SrasV1, Ncbi, Curation, bibRecord, 000721

Mutational patterns correlate with genome organization in SARS and other coronaviruses

Identifieur interne : 000721 ( Ncbi/Curation ); précédent : 000720; suivant : 000722

Mutational patterns correlate with genome organization in SARS and other coronaviruses

Auteurs : Andrei Grigoriev

Source :

Trends in Genetics [ 0168-9525 ] ; 2004.

RBID : PMC:7127256

Descripteurs français

KwdFr :
- Coronavirus (génétique), Exons, Gènes viraux (génétique), Génome viral, Introns, Mutation (génétique), Virus du SRAS (génétique).
MESH :
- génétique : Coronavirus, Gènes viraux, Mutation, Virus du SRAS.
- Exons, Génome viral, Introns.

English descriptors

KwdEn :
- Coronavirus (genetics), Exons, Genes, Viral (genetics), Genome, Viral, Introns, Mutation (genetics), SARS Virus (genetics).
MESH :
- genetics : Coronavirus, Genes, Viral, Mutation, SARS Virus.
- Exons, Genome, Viral, Introns.

Abstract

Focused efforts by several international laboratories have resulted in the sequencing of the genome of the causative agent of severe acute respiratory syndrome (SARS), novel coronavirus SARS-CoV, in record time. Using cumulative skew diagrams, I found that mutational patterns in the SARS-CoV genome were strikingly different from other coronaviruses in terms of mutation rates, although they were in general agreement with the model of the coronavirus lifecycle. These findings might be relevant for the development of sequence-based diagnostics and the design of agents to treat SARS.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7127256

DOI: 10.1016/j.tig.2004.01.009
PubMed: 15049309
PubMed Central: 7127256

Links toward previous steps (curation, corpus...)

to stream Pmc, to step Corpus: Pour aller vers cette notice dans l'étape Curation :001896
to stream Pmc, to step Curation: Pour aller vers cette notice dans l'étape Curation :001896
to stream Pmc, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :001587
to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :002E77
to stream PubMed, to step Curation: Pour aller vers cette notice dans l'étape Curation :002E77
to stream PubMed, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :002B79
to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000721

Links to Exploration step

PMC:7127256

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Mutational patterns correlate with genome organization in SARS and other coronaviruses</title>
<author><name sortKey="Grigoriev, Andrei" sort="Grigoriev, Andrei" uniqKey="Grigoriev A" first="Andrei" last="Grigoriev">Andrei Grigoriev</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">15049309</idno>
<idno type="pmc">7127256</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7127256</idno>
<idno type="RBID">PMC:7127256</idno>
<idno type="doi">10.1016/j.tig.2004.01.009</idno>
<date when="2004">2004</date>
<idno type="wicri:Area/Pmc/Corpus">001896</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001896</idno>
<idno type="wicri:Area/Pmc/Curation">001896</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001896</idno>
<idno type="wicri:Area/Pmc/Checkpoint">001587</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">001587</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:15049309</idno>
<idno type="wicri:Area/PubMed/Corpus">002E77</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">002E77</idno>
<idno type="wicri:Area/PubMed/Curation">002E77</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">002E77</idno>
<idno type="wicri:Area/PubMed/Checkpoint">002B79</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">002B79</idno>
<idno type="wicri:Area/Ncbi/Merge">000721</idno>
<idno type="wicri:Area/Ncbi/Curation">000721</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Mutational patterns correlate with genome organization in SARS and other coronaviruses</title>
<author><name sortKey="Grigoriev, Andrei" sort="Grigoriev, Andrei" uniqKey="Grigoriev A" first="Andrei" last="Grigoriev">Andrei Grigoriev</name>
</author>
</analytic>
<series><title level="j">Trends in Genetics</title>
<idno type="ISSN">0168-9525</idno>
<idno type="eISSN">0168-9525</idno>
<imprint><date when="2004">2004</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Coronavirus (genetics)</term>
<term>Exons</term>
<term>Genes, Viral (genetics)</term>
<term>Genome, Viral</term>
<term>Introns</term>
<term>Mutation (genetics)</term>
<term>SARS Virus (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Coronavirus (génétique)</term>
<term>Exons</term>
<term>Gènes viraux (génétique)</term>
<term>Génome viral</term>
<term>Introns</term>
<term>Mutation (génétique)</term>
<term>Virus du SRAS (génétique)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
<term>Genes, Viral</term>
<term>Mutation</term>
<term>SARS Virus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term>
<term>Gènes viraux</term>
<term>Mutation</term>
<term>Virus du SRAS</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Exons</term>
<term>Genome, Viral</term>
<term>Introns</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Exons</term>
<term>Génome viral</term>
<term>Introns</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Focused efforts by several international laboratories have resulted in the sequencing of the genome of the causative agent of severe acute respiratory syndrome (SARS), novel coronavirus SARS-CoV, in record time. Using cumulative skew diagrams, I found that mutational patterns in the SARS-CoV genome were strikingly different from other coronaviruses in terms of mutation rates, although they were in general agreement with the model of the coronavirus lifecycle. These findings might be relevant for the development of sequence-based diagnostics and the design of agents to treat SARS.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Grigoriev, A" uniqKey="Grigoriev A">A. Grigoriev</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Beletskii, A" uniqKey="Beletskii A">A. Beletskii</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Berkhout, B" uniqKey="Berkhout B">B. Berkhout</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rota, P A" uniqKey="Rota P">P.A. Rota</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Marra, M A" uniqKey="Marra M">M.A. Marra</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lindahl, T" uniqKey="Lindahl T">T. Lindahl</name>
</author>
<author><name sortKey="Nyberg, B" uniqKey="Nyberg B">B. Nyberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grigoriev, A" uniqKey="Grigoriev A">A. Grigoriev</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grigoriev, A" uniqKey="Grigoriev A">A. Grigoriev</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sawicki, S G" uniqKey="Sawicki S">S.G. Sawicki</name>
</author>
<author><name sortKey="Sawicki, D L" uniqKey="Sawicki D">D.L. Sawicki</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sawicki, S G" uniqKey="Sawicki S">S.G. Sawicki</name>
</author>
<author><name sortKey="Sawicki, D L" uniqKey="Sawicki D">D.L. Sawicki</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pasternak, A O" uniqKey="Pasternak A">A.O. Pasternak</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sawicki, S G" uniqKey="Sawicki S">S.G. Sawicki</name>
</author>
<author><name sortKey="Sawicki, D L" uniqKey="Sawicki D">D.L. Sawicki</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chouljenko, V N" uniqKey="Chouljenko V">V.N. Chouljenko</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Leparc Goffart, I" uniqKey="Leparc Goffart I">I. Leparc-Goffart</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Anand, K" uniqKey="Anand K">K. Anand</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Snijder, E J" uniqKey="Snijder E">E.J. Snijder</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kocherhans, R" uniqKey="Kocherhans R">R. Kocherhans</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thiel, V" uniqKey="Thiel V">V. Thiel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Boursnell, M E" uniqKey="Boursnell M">M.E. Boursnell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lobry, J R" uniqKey="Lobry J">J.R. Lobry</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mrazek, J" uniqKey="Mrazek J">J. Mrazek</name>
</author>
<author><name sortKey="Karlin, S" uniqKey="Karlin S">S. Karlin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Francino, M P" uniqKey="Francino M">M.P. Francino</name>
</author>
<author><name sortKey="Ochman, H" uniqKey="Ochman H">H. Ochman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Frank, A C" uniqKey="Frank A">A.C. Frank</name>
</author>
<author><name sortKey="Lobry, J R" uniqKey="Lobry J">J.R. Lobry</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sethna, P B" uniqKey="Sethna P">P.B. Sethna</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Ncbi/Curation

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000721 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000721 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    SrasV1
   |flux=    Ncbi
   |étape=   Curation
   |type=    RBID
   |clé=     PMC:7127256
   |texte=   Mutational patterns correlate with genome organization in SARS and other coronaviruses
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i   -Sk "pubmed:15049309" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a SrasV1

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 28 14:49:16 2020. Site generation: Sat Mar 27 22:06:49 2021

	Serveur d'exploration SRAS
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration SRAS

Mutational patterns correlate with genome organization in SARS and other coronaviruses

Mutational patterns correlate with genome organization in SARS and other coronaviruses

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki