AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.
Identifieur interne : 001718 ( Main/Merge ); précédent : 001717; suivant : 001719AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.
Auteurs : Abid Qureshi [Inde] ; Nishant Thakur ; Himani Tandon ; Manoj KumarSource :
- Nucleic acids research [ 1362-4962 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- pharmacologie : Antiviraux, Peptides.
- Antiviraux, Bases de données chimiques, Internet, Logiciel, Peptides.
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Antiviral Agents, Peptides.
- chemical , pharmacology : Antiviral Agents, Peptides.
- Databases, Chemical, Internet, Software.
Abstract
Antiviral peptides (AVPs) have exhibited huge potential in inhibiting viruses by targeting various stages of their life cycle. Therefore, we have developed AVPdb, available online at http://crdd.osdd.net/servers/avpdb, to provide a dedicated resource of experimentally verified AVPs targeting over 60 medically important viruses including Influenza, HCV, HSV, RSV, HBV, DENV, SARS, etc. However, we have separately provided HIV inhibiting peptides in 'HIPdb'. AVPdb contains detailed information of 2683 peptides, including 624 modified peptides experimentally tested for antiviral activity. In modified peptides a chemical moiety is attached for increasing their efficacy and stability. Detailed information include: peptide sequence, length, source, virus targeted, virus family, cell line used, efficacy (qualitative/quantitative), target step/protein, assay used in determining the efficacy and PubMed reference. The database also furnishes physicochemical properties and predicted structure for each peptide. We have provided user-friendly browsing and search facility along with other analysis tools to help the users. Entering of many synthetic peptide-based drugs in various stages of clinical trials reiterate the importance for the AVP resources. AVPdb is anticipated to cater to the needs of scientific community working for the development of antiviral therapeutics.
DOI: 10.1093/nar/gkt1191
PubMed: 24285301
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 001092
- to stream PubMed, to step Curation: 001092
- to stream PubMed, to step Checkpoint: 001052
- to stream Ncbi, to step Merge: 002788
- to stream Ncbi, to step Curation: 002788
- to stream Ncbi, to step Checkpoint: 002788
Links to Exploration step
pubmed:24285301Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.</title>
<author><name sortKey="Qureshi, Abid" sort="Qureshi, Abid" uniqKey="Qureshi A" first="Abid" last="Qureshi">Abid Qureshi</name>
<affiliation wicri:level="1"><nlm:affiliation>Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Sector 39-A, Chandigarh-160036, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Sector 39-A, Chandigarh-160036</wicri:regionArea>
<wicri:noRegion>Chandigarh-160036</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thakur, Nishant" sort="Thakur, Nishant" uniqKey="Thakur N" first="Nishant" last="Thakur">Nishant Thakur</name>
</author>
<author><name sortKey="Tandon, Himani" sort="Tandon, Himani" uniqKey="Tandon H" first="Himani" last="Tandon">Himani Tandon</name>
</author>
<author><name sortKey="Kumar, Manoj" sort="Kumar, Manoj" uniqKey="Kumar M" first="Manoj" last="Kumar">Manoj Kumar</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:24285301</idno>
<idno type="pmid">24285301</idno>
<idno type="doi">10.1093/nar/gkt1191</idno>
<idno type="wicri:Area/PubMed/Corpus">001092</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001092</idno>
<idno type="wicri:Area/PubMed/Curation">001092</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001092</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001052</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001052</idno>
<idno type="wicri:Area/Ncbi/Merge">002788</idno>
<idno type="wicri:Area/Ncbi/Curation">002788</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">002788</idno>
<idno type="wicri:Area/Main/Merge">001718</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.</title>
<author><name sortKey="Qureshi, Abid" sort="Qureshi, Abid" uniqKey="Qureshi A" first="Abid" last="Qureshi">Abid Qureshi</name>
<affiliation wicri:level="1"><nlm:affiliation>Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Sector 39-A, Chandigarh-160036, India.</nlm:affiliation>
<country xml:lang="fr">Inde</country>
<wicri:regionArea>Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research, Sector 39-A, Chandigarh-160036</wicri:regionArea>
<wicri:noRegion>Chandigarh-160036</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thakur, Nishant" sort="Thakur, Nishant" uniqKey="Thakur N" first="Nishant" last="Thakur">Nishant Thakur</name>
</author>
<author><name sortKey="Tandon, Himani" sort="Tandon, Himani" uniqKey="Tandon H" first="Himani" last="Tandon">Himani Tandon</name>
</author>
<author><name sortKey="Kumar, Manoj" sort="Kumar, Manoj" uniqKey="Kumar M" first="Manoj" last="Kumar">Manoj Kumar</name>
</author>
</analytic>
<series><title level="j">Nucleic acids research</title>
<idno type="eISSN">1362-4962</idno>
<imprint><date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Antiviral Agents (chemistry)</term>
<term>Antiviral Agents (pharmacology)</term>
<term>Databases, Chemical</term>
<term>Internet</term>
<term>Peptides (chemistry)</term>
<term>Peptides (pharmacology)</term>
<term>Software</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Antiviraux ()</term>
<term>Antiviraux (pharmacologie)</term>
<term>Bases de données chimiques</term>
<term>Internet</term>
<term>Logiciel</term>
<term>Peptides ()</term>
<term>Peptides (pharmacologie)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Antiviral Agents</term>
<term>Peptides</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Antiviral Agents</term>
<term>Peptides</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Antiviraux</term>
<term>Peptides</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Databases, Chemical</term>
<term>Internet</term>
<term>Software</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Antiviraux</term>
<term>Bases de données chimiques</term>
<term>Internet</term>
<term>Logiciel</term>
<term>Peptides</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Antiviral peptides (AVPs) have exhibited huge potential in inhibiting viruses by targeting various stages of their life cycle. Therefore, we have developed AVPdb, available online at http://crdd.osdd.net/servers/avpdb, to provide a dedicated resource of experimentally verified AVPs targeting over 60 medically important viruses including Influenza, HCV, HSV, RSV, HBV, DENV, SARS, etc. However, we have separately provided HIV inhibiting peptides in 'HIPdb'. AVPdb contains detailed information of 2683 peptides, including 624 modified peptides experimentally tested for antiviral activity. In modified peptides a chemical moiety is attached for increasing their efficacy and stability. Detailed information include: peptide sequence, length, source, virus targeted, virus family, cell line used, efficacy (qualitative/quantitative), target step/protein, assay used in determining the efficacy and PubMed reference. The database also furnishes physicochemical properties and predicted structure for each peptide. We have provided user-friendly browsing and search facility along with other analysis tools to help the users. Entering of many synthetic peptide-based drugs in various stages of clinical trials reiterate the importance for the AVP resources. AVPdb is anticipated to cater to the needs of scientific community working for the development of antiviral therapeutics. </div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001718 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Merge/biblio.hfd -nk 001718 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Sante |area= SrasV1 |flux= Main |étape= Merge |type= RBID |clé= pubmed:24285301 |texte= AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Merge/RBID.i -Sk "pubmed:24285301" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Merge/biblio.hfd \ | NlmPubMed2Wicri -a SrasV1
![]() | This area was generated with Dilib version V0.6.33. | ![]() |