journal-id-type="iso-abbrev">Arch. Virol</journal-id><journal-title-group><journal-title>Archives of Virology</journal-title></journal-title-group><issn pub-type="ppub">0304-8608</issn><issn pub-type="epub">1432-8798</issn><publisher><publisher-name>Springer Vienna</publisher-name><publisher-loc>Vienna</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">22833101</article-id><article-id pub-id-type="pmc">7086765</article-id><article-id pub-id-type="publisher-id">1410</article-id><article-id pub-id-type="doi">10.1007/s00705-012-1410-z</article-id><article-categories><subj-group subj-group-type="heading"><subject>Brief Report</subject></subj-group></article-categories><title-group><article-title>Genomic and serological detection of bat coronavirus from bats in the Philippines</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Tsuda</surname><given-names>Shumpei</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Watanabe</surname><given-names>Shumpei</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Masangkay</surname><given-names>Joseph S.</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Mizutani</surname><given-names>Tetsuya</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Alviola</surname><given-names>Phillip</given-names></name><xref ref-type="aff" rid="Aff4">4</xref></contrib><contrib contrib-type="author"><name><surname>Ueda</surname><given-names>Naoya</given-names></name><xref ref-type="aff" rid="Aff5">5</xref></contrib><contrib contrib-type="author"><name><surname>Iha</surname><given-names>Koichiro</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Taniguchi</surname><given-names>Satoshi</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Fujii</surname><given-names>Hikaru</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Kato</surname><given-names>Kentaro</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Horimoto</surname><given-names>Taisuke</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Kyuwa</surname><given-names>Shigeru</given-names></name><xref ref-type="aff" rid="Aff5">5</xref></contrib><contrib contrib-type="author"><name><surname>Yoshikawa</surname><given-names>Yasuhiro</given-names></name><xref ref-type="aff" rid="Aff6">6</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Akashi</surname><given-names>Hiroomi</given-names></name><address><phone>+81-5841-5398</phone><fax>+81-5841-8184</fax><email>akashih@mail.ecc.u-tokyo.ac.jp</email></address><xref ref-type="aff" rid="Aff1">1</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Veterinary Microbiology, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="GRID">grid.11176.30</institution-id><institution-id institution-id-type="ISNI">0000000090670374</institution-id><institution>College of Veterinary Medicine,</institution><institution>University of the Philippines Los Baños, College,</institution></institution-wrap>4031 Laguna, Philippines</aff><aff id="Aff3"><label>3</label><institution-wrap><institution-id institution-id-type="GRID">grid.410795.e</institution-id><institution-id institution-id-type="ISNI">0000000122201880</institution-id><institution>Department of Virology 1,</institution><institution>National Institute of Infectious Diseases,</institution></institution-wrap>Gakuen 4-7-1, Musashimurayama, Tokyo 208-0011 Japan</aff><aff id="Aff4"><label>4</label><institution-wrap><institution-id institution-id-type="GRID">grid.11176.30</institution-id><institution-id institution-id-type="ISNI">0000000090670374</institution-id><institution>Museum of National History,</institution><institution>University of the Philippines Los Baños, College,</institution></institution-wrap>4031 Laguna, Philippines</aff><aff id="Aff5"><label>5</label><institution-wrap><institution-id institution-id-type="GRID">grid.26999.3d</institution-id><institution-id institution-id-type="ISNI">000000012151536X</institution-id><institution>Department of Biomedical Science, Graduate School of Agricultural and Life Sciences,</institution><institution>The University of Tokyo,</institution></institution-wrap>1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657 Japan</aff><aff id="Aff6"><label>6</label><institution-wrap><institution-id institution-id-type="GRID">grid.410786.c</institution-id><institution-id institution-id-type="ISNI">0000000092062938</institution-id><institution>Laboratory of Zoonosis, School of Veterinary Medicine,</institution><institution>Kitasato University,</institution></institution-wrap>Higashi 23-bancho, Towada, Aomori 034-8628 Japan</aff></contrib-group><pub-date pub-type="epub"><day>26</day><month>7</month><year>2012</year></pub-date><pub-date pub-type="ppub"><year>2012</year></pub-date><volume>157</volume><issue>12</issue><fpage>2349</fpage><lpage>2355</lpage><history><date date-type="received"><day>12</day><month>3</month><year>2012</year></date><date date-type="accepted"><day>29</day><month>5</month><year>2012</year></date></history><permissions><copyright-statement>© Springer-Verlag 2012</copyright-statement><license><license-p>This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.</license-p></license></permissions><abstract id="Abs1"><p>Bat coronavirus (BtCoV) is assumed to be a progenitor of severe acute respiratory syndrome (SARS)-related coronaviruses. To explore the distribution of BtCoVs in the Philippines, we collected 179 bats and detected viral RNA from intestinal or fecal samples by RT-PCR. The overall prevalence of BtCoVs among bats was 29.6 %. Phylogenetic analysis of the partial RNA-dependent RNA polymerase gene suggested that one of the detected BtCoVs was a novel alphacoronavirus, while the others belonged to the genus <italic>Betacoronavirus</italic>. Western blotting revealed that 66.5 % of bat sera had antibodies to BtCoV. These surveys suggested the endemic presence of BtCoVs in the Philippines.</p></abstract><kwd-group xml:lang="en"><title>Keywords</title><kwd>Bat coronavirus</kwd><kwd>Coronavirus</kwd><kwd>Bats</kwd><kwd>Antibody</kwd><kwd>Viruses</kwd><kwd>SARS</kwd><kwd>Severe acute respiratory syndrome</kwd><kwd>Zoonosis</kwd></kwd-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© Springer-Verlag Wien 2012</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>Japon</li><li>Philippines</li></country><region><li>Région de Kantō</li></region><settlement><li>Tokyo</li></settlement></list><tree><noCountry><name sortKey="Iha, Koichiro" sort="Iha, Koichiro" uniqKey="Iha K" first="Koichiro" last="Iha">Koichiro Iha</name><name sortKey="Mizutani, Tetsuya" sort="Mizutani, Tetsuya" uniqKey="Mizutani T" first="Tetsuya" last="Mizutani">Tetsuya Mizutani</name><name sortKey="Taniguchi, Satoshi" sort="Taniguchi, Satoshi" uniqKey="Taniguchi S" first="Satoshi" last="Taniguchi">Satoshi Taniguchi</name><name sortKey="Yoshikawa, Yasuhiro" sort="Yoshikawa, Yasuhiro" uniqKey="Yoshikawa Y" first="Yasuhiro" last="Yoshikawa">Yasuhiro Yoshikawa</name></noCountry><country name="Japon"><region name="Région de Kantō"><name sortKey="Tsuda, Shumpei" sort="Tsuda, Shumpei" uniqKey="Tsuda S" first="Shumpei" last="Tsuda">Shumpei Tsuda</name></region><name sortKey="Akashi, Hiroomi" sort="Akashi, Hiroomi" uniqKey="Akashi H" first="Hiroomi" last="Akashi">Hiroomi Akashi</name><name sortKey="Fujii, Hikaru" sort="Fujii, Hikaru" uniqKey="Fujii H" first="Hikaru" last="Fujii">Hikaru Fujii</name><name sortKey="Horimoto, Taisuke" sort="Horimoto, Taisuke" uniqKey="Horimoto T" first="Taisuke" last="Horimoto">Taisuke Horimoto</name><name sortKey="Kato, Kentaro" sort="Kato, Kentaro" uniqKey="Kato K" first="Kentaro" last="Kato">Kentaro Kato</name><name sortKey="Kyuwa, Shigeru" sort="Kyuwa, Shigeru" uniqKey="Kyuwa S" first="Shigeru" last="Kyuwa">Shigeru Kyuwa</name><name sortKey="Ueda, Naoya" sort="Ueda, Naoya" uniqKey="Ueda N" first="Naoya" last="Ueda">Naoya Ueda</name><name sortKey="Watanabe, Shumpei" sort="Watanabe, Shumpei" uniqKey="Watanabe S" first="Shumpei" last="Watanabe">Shumpei Watanabe</name></country><country name="Philippines"><noRegion><name sortKey="Masangkay, Joseph S" sort="Masangkay, Joseph S" uniqKey="Masangkay J" first="Joseph S." last="Masangkay">Joseph S. Masangkay</name></noRegion><name sortKey="Alviola, Phillip" sort="Alviola, Phillip" uniqKey="Alviola P" first="Phillip" last="Alviola">Phillip Alviola</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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