Genetic distance of SARS coronavirus from the recent natural case
Identifieur interne : 001786 ( Ncbi/Checkpoint ); précédent : 001785; suivant : 001787Genetic distance of SARS coronavirus from the recent natural case
Auteurs : Zhi-Gang Wang [République populaire de Chine] ; Shu-Ping Xu [République populaire de Chine] ; Yan-Jun Zhang [République populaire de Chine] ; Qi-Yu Bao [République populaire de Chine]Source :
- Veterinary Microbiology [ 0378-1135 ] ; 2006.
Descripteurs français
- KwdFr :
- Analyse de séquence, Animaux, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires (), Glycoprotéines membranaires (génétique), Humains, Infections à Coronaviridae (virologie), Phylogénie, Protéines de l'enveloppe virale (), Protéines de l'enveloppe virale (génétique), Substitution d'acide aminé, Séquence d'acides aminés, Variation génétique, Virus du SRAS (), Virus du SRAS (génétique).
- MESH :
- génétique : Glycoprotéines membranaires, Protéines de l'enveloppe virale, Virus du SRAS.
- virologie : Infections à Coronaviridae.
- Analyse de séquence, Animaux, Glycoprotéine de spicule des coronavirus, Glycoprotéines membranaires, Humains, Phylogénie, Protéines de l'enveloppe virale, Substitution d'acide aminé, Séquence d'acides aminés, Variation génétique, Virus du SRAS.
English descriptors
- KwdEn :
- Amino Acid Sequence, Amino Acid Substitution, Animals, Coronaviridae Infections (virology), Genetic Variation, Humans, Membrane Glycoproteins (chemistry), Membrane Glycoproteins (genetics), Phylogeny, SARS Virus (classification), SARS Virus (genetics), Sequence Analysis, Spike Glycoprotein, Coronavirus, Viral Envelope Proteins (chemistry), Viral Envelope Proteins (genetics).
- MESH :
- chemical , chemistry : Membrane Glycoproteins, Viral Envelope Proteins.
- chemical , genetics : Membrane Glycoproteins, Viral Envelope Proteins.
- classification : SARS Virus.
- genetics : SARS Virus.
- virology : Coronaviridae Infections.
- Amino Acid Sequence, Amino Acid Substitution, Animals, Genetic Variation, Humans, Phylogeny, Sequence Analysis, Spike Glycoprotein, Coronavirus.
Abstract
Phylogenetic analysis of SARS coronavirus isolates based on the spike gene and protein sequence using Neighbor-Joining, maximum likelihood and Bayesian inference methods indicated that a recent human SARS-CoV isolate was closer to some human SARS-CoV isolates from earlier epidemic phase than to the SARS-CoV-like viruses isolated from wild animals during previous epidemic phase. A reasonable judgment based on phylogenetic relationship and sequence variations it is likely that the recent human SARS-CoV isolate is closer to an unknown SARS-CoV predecessor.
Url:
DOI: 10.1016/j.vetmic.2006.10.022
PubMed: 17141432
PubMed Central: 7117388
Affiliations:
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PMC:7117388Le document en format XML
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<series><title level="j">Veterinary Microbiology</title>
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<term>Coronaviridae Infections (virology)</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Membrane Glycoproteins (chemistry)</term>
<term>Membrane Glycoproteins (genetics)</term>
<term>Phylogeny</term>
<term>SARS Virus (classification)</term>
<term>SARS Virus (genetics)</term>
<term>Sequence Analysis</term>
<term>Spike Glycoprotein, Coronavirus</term>
<term>Viral Envelope Proteins (chemistry)</term>
<term>Viral Envelope Proteins (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence</term>
<term>Animaux</term>
<term>Glycoprotéine de spicule des coronavirus</term>
<term>Glycoprotéines membranaires ()</term>
<term>Glycoprotéines membranaires (génétique)</term>
<term>Humains</term>
<term>Infections à Coronaviridae (virologie)</term>
<term>Phylogénie</term>
<term>Protéines de l'enveloppe virale ()</term>
<term>Protéines de l'enveloppe virale (génétique)</term>
<term>Substitution d'acide aminé</term>
<term>Séquence d'acides aminés</term>
<term>Variation génétique</term>
<term>Virus du SRAS ()</term>
<term>Virus du SRAS (génétique)</term>
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<term>Viral Envelope Proteins</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Membrane Glycoproteins</term>
<term>Viral Envelope Proteins</term>
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<term>Humans</term>
<term>Phylogeny</term>
<term>Sequence Analysis</term>
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<front><div type="abstract" xml:lang="en"><p>Phylogenetic analysis of SARS coronavirus isolates based on the spike gene and protein sequence using Neighbor-Joining, maximum likelihood and Bayesian inference methods indicated that a recent human SARS-CoV isolate was closer to some human SARS-CoV isolates from earlier epidemic phase than to the SARS-CoV-like viruses isolated from wild animals during previous epidemic phase. A reasonable judgment based on phylogenetic relationship and sequence variations it is likely that the recent human SARS-CoV isolate is closer to an unknown SARS-CoV predecessor.</p>
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<author><name sortKey="Yan, M" uniqKey="Yan M">M. Yan</name>
</author>
<author><name sortKey="Yang, L" uniqKey="Yang L">L. Yang</name>
</author>
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<biblStruct><analytic><author><name sortKey="Wu, C Y" uniqKey="Wu C">C.Y. Wu</name>
</author>
<author><name sortKey="Jan, J T" uniqKey="Jan J">J.T. Jan</name>
</author>
<author><name sortKey="Ma, S H" uniqKey="Ma S">S.H. Ma</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Guan, Y" uniqKey="Guan Y">Y. Guan</name>
</author>
<author><name sortKey="Zheng, B J" uniqKey="Zheng B">B.J. Zheng</name>
</author>
<author><name sortKey="He, Y Q" uniqKey="He Y">Y.Q. He</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Song, H D" uniqKey="Song H">H.D. Song</name>
</author>
<author><name sortKey="Tu, C C" uniqKey="Tu C">C.C. Tu</name>
</author>
<author><name sortKey="Zhang, G W" uniqKey="Zhang G">G.W. Zhang</name>
</author>
</analytic>
</biblStruct>
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</author>
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</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Li, L J" uniqKey="Li L">L.J. Li</name>
</author>
<author><name sortKey="Wang, Z G" uniqKey="Wang Z">Z.G. Wang</name>
</author>
<author><name sortKey="Lu, Y Y" uniqKey="Lu Y">Y.Y. Lu</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Posada, D" uniqKey="Posada D">D. Posada</name>
</author>
<author><name sortKey="Crandall, K A" uniqKey="Crandall K">K.A. Crandall</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ruan, Y J" uniqKey="Ruan Y">Y.J. Ruan</name>
</author>
<author><name sortKey="Wei, C L" uniqKey="Wei C">C.L. Wei</name>
</author>
<author><name sortKey="Ee, A L" uniqKey="Ee A">A.L. Ee</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stadler, K" uniqKey="Stadler K">K. Stadler</name>
</author>
<author><name sortKey="Masignani, V" uniqKey="Masignani V">V. Masignani</name>
</author>
<author><name sortKey="Eickmann, M" uniqKey="Eickmann M">M. Eickmann</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stavrinides, J" uniqKey="Stavrinides J">J. Stavrinides</name>
</author>
<author><name sortKey="Guttman, D S" uniqKey="Guttman D">D.S. Guttman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Swofford, D L" uniqKey="Swofford D">D.L. Swofford</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thompson, J D" uniqKey="Thompson J">J.D. Thompson</name>
</author>
<author><name sortKey="Higgins, D G" uniqKey="Higgins D">D.G. Higgins</name>
</author>
<author><name sortKey="Gibson, T J" uniqKey="Gibson T">T.J. Gibson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tsui, S K W" uniqKey="Tsui S">S.K.W. Tsui</name>
</author>
<author><name sortKey="Chim, S S C" uniqKey="Chim S">S.S.C. Chim</name>
</author>
<author><name sortKey="Dennis, Y M L" uniqKey="Dennis Y">Y.M.L. Dennis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, Z G" uniqKey="Wang Z">Z.G. Wang</name>
</author>
<author><name sortKey="Li, L J" uniqKey="Li L">L.J. Li</name>
</author>
<author><name sortKey="Luo, Y" uniqKey="Luo Y">Y. Luo</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Zhao, G P" uniqKey="Zhao G">G.P. Zhao</name>
</author>
<author><name sortKey="He, J F" uniqKey="He J">J.F. He</name>
</author>
<author><name sortKey="Peng, G W" uniqKey="Peng G">G.W. Peng</name>
</author>
</analytic>
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